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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004879 ID=TCONS_00004879|Name=TCONS_00004879|organism=Clytia hemisphaerica|type=transcript|length=755bp
GCTGGTTATAGAATTTGAGGAAACTAAATTATAAACGTATTTTATACATC
ACTTCGTATGATGGAGAAGAACAATTTTGACGGTTGGTCATTATTGGCGG
TGGGCGAAGAGGCGGTCATCGAACCGCCCAAAAATGGCGGAGAAATGAAC
GTGGAAGATGTAGAGAATGAAATCAACCTGGTGGAAGTGGAAGAAGAACA
GGTCCAGCGAACTCGCGAGAAATGGGTGTTAGTAGCACGTGGTAAAGAAA
AGGAGAAGTACCAAGACGAATGGATCTCATTGGCTCAAGGTAGTGAGATG
GCTGATGACAACTTCTGTCATTCgtcgaaaaaattgaaagcCTGGGCACG
AGAACAACGTGTTTCGGTTTCCTCTATGGAATCCTCATTCTCCAATCAAA
GTGAAGAACGGGAGGCATGGGACCGAAGAATGCTACCAATCCAAATCGAC
GAATTCATTTCGATTCAAGAGAAACATCAATTCACTTTCGTCGATCGTAA
AGGACGAATGAAGGTGTTGAAGAAGCACGTGTATAATAATCAGAATGGTC
ACGTGTCCAACATGGCGCATGATGATGAGTTACATAAGAAACATTCCATG
TTCTTCGTTGAGAACGCCATGAGAAATCTTCAAGATTATCAGTTGAGAAT
GAGAGGATTGTTAATGAAAATGTATTAATGGATATTAGTTCACAAGTGAC
TCGAAGacgaaagaagaaaatgaatagAACTGTGTACACACCAGTACAAC
CATAA Run BLAST on NCBI transcript from alignment at sc0000049:700738..703579+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004879 ID=TCONS_00004879|Name=TCONS_00004879|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at sc0000049:700738..703579+ (Clytia hemisphaerica)
GCTGGTTATAGAATTTGAGGAAACTAAATTATAAACGTATTTTATACATG
TAAGTAAGGCTAGATTTGTTCGTGAATTATAATGTTGGTGGGTCggtaaa
gttttgatttttagtcTTTTGTATAACTTGCTTTACTATGATTTATATGA
TTACCCtttggagatttttcaaactttcaactaTGATGAGTAAATGCCGT
CACAGTTAcctataaaatcattttttgccAACTTTTCACCTCTCACTTTC
ACTAGCTCATCAACAGCTTAGTTTTATGTATTCTACAGATAAGTCTGTTG
TATCAAACGACTGACCAAGCTCTCGTCTAGTGTACTGTAATAACTTTTTG
TTGTCATCTTGTCTAGCACTTCGTATGATGGAGAAGAACAATTTTGACGG
TTGGTCATTATTGGCGGTGGGCGAAGAGGCGGTCATCGAACCGCCCAAAA
ATGGCGGAGAAATGAACGTGGAAGATGTAGAGAATGAAATCAACCTGGTG
GAAGTGGAAGAAGAACAGGTGATATCTTACTCATTGGTGACGTCATTCCT
TCTTTCTTGAACCACCTTAAATCAGCCTCTACTACAGTTCGCTcgcgcta
attcgaactcgaacgggaagAAAGTACCTTNCATTCCTTCTTTCTTGAAC
CACCCGAAGATCAGCCTCTACTACAGTTcgctctctttaattcgaactcg
aacgggaagaaagtattttaagaggttCTCCTTTACGGGGAACGGGAATT
ATTTCGAATtatatagaaagattcgaaaaaaaagaagttcGAATTTAAGC
GAGAGTCTTGTAGTTTTTATATAAGTCTTCGTATAAAACGTTTCAAAAAT
GGTATCCTGTATTGTCAaatatactctcgggtacctaatagccgggggga
ttggaataagcggggggggggggggggggaaggggggggggggggggggg
aagggggggggggggggggggaagggggggggggggggggggaagggggg
gggggggggggggaaggggggggggggggggattgtagcgagcacctcac
taaaaaccgggatttttcatctcgtttcttagtgagttccactttgacga
tttttgaaaaatagaagcctttcaagtgttttgacgcaaattcggttatt
ttgctactgcaggagcttcgaaagttaaaagtgacgtcaaaaaatcgaat
gtttagagcccgaaaacccggactcaaaacattcgaaaaagtcgcaaagt
ggaatagacgttaattgcgtaaaaaaaaacgcgggtgacgtctagtatag
gctaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGggggggggattggaataaaaaattttgaaaaggaggctaata
cagcagaattaggacaaaagaggggacttattcaaaagaattttcccaca
