TCONS_00004866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004866
Unique NameTCONS_00004866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004866 ID=TCONS_00004866|Name=TCONS_00004866|organism=Clytia hemisphaerica|type=transcript|length=2686bp
attgtaaggttgattctaaaaaagaatagtcgtttctttagaccactacg
ttTAAAGCAACTTTGgcttttattgtattttggtcggCCTTTTTCCAGGG
CAAGTTTATGTATTctagataaatcgagggggacggtataaagcaaagtt
gaggTCTCCAAAATCACTGTCTACTTTGCTTGatgacggtaaaaacacca
agataccgttgtctgtttaggtgagcaaaggcgatatagtgccatacatc
aactatcgactttgttttgtatcatttcacgTATAGTCGCCCTCGATACT
CCAATACATAAACCCAGTATAGATTGCCATGCGGGAGAGCTTCAAGTCAG
AAAGAATAATAATTTGTAGAAAATGAATTTGTCAATACATTTATAGTATT
TATAGGTGAAAATGAATTTGTCAAGATTTTGTAGAATCTTGAGGAGAGCC
AGATGTTCCCGCATTGAGTGCGAGTAGGCCTCCATTCTACGCGGGAGTAT
ATGGTTCTCCTCCGTAACGTATTTAATATTTCTCAATGTTTCGTGCGTGT
CTATTGTCTGTTTTATATATTGTCTTTGTCTTGTCTTGTCCCTTGTGAAT
TTgtattgtgacgtcacttaATGTTTGTGTACATGCTTAGTTCTTTGTTG
GGCTTGCGTCTTCTGTGTGTTTTCCAGTGCTTCGTTTTCAGTGTGCTTTT
GTTTGGGGGTTTGcgtcttttctgtttgccagcCTTTCGTTTCTTTGGGT
CTAACTTAGgatattttcagtttcttgtAACTAGTTTATGGCAAGTTTTC
TAACTTTTAATTTTGTGCATTTGTTTTTAGCGTCCCTGAAATATATGGTC
AGAATATACTCATCGGGATCAGTGATATATTCCTCGCTACTGCGTTAGCA
GTaacatatagtttgttcttataaacaaaagtGTACCCAGCTTATGTTTG
AAATGGTCATATTTCAAATGGAATATTTTGTACAAAACATTTCTATTGCA
TACAATTTCAGATTATGTTATGAATTTAAATTGTTATGAGTTTGTTACAA
TCTTCTGGTTTATAGTTTATGACATGTGACCTGTGTCTGTAACCTGTgtc
tgtaacctgtgacctgtgacctgcgatgAACTAATCGCAAAAGTGGCTAC
TTATCGATTTTAACCAAAGAATTACAAGTagagaatgaatgaatgaatta
tttcatagtttttaaaatagataaaaataaaacaaaagttaaacAAAATA
TGGTGTCAGCAGGTGAACTCTTCCAGAAAGCATGCAACCTTAtctatttg
ctttttcaaatgGCAATCATTTGGCCGTGGAGTATGATCAAGTATTTCTT
gcctaaaaataagaaagacATCTCAGGGGAGATTCTATTTATGTCGGGTG
CAGGAAGCGGTATCGGTCGTCTTATGTCCATCAAGTTTGCTGAATTGGGT
GCAATCGTCATTTGTACTGACCTCAATGCGGAAACAGCTGAACAAACCGC
TAACACAATCAAATcAAATGGCGGTAAAGCATATAGCTATCAGTTAGACG
TGACAGATCGTCTGAAAGTGTACGCACTTGCTGAACAAATCAAACGTGAA
GTTGGTGACGTCACCATGTTGATCAACAATGCAGGTATAGTGACCGGGAA
GAAGATTTTGGACGCACCTGACCAATTGATGGTCAAAACTATGGAAGTGA
ACACCATCTCACATTTCTGGACTTTAAAAGCATTCTTGCCATCTATGTTG
GAGAAGAATCACGGACACATTGTGACAGTTTCATCCATTGCCGGTCATTC
GGGAGCTCCTGCCATGGTGGACTATTGTGCTTCCAAGTTTGGTGCTGTTG
GTATTCACGAATCGTTGACTGTCGAGTTGATCGGTATTCCTGACAATAAG
ATCCAAACTTCTTGTGTTTGTCCTTTCTTCATCAAGACTGGCATGTTCGA
TGGTGTGTCTAGTGGtTCTCCCATCTTGTTGCCACTGTTGGAGGTGGATT
TCACAGTGGAGAGCATAGTGTGTGGTGTTTTGAATGACGAAGAAACCATC
TACGTTCCAAGAATGCTTCTACCTCTCATGATCCTCAAAAAttTGGCACC
GAGCGCATTGATGAAGCCATTGTCTGATTATTTGAAGCTGCACACACAGA
