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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004884 ID=TCONS_00004884|Name=TCONS_00004884|organism=Clytia hemisphaerica|type=transcript|length=663bp
GATTTCCAAACACGAGATTGagatgaaaaagaagatttcttccaagaagt
tatACATCACCAAACCAATAAACTACCAGAATAATTTGGATGGTAATTTA
GGTGAATGTCCGTCATCCTTGCGTTGTATGGATCTTTTGTTATCGTATCC
TTGCACATATGATGACCATTGTGGCCCTGGGTTGTCGTGTTGTCAAACCG
CTTGTGGTTACTTCCAAAAGATGTGCCTACCAAAAATAACACGACACTGT
CCGCTACAACTACCATTGATGGGACACCGGGTACCCTGCCATGCGGAAGG
AGACTGTCCACTAAGGCACACGTGTTGTTTGGATCTGGCCAATAATAAGT
ACTGCAGGTCTCTGAGGGAAGACTGAAACTAAATCATTTTCAATGGAGAA
AGAATTTAACGACTTTGCAACTGATAAACGATCAGAATATATGTTGACAC
CGACTATATGACTATAAGACATCACAAATAATTAATGACCATTACATTAT
ACCCTTGTCTTGTTGACCTCGGTGGAATGTATTAACATTTACGATGCATG
TTACAGAGTACGAGAAAAATACAGTATTTCAATTATGATGGAAGAGCTCT
TGTTTTTTTCAGGTGGTATCAGCTGGCATAATTTTATCAAACTTTTGTAA
ATAACACATCAAA Run BLAST on NCBI transcript from alignment at sc0000049:30598..33021- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004884 ID=TCONS_00004884|Name=TCONS_00004884|organism=Clytia hemisphaerica|type=transcript|length=2424bp|location=Sequence derived from alignment at sc0000049:30598..33021- (Clytia hemisphaerica)
GATTTCCAAACACGAGATTGAGATGAAAAAGAAGATTTCTTCCAAGAAGT
TATACATCACCAAACCAATAAACTACCAGAATAATTTGGATGGTAATTTA
GGTAAAAAGGACCAGGACTTATAAATGGATTTTGTCAACACTGATAATTT
TTACTCTAAGATTTATTCACCGTGACAGAATCTTAAAGGGTTCTTGAACT
ATTAACAAGCTTTGTGTAAAAATTGGTTGTAATTAAACAAAATATACTCG
CCCGTTATTGATAAGGACGATATCCTAGAGAAAGTCTGTAAGACCAAGGA
ACTTTAACTTGACTTTTATTTAAGCACGATATCTAGCCCTTCGGGCTTTA
TAAATCTACGGTTAAGTCCAGGAAATATAAACTTTCTCTGTTCATTATTA
TTAAAACCCTTACCCGTATAAGACTAAGAGATATAATGTGACAATCAACC
ATTTCAAAACAAATTAAACTAAAGTAACTTTTATCGCTTTCTACTCCCGA
CCGAGTCCTCTACAGAAACAAAGCCTTACAAGAAACAGCAAACTTACTTT
CTTTTATCCGGAATCACAGGTGAATGTCCGTCATCCTTGCGTTGTATGGA
TCTTTTGTTATCGTATCCTTGCACATATGATGACCATTGTGGCCCTGGGT
TGTCGTGTTGTCAAACCGCTTGTGGTTACTTCCAAAAGATGTGCCTACCA
AAAAGTAAGGATGATAATTAACTCTAAGCTGATATGCGTTTTTTATAAGA
ACATGATTCGATGGCCAAAATATAAAAAACAAGTTCAAACATTTTTGAGC
TTAAAACAAAATGTTAAGAACATTTGGAGCCTTCATAATTGTTTGATCTT
CTTATAAAAAAATGTGGGATGAGGATAATATAAAGAATTCAGGTTTGTAT
TTTATGCGTNACCGAATGCAAACGAAAATGAACGCACGCACGAGATCAAA
ATCAAGGCGACAAGTGAAAACACACAAACAAAGAAAGATATGATTTCCAA
ACACGAGATTGAGATGAAAAAGAAGATTTCTTCCAAGAAGTTATACATCA
CCAAACCAATAAACTACCAGAATAATTTGGATGGTAATTTAGGTAAAAAG
GACCAGGACTTATAAATGGATTTTGTCAACACTGATAATTTTTACTCTAA
GATTTATTCACCGTGACAGAATCTTAAAGGGTTCTTGAACTATTAACAAG
CTTTGTGTAAAAATTGGTTGTAATTAAACAAAATATACTCGCCCGTTATT
GATAAGGACGATATCCTAGAGAAAGTCTGTAAGACCAAGGAACTTTAACT
