TCONS_00004862 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004862
Unique Name	TCONS_00004862
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1600

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000049:316029..322006+

transcript sequence

>TCONS_00004862 ID=TCONS_00004862|Name=TCONS_00004862|organism=Clytia hemisphaerica|type=transcript|length=1600bp
tttagataaaaaatataagaatcAATCGAAACCAAGTGCCTACAAGATTT
CTTTAACATGGGTCCTAAGAAAGGAAAAGGTGGCAAAGGCAAATTATCAA
AagcagaaaaagaaagaatcaagAAAGAAGAAGCTGAACAGAGAGCCAGA
GAAGAAGAGGAGGCTCGAATCCAAGCAGAACTTGAAGAAAGAGAGAGAGA
AGAGAGAGAACAAAGAGAACGTGAAGAAAGAAGAATATTTGAAGAACAGG
AGCGTGCAAGACATCAAGCAGAAATAGATGAATTGAACGAGCAGTTAGCA
AAGAATAGCAATTTTTTGAACGTCCTTCATCAAAAGgagattgaaaagaa
gaagTGGGATCGCTACATGCTTTGCGATGGAAGACCTGATCCATCTAGTA
AAAAAGATGTCAACACTTTCATTAATCTTACCAAAGAAGATCACACCAAT
ATTGATATGAAGGAAACATTAGCCAATTGTGAAATGATATTAGAGctGCT
TGAAGAACTGAAAGACCACCTCAACGAAGCAAAGTTGGctttgaaaaatg
atgaaaacgaagaaaatattttgaataatgaaaaattgattgattcttat
aaagagTCGACAATGGATCTTCAAAACCTGATTTTCGCCAAACTTGATGA
GTCAGCATTTGATATCCTTCACACACCTGAGCATGCTATTGATCCTGATA
CTTTAAATATCTCTCAAGTTGAAGAAAGTCCTCGATTCAAAATGTGCTTG
TGGGGCAATGCCTCAAGAAATCCAAGAGTGAAGCAAGTGGAGTTTCCCAA
CGATGGGTTCACCATGGAACTTCCGAAACAGATGGTCTTAACTAACATTG
CAACACGTTCACTATACATACGATATGATTTTCTATCATCCAGATGTAGT
ACATACGCCTACAAACCCCCCAAACCGATTGCGATTCCTGATATTGTTGA
ggttagattccacttttttgttttgtattgTATTGATATTTTGNACCCAA
ACCGATTGTGATTCCTGATATTGTTGAGGAAGTCGACGAGACAAGTGAAA
AGGCTAATGATGGTGAGGAGAGGGCCACGCCCTTTGTGACGCCCCTAACA
ACGCCTCAACTTCAACTACCTTCCAAATCCGCTCTTGCTATCAATGACAA
GAAAAGCAATAACAAATCTGCTTCCAAGAATAATCTCAAAGGTTCGACAT
ACACACTTAGTCCGAATAAAGGCTCAAAACATCCTTCCAGTAGTCGTTTG
TCAGCGAAAGCCAGTAAAAAGAAAGCGAGCACTGCAGCTCTCTCAACAGT
GGAAATACAACCAGAACCACCAACAGATCAGCAAGAAGaagagaaagaga
aagtGATTCGAATCGATGACGAAGATTATGTTGAAGAAGATGTCATTGAT
CTGCGTTCCTTCTCACCCATCGGTCCACTCATCATGGTTGAATTGCTGGA
ATTACCACACCAAGCCAAAGAAATGAACGGATGGACCATACAACAAGTTT
CAAACAACAGTCTTCAGCGTATTCCATATGGAGTGAAAACACAACAACCC
AGTGTTTCTTCAATAAACCAATCAACAGTCAGTATTCATTCAAGAAAATC