TGAACGATTTTAAGGGACGAAAAGAAGGCAAGAAGGCGAAGTAAAACATC
ATCTGAACCATTCTCACATTCTTCAAAATTGGCCAATGGGTCTCAAATGA
TAGGGGGTATAATGATTAAGGAATTGCTTTATTTACCGTGactattaaaa
tgttttttaatgatTAAACTCTTTTCAATATTGCAACTTTTTCAACGGTT
TGCTTGGGCAAACCCATCCAACTAAGATTCAAAATCTCGATTTTCTTTTT
GCGATGAAAGAGAGCTTGCGAAACTTTTACATCTATACATCCAGATCAAC
AAAACTAGATGGCAATATTGGTCTTTTCATACACATATTGTGAAATACGT
TGATTCTCTTTACAGTCATTGGATTTTTCAGGGCGTTATTCATCTTTTTT
GGCAACTTGTAACATAATGCAATTATCTCTGTTTgttcaacgatgtaaaa
ataatagataaccaacttgccttgattctcaaaaaacatccgtgttacgg
ttgtaaaaatattaatgacattttgcatcgtaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000049:480371..485082+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004866 ID=TCONS_00004866|Name=TCONS_00004866|organism=Clytia hemisphaerica|type=transcript|length=4712bp|location=Sequence derived from alignment at sc0000049:480371..485082+ (Clytia hemisphaerica)
attgtaaggttgattctaaaaaagaatagtcgtttctttagaccactacg
ttTAAAGCAACTTTGgcttttattgtattttggtcggCCTTTTTCCAGGG
CAAGTTTATGTATTctagataaatcgagggggacggtataaagcaaagtt
gaggTCTCCAAAATCACTGTCTACTTTGCTTGatgacggtaaaaacacca
agataccgttgtctgtttaggtgagcaaaggcgatatagtgccatacatc
aactatcgactttgttttgtatcatttcacgTATAGTCGCCCTCGATACT
CCAATACATAAACCCAGTATAGATTGCCATGCGGGAGAGCTTCAAGTCAG
AAAGAATAATAATTTGTAGAAAATGAATTTGTCAATACATTTATAGTATT
TATAGGTGAAAATGAATTTGTCAAGATTTTGTAGAATCTTGAGGAGAGCC
AGATGTTCCCGCATTGAGTGCGAGTAGGCCTCCATTCTACGCGGGAGTAT
ATGGTTCTCCTCCGTAACGTATTTAATATTTCTCAATGTTTCGTGCGTGT
CTATTGTCTGTTTTATATATTGTCTTTGTCTTGTCTTGTCCCTTGTGAAT
TTgtattgtgacgtcacttaATGTTTGTGTACATGCTTAGTTCTTTGTTG
GGCTTGCGTCTTCTGTGTGTTTTCCAGTGCTTCGTTTTCAGTGTGCTTTT
GTTTGGGGGTTTGcgtcttttctgtttgccagcCTTTCGTTTCTTTGGGT
CTAACTTAGgatattttcagtttcttgtAACTAGTTTATGGCAAGTTTTC
TAACTTTTAATTTTGTGCATTTGTTTTTAGCGTCCCTGAAATATATGGTC
AGAATATACTCATCGGGATCAGTGATATATTCCTCGCTACTGCGTTAGCA
GTaacatatagtttgttcttataaacaaaagtGTACCCAGCTTATGTTTG
AAATGGTCATATTTCAAATGGAATATTTTGTACAAAACATTTCTATTGCA
TACAATTTCAGATTATGTTATGAATTTAAATTGTTATGAGTTTGTTACAA
TCTTCTGGTTTATAGTTTATGACATGTGACCTGTGTCTGTAACCTGTgtc
tgtaacctgtgacctgtgacctgcgatgAACTAATCGCAAAAGTGGCTAC
TTATCGATTTTAACCAAAGAATTACAAGTagagaatgaatgaatgaatta
tttcatagtttttaaaatagataaaaataaaacaaaagttaaacAAAATA
TGGTGTCAGCAGGTGAACTCTTCCAGAAAGCATGCAACCTTAtctatttg
ctttttcaaatgGCAATCATTTGGCCGTGGAGTATGATCAAGTATTTCTT
gcctaaaaataagaaagacATCTCAGGGGAGGTAAGATCTTTATTAAAAT
TAatataaatcatttttgaaacagTTTTTCCTCAAAATGCATAAAGCTAT
AAGTGGCACCTGGGCCTCAAGTAAACCAGAAAAATGGTAATTAACGTAGG