TGACTTTTATTTAAGCACGATATCTAGCCCTTCGGGCTTTATAAATCTAC
GGTTAAGTCCAGGAAATATAAACTTTCTCTGTTCATTATTATTAAAACCC
TTACCCGTATAAGACTAAGAGATATAATGTGACAATCAACCATTTCAAAA
CAAATTAAACTAAAGTAACTTTTATCGCTTTCTACTCCCGACCGAGTCCT
CTACAGAAACAAAGCCTTACAAGAAACAGCAAACTTACTTTCTTTTATCC
GGAATCACAGGTGAATGTCCGTCATCCTTGCGTTGTATGGATCTTTTGTT
ATCGTATCCTTGCACATATGATGACCATTGTGGCCCTGGGTTGTCGTGTT
GTCAAACCGCTTGTGGTTACTTCCAAAAGATGTGCCTACCAAAAAGTAAG
GATGATAATTAACTCTAAGCTGATATGCGTTTTTTATAAGAACATGATTC
GATGGCCAAAATATAAAAAACAAGTTCAAACATTTTTGAGCTTAAAACAA
AATGTTAAGAACATTTGGAGCCTTCATAATTGTTTGATCTTCTTATAAAA
AAATGTGGGATGAGGATAATATAAAGAATTCAGGTTTGTATTTTATGCGT
AGATTTTAATTTCCCTCTTTTCATATTCGATACCGTTTGTTGAAAAAAGG
GGTTTTGATTTAATTGAACTGTTTTTTCACCATTATTTACTTTCCAGTAA
CACGACACTGTCCGCTACAACTACCATTGATGGGACACCGGGTACCCTGC
CATGCGGAAGGAGACTGTCCACTAAGGCACACGTGTTGTTTGGATCTGGC
CAATAATAAGTACTGCAGGTCTCTGAGGGAAGACTGAAACTAAATCATTT
TCAATGGAGAAAGAATTTAACGACTTTGCAACTGATAAACGATCAGAATA
TATGTTGACACCGACTATATGACTATAAGACATCACAAATAATTAATGAC
CATTACATTATACCCTTGTCTTGTTGACCTCGGTGGAATGTATTAACATT
TACGATGCATGTTACAGAGTACGAGAAAAATACAGTATTTCAATTATGAT
GGAAGAGCTCTTGTTTTTTTCAGGTGGTATCAGCTGGCATAATTTTATCA
AACTTTTGTAAATAACACATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004884-exon-sc0000049-1575043694:32921..33021 | TCONS_00004884-exon-sc0000049-1575043694:32921..33021 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1575043694:31327..31461 | TCONS_00004884-exon-sc0000049-1575043694:31327..31461 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1575043694:30598..31024 | TCONS_00004884-exon-sc0000049-1575043694:30598..31024 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1510915933:32921..33021 | TCONS_00004884-exon-sc0000049-1510915933:32921..33021 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1510915933:31327..31461 | TCONS_00004884-exon-sc0000049-1510915933:31327..31461 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1510915933:30598..31024 | TCONS_00004884-exon-sc0000049-1510915933:30598..31024 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1491911889:32921..33021 | TCONS_00004884-exon-sc0000049-1491911889:32921..33021 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1491911889:31327..31461 | TCONS_00004884-exon-sc0000049-1491911889:31327..31461 | Clytia hemisphaerica | exon |
| TCONS_00004884-exon-sc0000049-1491911889:30598..31024 | TCONS_00004884-exon-sc0000049-1491911889:30598..31024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:30598..33021 - |
Blast
The following BLAST results are available for this feature:
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