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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004864 ID=TCONS_00004864|Name=TCONS_00004864|organism=Clytia hemisphaerica|type=transcript|length=345bp
TTAAATGGGTCCAGCAGTCCAGGCTCTGACATCTGACATCTGACAAGGGT
TTTGATATAAAAACTCAATAAAAAAGCATTATTTTAGAGTTATTGTTAAA
GGTATTAACCTACAAACTGAAGAAACATATGAAGTTTAAGGTATTCGAAA
TCGATACATCGAGTAATGGTACAGCTAATCAAATATCCGAATTGAGAAGT
TAACATCACACGCGTTAGATCACACAGTATACAGCAAATTATAAAAGTAA
TATTGATGATTCGTGGGAAATAAATGGCATAATGGAGAATTCCGTTAGAG
GGAACAAAAGTTTACAGGTAAGTCTTAGACAAGATTGAAACCCTG Run BLAST on NCBI transcript from alignment at sc0000049:464738..467792+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004864 ID=TCONS_00004864|Name=TCONS_00004864|organism=Clytia hemisphaerica|type=transcript|length=3055bp|location=Sequence derived from alignment at sc0000049:464738..467792+ (Clytia hemisphaerica)
TTAAATGGGTCCAGCAGTCCAGGCTCTGACATCTGACATCTGACAAGGGT
TTTGATATAAAAACTCAATAAAAAAGCATTATTTTAGAGTTATTGTTAAA
GGTATTAACCTACAAACTGAAGAAACATATGAAGTTTAAGGTATAAAAGT
tgtaatatttatttttgtggTTTTCTCCCCTGCCTGCTGGGGGGAAGCGA
AGTTAGATTAGTCAATCTTCGGAATCTTCAATTTAggctagaaatctaag
ctagtttgattcagtcaggataaatctgatgttaagttgtgactgaataa
ctagttTAGggatagcctggatatccagactgcAAACTATTTCACTGTCT
AGTTTTTTATTATCTTGTCTCttgcagttagtcacactagcatcccgcca
aaatgcgtatcaaagattaatgctgcgaaagcgctatattgtttacttga
ctctcaagcaaaaaaatgcgccgcaaaacttctaaagggattcatgaaaa
aataacctggcgctttttaataacagtcaggcacatccttgCAATTGCAC
GGGGCgtgcatttgcaacgggttTTCCATACCCAGTGCAAATGCGATAGG
ATGCCTCGggcaaaacatgctaatttgaccTTTAAATTAAAAACGGCAAA
AGAGGAAAAAAAACGGCAACTTCATTTCTTCTGTAAAATAATCTTCAAAT
ATGTAAGAAAAAAATGACCCATTgaaaaaaaatttcatctatccagtttt
ctttaattttagatttaatttCATTTAGTTAAAGCGTTCGCTCTCAGATC
GCGCGTATATAAAGATGGCCGGGACATGGGCGATAATATTACGGAGGTAC
CCGAGCTCCATCTTTCGTATTTCTCACTATCGACGATGTGAAGTATATTT
CTAGAAAACCCGTACGAAAAAATAAGTGTAGGAAAtatacaaacattttt
ttctagaaGCAATTAAATTTCAACAAAGGAGTTTTAacacaaatttcagc
ctcgttaAATTTAATGATCTACCTCACTTTCTTTATCAGTGAAATAACTG
AGTAACAGGTAATAATGACGATTAAAACAAGAGGAGCCAATGGAAACCTA
GGTTATATGCACACGACCTATGTATTTAGTTCTAGAAAAAGGCCACTGTC
CCAGCATTAACTAAAGAACTAAAAAGATATTGACTAATACTCCAATGTCC
CTAACCCCGTAAAAGACGCGGAATAAGTGAGGGTGGTTAGAAAAAGTCAC
AAAACTTAATACCGTAAATCCTGATGATTTTGGCGACTTCGTGATGACTT
CGGACTACTTTACAGGGCTGTAATTTTTTCATAGATCAAATGAATTACTT
TCATATGTTTTGCAGACacacctgtctcacagccccggtggaactttttc
acAAGCGGGGATAAAAAAACTCTACTGAAATTCCAATTGggatggaaatt
ctattgtgccaagattaaaaaatccagtggggatgctTTCgcagtgcaat
ttttaaatattgaattttgaaaggcAATGAAATTAAAGTAATTTTCTCAG
TGGGACTAAAATTCTAGGATATTTTCCCACCGGtgacaaaattgttgtca
aattttccagtggggttggGATCCCAGCGAGAGGGAGGGAAAAATACCCA
GAAtaatacatccctgtctcatacGAGtggtaatttttaaatttcttgtc
tctctgtctcacaacgaaatgaaaaatacaaattgcacccctgtctcatg
