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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004867 ID=TCONS_00004867|Name=TCONS_00004867|organism=Clytia hemisphaerica|type=transcript|length=1821bpRun BLAST on NCBI protein sequence of TCONS_00004867-protein >TCONS_00004867-protein ID=TCONS_00004867-protein|Name=TCONS_00004867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MAVNNPSLSSSSEALSDMSADEGGIMSKGASQENRITSLEQQNRVLKMELRun BLAST on NCBI transcript from alignment at sc0000049:489731..507182+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004867 ID=TCONS_00004867|Name=TCONS_00004867|organism=Clytia hemisphaerica|type=transcript|length=17452bp|location=Sequence derived from alignment at sc0000049:489731..507182+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:489731..507182+ >TCONS_00004867 ID=TCONS_00004867|Name=TCONS_00004867|organism=Clytia hemisphaerica|type=CDS|length=12231bp|location=Sequence derived from alignment at sc0000049:489731..507182+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004867 vs. Swiss-Prot (Human)
Match: CCDC6 (Coiled-coil domain-containing protein 6 OS=Homo sapiens GN=CCDC6 PE=1 SV=2) HSP 1 Score: 339.732 bits (870), Expect = 4.620e-109 Identity = 191/284 (67.25%), Postives = 245/284 (86.27%), Query Frame = 3
Query: 375 NRITSLEQQNRVLKMELEMYKLRCKQMQEENKNLRQASVSIQAKAEQEEEFISNTLMKKINSLKKEKEVLAMNYEQEEEYLTNDLSKKLMQLRQEKVNLEQTLEREQEFQVNKLIRRIEKLEAETLAKQQTLEQLRKEKVDLENTLEQEQEALVNRLWIRMEKLETEKRMLQGKLDQPLSEPASPRKIELQEINVEDLSVNVNVLRDEVIKLRKQLVAAQQEHTKDMTKFETEEHHLREENVRLQRKLLLEMXXXXXXXXXXXXXXXXXXMDDERHFNELTAHG 1226
NR+ SL+Q+N+VLK+ELE YKL+CK +QEEN++LR+ASV+IQA+AEQEEEFISNTL KKI +L+KEKE LA+NYE+EEE+LTN+LS+KLMQL+ EK LEQ LE+EQEFQVNKL+++I+KLE +T++KQ TLEQLR+EK+DLENTLEQEQEALVNRLW RM+KLE EKR+LQ KLDQP+S P SPR I ++ + E++ ++ L++EV +L+KQL AAQ +H++ M ++ EE H+REEN+RLQRKL EMERRE L RQLSESESSLEMDDER+FNE++A G
Sbjct: 61 NRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKIQALQKEKETLAVNYEKEEEFLTNELSRKLMQLQHEKAELEQHLEQEQEFQVNKLMKKIKKLENDTISKQLTLEQLRREKIDLENTLEQEQEALVNRLWKRMDKLEAEKRILQEKLDQPVSAPPSPRDISMEIDSPENMMRHIRFLKNEVERLKKQLRAAQLQHSEKMAQYLEEERHMREENLRLQRKLQREMERREALCRQLSESESSLEMDDERYFNEMSAQG 344 The following BLAST results are available for this feature:
BLAST of TCONS_00004867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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