TCONS_00004891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004891
Unique NameTCONS_00004891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004891 ID=TCONS_00004891|Name=TCONS_00004891|organism=Clytia hemisphaerica|type=transcript|length=1425bp
CATTTTGTATTGGAAAACCTGAACGAAACATTTTCCCTGGAAGTTGCCAC
AAATATATTACTTGTATCGATGGTAAAAAAGGCGTGGTCAATTGCTGGTG
GTACAAGTATGACCCAACCCTCAAGAAATGTGTTAATCCACATAGTGTTT
TGTGTAAAGATGGTGAATTCTTCACGACAACaactacaactacaacaacg
acaacgaccacccctTTCACTGGTTCCACCATCCCCACAACTAGGCCCAA
GACCACCAAAAGTATGTTTCtccttttcaattctttttggtTAATTCTAT
CCATTGGATTTACAGCCCATCGTTATTAAGGCTGAATTTTTTGCTTAGTG
TTgtctttttttgttatttgtcttaaagttttttttcacccCCTCACTTT
TCACTTGAATAGAATGATGTGATCGATGAGAAATTTTGAGAAACCCACCA
AAATGACATTCGGAAATATCGGTACCTTTGAGCGATACCtattataatat
atatatttcCCTGTTTTAGGTGTTTGCGCAAAGAGCGGTGAATATTACAT
TCGCGATTCAAAAGATTGCAGCAAATTTATCCATTGTCAAGGCTCCCGAC
CAACGTTCAAAACATGTCCTGGTGTCCTTGTTTTCGATGTAGAGAAGAAT
GTTTGTAATTGGCGTTTCGCAGTCGACTGTGGTGATGCAACAACTGCCGC
CCCAGTCACAACCACCACAAAAGCCCCTGCAACAACACGAAAACCAGAAA
CAACAATTGCTGCCCCTAAAACAACAACCAAAGCTCCCGCAACTACGCAG
AAAGCACCGAAAACCACTACAGTCGCTGCACCTGAAACGACAACCGTTGC
TGCACCTGCAACCACGACAGCTGCTGCACCTGAAACTACTACCAAAGCAC
CAAAGACTACAACTGCTGCACCCAAAACCACTACAGTTGCTGCACCAGAA
ACCACTACCACGGTAGCTGCACCCGAGACAACAGTGAAAATTGCCACAAC
AAAAGCAAAACCCACAACAACAGAAGCTCAATCACTTTGCAAAGGCAAGA
GCGGCCCTGTTCCACACCCAAAAGATTGTACAAAATATTTCCAATGTGTC
CATGGACGAAGTTACGATCGATCGTGTCCAACAGGATTACATTTCGATAA
AAAGAACGGATACTGTAATTGGCCAGCTGTAGCAAAATGCTCTACACATT
AACCAATTAAATTGCATATCCTTAAAATatagaccaatcaaaattcTAGA
TTGGCGCCGatattttttaggctttttttcacgttttatctttttaacaa
ttttaaatgacttaaattttatattttttacatttttttataaaatttat
taaatttttactttgaCAATATTATTTTTGAAAGCCTGTTTAGGTAAAAA
AGAgagaattattttaaattaCATT
Run BLAST on NCBI

transcript from alignment at sc0000049:113232..115582-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004891 ID=TCONS_00004891|Name=TCONS_00004891|organism=Clytia hemisphaerica|type=transcript|length=2351bp|location=Sequence derived from alignment at sc0000049:113232..115582- (Clytia hemisphaerica)
CATTTTGTATTGGAAAACCTGAACGAAACATTTTCCCTGGAAGTTGCCAC
AAATATATTACTTGTATCGATGGTAAAAAAGGCGTGGTCAATTGCTGGTG
GTACAAGTATGACCCAACCCTCAAGAAATGTGTTAATCCACATAGTGTTT
TGTGTAAAGATGGTGAATTCTGTAAGTTGTAAAAATAATTAAAATCTCTA
ACCAACAAATTAATTGCAAAAGAGTCTAGACAAGTAAGAAATTGACGTTA
CCATATTCTACTTCCATAACTACAGAACTACAAAACAGGTCTTTGATCTT
GGGCTTGTGGGGAATCAAATAGGAATATAATGTCCAGTTATAAGAAAGTA
GCATAATAAATTAAACTTCTGAAGGATACAGTATGAGAAAACCTCAAATC
TTTTTCTGAGGGATGGTTAGTTGACTTTTAAATATAATTTATTACTAAAA
CTTTTGAAAAATATAAATCCTTGATTCCCTTCATGGTTATTAACCTAATT
AACCCAAAGCCAATTAGTTGCATTCTTTACGTTCATTCTTCTTTACTTTG
TAGTCACGACAACAACTACAACTACAACAACGACAACGACCACCCCTTTC
ACTGGTTCCACCATCCCCACAACTAGGCCCAAGACCACCAAAAGTATGTT
TCTCCTTTTCAATTCTTTTTGGTTAATTCTATCCATTGGATTTACAGCCC
ATCGTTATTAAGGCTGAATTTTTTGCTTAGTGTTGTCTTTTTTTGTTATT
TGTCTTAAAGTTTTTTTTCACCCCCTCACTTTTCACTTGAATAGAATGAT
GTGATCGATGAGAAATTTTGAGAAACCCACCAAAATGACATTCGGAAATA
TCGGTACCTTTGAGCGATACCTATTATAATATATATATTTCCCTGTTTTA
GGTGTTTGCGCAAAGAGCGGTGAATATTACATTCGCGATTCAAAAGATTG
CAGCAAATTTATCCATTGTCAAGGCTCCCGACCAACGTTCAAAACATGTC
CTGGTGTCCTTGTTTTCGATGTAGAGAAGAATGTTTGTAATTGGCGTTTC
GCAGTCGACTGTGGTGATGGTAAGATATTACAGAAAATACACCACTGTAT
CTTTTGTTACATCCACCACCATTATCTGACTGTTCAATATTAATAGATTA
TTGCAACCACACCTTCTGTTAGGAACAGTATCTATGACAGGAGACTGAGA