GTAATATATGGCATTATTTGCTATAGGATTTACGATATGATACGTTAATT
ACTTGGTTGTTATTTCAAACTTTTATCATTTTAGATTCTATTTATGTCGG
GTGCAGGAAGCGGTATCGGTCGTCTTATGTCCATCAAGTTTGCTGAATTG
GGTGCAATCGTCATTTGTACTGACCTCAATGCGGAAACAGCTGAACAAAC
CGCTAACACAATCAAATGTAAGAGAAATGAATTATTCAAATATTCAAGTC
GTACTGAAGTTTTTCCTTGGGATATTGGATTATTCCAAGTCGATTTCGAA
AAgtaaaaacctaaaaataaggAGCAGTTTGGATCTTCCATTCattattt
gatctttttctttgattttcagcAAATGGCGGTAAAGCATATAGCTATCA
GTTAGACGTGACAGATCGTCTGAAAGTGTACGCACTTGCTGAACAAATCA
AACGTGAAGTTGGTGACGTCACCATGTTGATCAACAATGCAGGTATAGTG
ACCGGGAAGAAGATTTTGGACGCACCTGACCAATTGATGGTCAAAACTAT
GGAAGTGAACACCATCTCACATTTCTGGGTAAGCCTTATCATCCTCTCCT
GCGCCGTGATTGATAAGTCCTgagttgtttatattttatGCTTGATGTAT
CCAGGAAGAGGTTATGGCAGAATAAATACACATCTTTTTTTGTTGCAGAC
TTTAAAAGCATTCTTGCCATCTATGTTGGAGAAGAATCACGGACACATTG
TGACAGTTTCATCCATTGCCGGTCATTCGGGAGCTCCTGCCATGGTGGAC
TATTGTGCTTCCAAGTTTGGTGCTGTTGGTATTCACGAATCGTTGACTGT
CGAGTTGATCGGTATTCCTGACAATAAGATCCAAACTTCTTGTGTTTGTC
CTTTCTTCATCAAGACTGGCATGTTCGATGGTGTGTCTAGTGGGTCAGTA
TATGTTTTGTTATGATAAAAACAGCTTGTCTTTTCCTCTTCGACAGTCTT
ATGCCACAAACTACAGCATTGATGGGTTACCTTCTTTGATCTCAAATACG
TCGAAATTCTtcacttttaacttttgaaaaataaaagtgtCATAATAAGT
ATAGGCAAACAATCAGTGTTCAATGCCATGTAGATAACTTTCACTTGGTA
TCTAACAggtattttttattattatttagtTCTCCCATCTTGTTGCCACT
GTTGGAGGTGGATTTCACAGTGGAGAGCATAGTGTGTGGTGTTTTGAATG
ACGAAGAAACCATCTACGTTCCAAGAATGCTTCTACCTCTCATGATCCTC
AAAAAGTAAGCTTCGTTCCATTCTGTcccaaaacaaaacttttaccggct
gtttaaaaaaacgtgtatcgtaATACTGAAAAAACTGTTATCAATCTGAA
CTTTTTGgcattgaaaaaaagaattcaaacgttcattttgagctattata
aaTTTGGTTCGGCCGCTCAAAACTTATAAATTTATAAAAGTTATCCTTCT
GTATCCTCTTTCACTAGAAAATAGTGTGATTTTTGTTGTGACATAATTTA
AAGTATCAATGGCTGTAATGAAAATACTTTTCGgtcttcttctttcttgt
ttattttgttaatCTTAACATTGGAAAATCATTGGAATCTTTGAATGTTC
AGTAGGTATGAAAAAGACTTTTAAAGACttaatcaatttgaaatttcgta
ACCCTTTTCTTAATGATGTTTTTTGACGAAATTTCTTTCGTAATCTCGAT
ATATTTTTTGGCGGGAGTaccaaatttaatgtataattaGCTCACAATTC
AAGCCTTCCTTCTTTCCAATGGTGAGGATTTTTCAAAGACTAAGAAAGTC
GATTCTTCGATTTCTAATAAGGGCTTGGCAGTGAACTTGGAAAGTGTCAG
GTTTTACATTTGGTAGGGTCGAGGTTTCAGCTGTTAACGTAAAACTATAC
TTTAGCAGTGCAgacttttatgattttttttacctttttctcGAAAGTTG
ATGTCTTTTCTGTCgatttgcaaaagttttttaCATCCAcgaaaactttt
atcaaaatttgacactaaaatgttcttaatcatGATATAACTCTAACGAC
TTTAAGTATTTCAGTCCTAAAACCTTTTGATAGTAAGTAAAAAGCACATA
TCAAATCTTAAAGGATCAAACTTTGGTAGGATAAGTTTCAATTTTGGCAT
TCATGTCATGTGATTCAggcatttatcaaaaaaaatcgttaaaattGCTA
AAATCGCAAATTTCACATTAAAGAGGGTGAGGTTTTCTGACAGTATGGTC
CGCGGAAGTTTATCCTCGACAGAAATTATATTTCCTTCcaatttgggaaa
ttttttacTAGTTAAAATTTGTACAGCCAAAGTACAAATAGATTACTTTA