CGAGAGGGTTTTGGCTCTCTACCTATCTGTCTAATAACgattgaaatacg
cattatatATCTGTCACATGCGTGTAGCATCTTTTACTCTCCACCATGTC
Ttacaataccgagtttatgtattggaggatatcgagggcgacggtaaatg
aaatcaatacaaaataaagtcgatagttgatgaacggctctatatcgcct
ttgctcacctaaacagacgacggtatcttggtgtttttaccgtcatcgag
caaagtggacggcgattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccctcgatttatctcgaa
tacataaactcgctaatgacgGGAAGAATAAGGTAGAATGTCGCCATAAT
CACCTTATGTGGATTAGTTTTTGCCTATACTTTTTTCACGAATTGAGAAT
TTTAAAGTGTTTGCGATTTTTTTTGCAAGGACTAAATGTCGGGAAAATGG
CTCAAATTAACCCACCCAAAAGAATACGATTTCAGTCAATGACTAAATGA
TTCTAGAATTTCGTCGGTTTCGCCTGGTTTGTTGAGTGGTGCAAATTCTT
CGTTTAACTAGATATTTCTATTAAGTATACCCGTCACCAGCCGAAACTTA
ACGTTATTACAACGTTGTAACGCCACTCGATTGACGTTCAAAAATGATAG
AAAGGTTTTTGACATGATGTTGTATATCATCTGTTTCATACTTTTATCGG
TTAAGATGTGATTCAGATTATACTGGTAGGAAGGTGGAATGATTTGAAGA
TGTCGCTTTTCTTTCAAGGTATTCGAAATCGATACATCGAGTAATGGTAC
AGCTAATCAAATATCCGAATTGAGAAGTTAACATCACACGCGTTAGATCA
CACAGTATACAGCAAATTATAAAAGTAAATTTATTTCGTGCTTGGAAGTT
TTTACTTGGTTTTATGCCTTTTATCGTCGTTCTTTATAccgttttttcaa
aactaagAAAGATATTATTGGCGTAGCATATGTCTTCTTCCTAGCCATTA
AATAAGGTTACATCTTGTCCATTTCCAGCTTTTTGACAATAATATTTGTG
TTTTAGGTAATATTGATGATTCGTGGGAAATAAATGGCATAATGGAGAAT
TCCGTTAGAGGGAACAAAAGTTTACAGGTAAGTCTTAGACAAGATTGAAA
CCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004864-exon-sc0000049-1491911889:464738..464877 | TCONS_00004864-exon-sc0000049-1491911889:464738..464877 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1510915933:464738..464877 | TCONS_00004864-exon-sc0000049-1510915933:464738..464877 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1575043694:464738..464877 | TCONS_00004864-exon-sc0000049-1575043694:464738..464877 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1491911889:467406..467511 | TCONS_00004864-exon-sc0000049-1491911889:467406..467511 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1510915933:467406..467511 | TCONS_00004864-exon-sc0000049-1510915933:467406..467511 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1575043694:467406..467511 | TCONS_00004864-exon-sc0000049-1575043694:467406..467511 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1491911889:467694..467792 | TCONS_00004864-exon-sc0000049-1491911889:467694..467792 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1510915933:467694..467792 | TCONS_00004864-exon-sc0000049-1510915933:467694..467792 | Clytia hemisphaerica | exon |
| TCONS_00004864-exon-sc0000049-1575043694:467694..467792 | TCONS_00004864-exon-sc0000049-1575043694:467694..467792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:464738..467792 + |
Blast
The following BLAST results are available for this feature:
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