TGACCATAATTTAGGCCATTTAGGCAGAATTGAAAAGTGAGAAATTAAAA
TTACAAAGACAATACTAATTTTAAATCCCTTAAATCCTTTTCATAGATAA
ACTATAAAGAATATATATTGAACATTTAAGCCAAGAAATCACTAGAGAGT
AAGGACAACCGTAGGTCAAGCCAAATTTTAATTGCTTTCATTCATCGTGT
AGCAACAACTGCCGCCCCAGTCACAACCACCACAAAAGCCCCTGCAACAA
CACGAAAACCAGAAACAACAATTGCTGCCCCTAAAACAACAACCAAAGCT
CCCGCAACTACGCAGAAAGCACCGAAAACCACTACAGTCGCTGCACCTGA
AACGACAACCGTTGCTGCACCTGCAACCACGACAGCTGCTGCACCTGAAA
CTACTACCAAAGCACCAAAGACTACAACTGCTGCACCCAAAACCACTACA
GTTGCTGCACCAGAAACCACTACCACGGTAGCTGCACCCGAGACAACAGT
GAAAATTGCCACAACAAAAGCAAAACCCACAACAACAGAAGCTCAATGTA
AGTGGAAGGGACTTTAACATCATATTTTTTTCTTGTTCGATTTATTCATT
CCTTCATGTGATTTTTGAAACTTTAAACGATTTTTAGTAGGGTAGGGAAT
TCCATTAAAAACAGTCGCTAGAAATATTGATAATAATGTTCTTCATGTTC
TTCTTCGTTATTAACTTATACAGGTTTTTTATAAATTGTTTATCATTACT
TTTTTTAGCACTTTGCAAAGGCAAGAGCGGCCCTGTTCCACACCCAAAAG
ATTGTACAAAATATTTCCAATGTGTCCATGGACGAAGTTACGATCGATCG
TGTCCAACAGGATTACATTTCGATAAAAAGAACGGATACTGTAATTGGCC
AGCTGTAGCAAAATGCTCTACACATTAACCAATTAAATTGCATATCCTTA
AAATATAGACCAATCAAAATTCTAGATTGGCGCCGATATTTTTTAGGCTT
TTTTTCACGTTTTATCTTTTTAACAATTTTAAATGACTTAAATTTTATAT
TTTTTACATTTTTTTATAAAATTTATTAAATTTTTACTTTGACAATATTA
TTTTTGAAAGCCTGTTTAGGTAAAAAAGAGAGAATTATTTTAAATTACAT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002769XLOC_002769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004891-exon-sc0000049-1575043694:115412..115582TCONS_00004891-exon-sc0000049-1575043694:115412..115582Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1575043694:114514..115029TCONS_00004891-exon-sc0000049-1575043694:114514..115029Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1575043694:113836..114180TCONS_00004891-exon-sc0000049-1575043694:113836..114180Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1575043694:113232..113624TCONS_00004891-exon-sc0000049-1575043694:113232..113624Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1510915933:115412..115582TCONS_00004891-exon-sc0000049-1510915933:115412..115582Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1510915933:114514..115029TCONS_00004891-exon-sc0000049-1510915933:114514..115029Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1510915933:113836..114180TCONS_00004891-exon-sc0000049-1510915933:113836..114180Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1510915933:113232..113624TCONS_00004891-exon-sc0000049-1510915933:113232..113624Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1491911889:115412..115582TCONS_00004891-exon-sc0000049-1491911889:115412..115582Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1491911889:114514..115029TCONS_00004891-exon-sc0000049-1491911889:114514..115029Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1491911889:113836..114180TCONS_00004891-exon-sc0000049-1491911889:113836..114180Clytia hemisphaericaexon
TCONS_00004891-exon-sc0000049-1491911889:113232..113624TCONS_00004891-exon-sc0000049-1491911889:113232..113624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:113232..115582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190935	0	0	0.0976333	0	1.74108e-05	0	0	0.156779	0	0	0.0097624	0.742044	0.86731	14.4708	9.76826	0.254784	0.0853134	0.00908961	0.204238	0	0.424875	0	0.0869294	0	0.18555	0.0892238	0	0.027794	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top