aattaataagcggggggggttggaataagaatgtcctgggtggaaaattt
tcgaaaaattaattagcggggaggggggacggctattaggtacccgagag
tagtaaTTTAGGACGATAAAACGAAAGTATTGAAATGATTAGAATGTCAT
GAATTTCAATGCTTTTGTTCTATTGTCCTAAATTCATGTGGCAATACGAA
ATACCATTTTTGACATTGCTTTTCTAAAATCACGGAGGTTTCACTTATCT
AAAgtgaggccaatttaatttggtTTTTTACGGGCCAACCTACCCATAAA
AGAGGGGCTGgtcggcaaaaaaaaacaaatataaaagtagaatttcacct
atgAAATcccctaaaaaggcagcaaaaactactacttCTTGACACAAAtt
cgaaatagaaaataaaaaggtaCAAAAAGGTCGAATTCGTGGATAAGAAT
AAAAATGGAaccaaaaattctcaaaaccttggaaaaactaccaaaatttt
ggcAGTCTGTAacgcaatgaaaataaaaatgtactaccaaaatcaatttt
atttttatttcgatttttggaatttcagtgtcggtcgggcccgtaagaca
actaatcaaattggtctcgcctaacatGGTTTTTGTCTGTCTAGACACTC
GCTCACTTTCTCACTTATTTATCACTCTCGTTTTTCAGGTCCAGCGAACT
CGCGAGAAATGGGTGTTAGTAGCACGTGGTAAAGAAAAGGAGAAGTACCA
AGACGAATGGATCTCATTGGCTCAAGGTAGTGAGATGGCTGATGACAACT
TCTGTCATTCgtcgaaaaaattgaaagcCTGGGCACGAGAACAACGTGTT
TCGGTTTCCTCTATGGAATCCTCATTCTCCAATCAAAGTGAAGAACGGGA
GGCATGGGACCGAAGAATGCTACCAATCCAAATCGACGAATTCATTTCGA
TTCAAGAGAAACATCAATTCACTTTCGTCGATCGTAAAGGACGAATGAAG
GTGTTGAAGAAGCACGTGTATAATAATCAGAATGGTCACGTGTCCAACAT
GGCGCATGATGATGAGTTACATAAGAAACATTCCATGTTCTTCGTTGAGA
ACGCCATGAGAAATCTTCAAGATTATCAGTTGAGAATGAGAGGATTGTTA
ATGAAAATGTATTAATGGATATTAGTTCACAAGTGACTCGAAGacgaaag
aagaaaatgaatagAACTGTGTACACACCAGTACAACCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004879-exon-sc0000049-1491911889:700738..700786 | TCONS_00004879-exon-sc0000049-1491911889:700738..700786 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1510915933:700738..700786 | TCONS_00004879-exon-sc0000049-1510915933:700738..700786 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1575043694:700738..700786 | TCONS_00004879-exon-sc0000049-1575043694:700738..700786 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1491911889:701104..701255 | TCONS_00004879-exon-sc0000049-1491911889:701104..701255 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1510915933:701104..701255 | TCONS_00004879-exon-sc0000049-1510915933:701104..701255 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1575043694:701104..701255 | TCONS_00004879-exon-sc0000049-1575043694:701104..701255 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1491911889:703026..703579 | TCONS_00004879-exon-sc0000049-1491911889:703026..703579 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1510915933:703026..703579 | TCONS_00004879-exon-sc0000049-1510915933:703026..703579 | Clytia hemisphaerica | exon |
| TCONS_00004879-exon-sc0000049-1575043694:703026..703579 | TCONS_00004879-exon-sc0000049-1575043694:703026..703579 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:700738..703579 + |
Blast
The following BLAST results are available for this feature:
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