AATAATCTGGCGTACGTCCCTCTTGACCATCAAGGGGTTTATCTATATCG
CCTATGATCACAGAGATCTTTCTCAATTCAAATTCAGTTCGTCTAAATAT
TTCATTTGTCACCCGAAAACTAAATTTCTGAAGAAACAATGGTAGGGAAA
AGAGTTTTGAAAATCCCCTGGAACAGTTGGATGTAAAAATTGACttcgtt
tttgttttgtttttcagttTGGCACCGAGCGCATTGATGAAGCCATTGTC
TGATTATTTGAAGCTGCACACACAGATGAACGATTTTAAGGGACGAAAAG
AAGGCAAGAAGGCGAAGTAAAACATCATCTGAACCATTCTCACATTCTTC
AAAATTGGCCAATGGGTCTCAAATGATAGGGGGTATAATGATTAAGGAAT
TGCTTTATTTACCGTGactattaaaatgttttttaatgatTAAACTCTTT
TCAATATTGCAACTTTTTCAACGGTTTGCTTGGGCAAACCCATCCAACTA
AGATTCAAAATCTCGATTTTCTTTTTGCGATGAAAGAGAGCTTGCGAAAC
TTTTACATCTATACATCCAGATCAACAAAACTAGATGGCAATATTGGTCT
TTTCATACACATATTGTGAAATACGTTGATTCTCTTTACAGTCATTGGAT
TTTTCAGGGCGTTATTCATCTTTTTTGGCAACTTGTAACATAATGCAATT
ATCTCTGTTTgttcaacgatgtaaaaataatagataaccaacttgccttg
attctcaaaaaacatccgtgttacggttgtaaaaatattaatgacatttt
gcatcgtaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002756XLOC_002756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004866-exon-sc0000049-1491911889:480371..481751TCONS_00004866-exon-sc0000049-1491911889:480371..481751Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1510915933:480371..481751TCONS_00004866-exon-sc0000049-1510915933:480371..481751Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1575043694:480371..481751TCONS_00004866-exon-sc0000049-1575043694:480371..481751Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1491911889:481955..482087TCONS_00004866-exon-sc0000049-1491911889:481955..482087Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1510915933:481955..482087TCONS_00004866-exon-sc0000049-1510915933:481955..482087Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1575043694:481955..482087TCONS_00004866-exon-sc0000049-1575043694:481955..482087Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1491911889:482243..482448TCONS_00004866-exon-sc0000049-1491911889:482243..482448Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1510915933:482243..482448TCONS_00004866-exon-sc0000049-1510915933:482243..482448Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1575043694:482243..482448TCONS_00004866-exon-sc0000049-1575043694:482243..482448Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1491911889:482569..482813TCONS_00004866-exon-sc0000049-1491911889:482569..482813Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1510915933:482569..482813TCONS_00004866-exon-sc0000049-1510915933:482569..482813Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