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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004869 ID=TCONS_00004869|Name=TCONS_00004869|organism=Clytia hemisphaerica|type=transcript|length=1943bpRun BLAST on NCBI transcript from alignment at sc0000049:521398..524305+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004869 ID=TCONS_00004869|Name=TCONS_00004869|organism=Clytia hemisphaerica|type=transcript|length=2908bp|location=Sequence derived from alignment at sc0000049:521398..524305+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004869 vs. Swiss-Prot (Human)
Match: ZN665 (Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2) HSP 1 Score: 227.254 bits (578), Expect = 7.376e-65 Identity = 149/424 (35.14%), Postives = 206/424 (48.58%), Query Frame = 1
Query: 481 NRLNGFPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKHLERVDCSERPFACELCEQTFRKKKSVEEHMLRDHGVEKDYECQKCKKVFKMEKLLKMHEKRTHGVVKCYCTLCPQRVFSSH 1749
NR + C C +V + L H RIHTGEKP+ C C FT ++L H + HTGEKP+KC+ CG F+Q ++L GH R H GEKP+KC CG+ F A L TH+ IH + +KC C + + + H + HT + + K ++L TI G K + CNEC V L H+R HTGE+PY C+ C S L +H + H+ EKPF+C C K F Q HL H++IH K +C +C A+ S L +H H +KP+ C DC F + L H+ K Y CD CG F++ L +H RV E+P+ C C + F S+ H H +K Y+C C KVF+ L +H++ G C C + FS H
Sbjct: 108 NRGKHYKCDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASH-RRIHTGEKPYKCNECG--KAFSVRSSLTTHQTIHTGEK----PYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIH--TGEKPYKCNDCGKVFTQNSHLASHRGIHSGEK--PYKCDECGKAFSQTSQLARHW-RVHTGEKPYKCNECGKAFSVHSSLTIHQT-IHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECG-KAFSVH 517 HSP 2 Score: 215.312 bits (547), Expect = 1.459e-60 Identity = 147/418 (35.17%), Postives = 196/418 (46.89%), Query Frame = 1
Query: 496 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKHLERVDCSERPFACELCEQTFRKKKSVEEHMLRDHGVEKDYECQKCKKVFKMEKLLKMHEKRTHGVVKCY-CTLCPQRVFS 1743
+ C+ C +V + +L H RIHTGEKP+ C C F + L H + HTGEKP+KC CG FTQ + L H R H GEKP+KC CG+ F L TH+ IH + +KC C + + + +H + HT + + K + L I G K F CNEC V T L H+R HTGE+PY C C S L H H+ EKP++C C K F Q HL H+ IH K KC +C A+ + S L HW H +KP+ C +C F L H+ K Y C+ CG VF L H +R+ E+P+ C C + F ++ H + H EK Y+C +C KVF L H +R H K Y C C + FS
Sbjct: 169 YKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIHTGEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKH-RRIHTGEKPYKCNECG--KAFSMHSNLTKHQIIHTGEK----PFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVH--TGEKPYKCNECGKAFSVHSSLTIHQTIHTGQK--PYKCNDCGKVFRHNSYLAIH-QRIHTGEKPYKCNECGKAFSVHSNLATHQV-IHTGEKPYKCNECGKVFTQNSHLANH-RRIHTGEKPYRCNECG-KAFS 571 HSP 3 Score: 177.948 bits (450), Expect = 1.351e-47 Identity = 115/340 (33.82%), Postives = 164/340 (48.24%), Query Frame = 1
Query: 496 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSF--DQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKH 1506
+ C+ C +V L H RIHTGEKP+ C C F+ ++L +H + HTGEKPFKC+ C FTQ + L H R H GEKP++C CG+ F L TH+ IH + +KC C + + + H + H+ + D+ A + + + L + G K + CNEC + SL IH+ HTG++PY C+ C S L H H+ EKP++C C K+F +L HQ IH K KC +C + + S L +H H +KP+ C +C F L H K Y C++CG VF + NL KH
Sbjct: 281 YKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASH-RGIHSGEKPYKCDECGKAFS----QTSQLARHWRVHTGEK----PYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIH--TGEKPYRCNECGKAFSVRSTLTTHMAVHTGDK--PYKCNQCGKVFTQNSNLAKH 607 HSP 4 Score: 161.77 bits (408), Expect = 2.925e-42 Identity = 93/254 (36.61%), Postives = 126/254 (49.61%), Query Frame = 1
Query: 496 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIH 1257
+ C C + + + SL H IHTGEKP+ C C FT + L H H+GEKP+KCD CG F+QT+ L H R H GEKP+KC CG+ F L H+ IH + +KC C + + + H Q HT + + K + L I G K + CNEC V T L H+R HTGE+PY C+ C S L H+ H+ +KP++C C K F Q +L KH++IH
Sbjct: 365 YRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIH-QRIHTGEKPYKCNECG--KAFSVHSNLATHQVIHTGEK----PYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIH 611 HSP 5 Score: 108.227 bits (269), Expect = 2.072e-24 Identity = 70/223 (31.39%), Postives = 99/223 (44.39%), Query Frame = 1
Query: 427 VFQTNLEKPLQSGILKGLNRLNGFPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTG 1095
VF N GI G + C C + + L H R+HTGEKP+ C C F+ + L H HTG+KP+KC+ CG F + L H R H GEKP+KC CG+ F L TH+ IH + +KC C + + + H + HT + + K + L + G K + CN+C V T +L H+R H+G
Sbjct: 401 VFTQNSHLASHRGIHSGEKP---YKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANH-RRIHTGEKPYRCNECG--KAFSVRSTLTTHMAVHTGDK----PYKCNQCGKVFTQNSNLAKHRRIHSG 613 The following BLAST results are available for this feature:
BLAST of TCONS_00004869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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