1575043694:482569..482813TCONS_00004866-exon-sc0000049-1575043694:482569..482813Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1491911889:483050..483175TCONS_00004866-exon-sc0000049-1491911889:483050..483175Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1510915933:483050..483175TCONS_00004866-exon-sc0000049-1510915933:483050..483175Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1575043694:483050..483175TCONS_00004866-exon-sc0000049-1575043694:483050..483175Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1491911889:484488..485082TCONS_00004866-exon-sc0000049-1491911889:484488..485082Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1510915933:484488..485082TCONS_00004866-exon-sc0000049-1510915933:484488..485082Clytia hemisphaericaexon
TCONS_00004866-exon-sc0000049-1575043694:484488..485082TCONS_00004866-exon-sc0000049-1575043694:484488..485082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:480371..485082 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06948	2.71219	2.59444	2.63664	1.18187	0.795567	0.876356	0.820434	1.22985	1.35776	0.96937	1.10428	1.10742	1.49946	1.12954	1.58906	1.50024	1.47875	0.815473	1.31067	1.28812	1.78499	1.21099	1.39275	1.74125	1.83506	3.39429	2.93429	3.12556	2.24842
Blast
[Close]
BLAST of TCONS_00004866 vs. Swiss-Prot (Human)
Match: RDHE2 (Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 2.269e-84
Identity = 131/283 (46.29%), Postives = 195/283 (68.90%), Query Frame = 2 
Query: 1331 SMIKYFLPKNKKDISGEILFMSGAGSGIGRLMSIKFAELGAIVICTDLNAETAEQTANTIKSNGG-KAYSYQLDVTDRLKVYALAEQIKREVGDVTMLINNAGIVTGKKILDAPDQLMVKTMEVNTISHFWTLKAFLPSMLEKNHGHIVTVSSIAGHSGAPAMVDYCASKFGAVGIHESLTVELIGIPDNKIQTSCVCPFFIKTGMFDGVSSGSPILLPLLEVDFTVESIVCGVLNDEETIYVPRMLLPLMILKNLAPSALMKPLSDYLKLHTQMNDFKGRKE 2176
            +MI   LPK +K+++GEI+ ++GAGSG+GRL++++FA LG++++  D+N E  E+T    +  G  + ++Y  D + +  VY +A+Q+K+EVGDV++LINNAGIVTGKK LD PD+LM K+ +VN  +H WT KAFLP+M+  +HGH+V +SS AG SG   + DYCASKF A G  ES+ VE        I+T+ VCPFFIKTGMF+G ++G P LLP+LE  + VE IV  +L ++  +Y+P++L  +M LK+  P      ++DYL +   M+ F  +K+
Sbjct:   25 AMIFALLPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGILHAMDGFVDQKK 307
The following BLAST results are available for this feature:
BLAST of TCONS_00004866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDHE22.269e-8446.29Epidermal retinol dehydrogenase 2 OS=Homo sapiens ... [more]
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