Run BLAST on NCBI

transcript from alignment at sc0000049:316029..322006+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004862 ID=TCONS_00004862|Name=TCONS_00004862|organism=Clytia hemisphaerica|type=transcript|length=5978bp|location=Sequence derived from alignment at sc0000049:316029..322006+ (Clytia hemisphaerica)
tttagataaaaaatataagaatcAATCGAAACCAAGTGCCTACAAGATTT
CTTTAACATGGTAAGAATCTAAGATTCCCTATATTTCCCAATGCAATGAA
ATGGTCCAATGGCTGTTGTTTCCCCACTGATGAACTACGGAGAATGTAAT
AATGACCTCTTTTGGtttgtttaaagtttgtttccTTTATTTCACATTAG
GGTCCTAAGAAAGGAAAAGGTGGCAAAGGCAAATTATCAAAagcagaaaa
agaaagaatcaagAAAGAAGAAGCTGAACAGAGAGCCAGAGAAGAAGGTT
TGgaatctttttaaatttgttcaaTAGAACTATGCTGCTCTAAAGCACAC
AGGTCTGTAACATGTGCATTCACCACAGTTTAATGCAGGCCAAATAGAta
caaatttgatcaaatttgtgGTACATTTTTAAGATATTCAGAGAACAAAT
CGGGGCCCCACATCAGCATTACAAGGCAAGTAGAGAACTGAAGAAGTTTC
TCTTTTTAGAACGCTACGAGTCTCTATTTTTGGAATAATCTGTATCAAGA
AGTGTACTTTCTTTTATATGAGAAaacttatttgatttgagactaGGTTA
TTCCTAATTTCAATGGGAAAAATTATAGATAgcaaattttttaagaaatt
ttttaaggaattattttttatattaaataaaatagattttttttcgtttt
ctcgCCAGTTATAATAAAACAACATTATTTTTCAGAGGAGGCTCGAATCC
AAGCAGAACTTGAAGAAAGAGAGAGAGAAGAGAGAGAACAAAGAGAACGT
GAAGAAAGAAGAATATTTGAAGAACAGGTGAGTAAAATCTTAAAAGATTC
CATTAACAGAATGATTTTATCCTATGTAACTTGGCTTATTTTAAGATCAA
AGTGATTATCAAGGTCATAAaggtgtctgaaaaaaattattatattcaAT
CAGAATGCCACTCTTGAtatttacaattttaaaaacttcaaaatgttaca
atggaagttacaaaatttcaaggtgTGCTATTTAGTCAACAAACAATCAC
TGCAAAACAAAATGTTACAATGGAAGGTCCGAAATTTCAAGGTGTACTAT
TCAGTCACAACACTGCACTGTCACCTTTTTATTTCTAACATTAACCAAAA
GCCCTTTACTTCCCTGTTTCTAGGAGCGTGCAAGACATCAAGCAGAAATA
GATGAATTGAACGAGCAGTTAGCAAAGAATAGCAATTTTTTGAACGTCCT
TCATCAAAAGgagattgaaaagaagaaggttTATGTTGTTTTCGATCata
attttattctattttaaaaGCCATTGAAACTTGTCAAGTTGACATTTGAG
ATCGCTATGAAATATTGATATCTTTTTATCTATTCAGTGAGAAAAGTCTA
GGGTAAAGTTTAGGGTAAGAGATCCCATCCCATTCCAGATTCcataattc
ttttttcagtAATATTTTTTAACCATGAAGTAGTGTGTTGCAATTGTTCT
ATCTGTTTATGAAATTTGCCAAGTTGAACTTTCTAGAATAGATTTTCATC
CCTGTAACAAgcatcgaaatttggtcaaattttagtATAAGTTTAAGGAT
TCTTGCGATATTGATGAAGCTGAAACTTTATAGTCATATTTATCATATAT
TTCTGTTGTCTTGTAGTGGGATCGCTACATGCTTTGCGATGGAAGACCTG
ATCCATCTAGTAAAAAAGATGTCAACACTTTCATTAATCTTACCAAAGAA
GATCACACCAATATTGATATGAAGGAAACATTAGCCAATTGTGAAATGAT
ATTAGAGGTTTGATTATTTCACCCGGTTTGTtgttgtcatttttattacG
ATCGTAGAGTATTTTACTTtgataagaacttttttaatttaaagCACTGG
ACAAAAAGGCGTAATTCTAATATATCTTcacaaaacttttcatttcgtat
tataaagattttttgactACAGTTACTCTGTACTTTTAGAATACACCTCA
GATTTCTgatgacaatttttttatttgaaaatatacgTGGAATTACCTTT
TGCAGTATAATAAGAATTAGCATCTACAACGCAAAGTTTTCCATTCTTTC
AACAAACcttaagttaattttttttgttttcagctGCTTGAAGAACTGAA
AGACCACCTCAACGAAGCAAAGTTGGctttgaaaaatgatgaaaacgaag
aaaatattttgaataatgaaaaattgattgattcttataaagaggTATTT
CTGGTTATTTTCTTTAATCACTGTATCGAAACTCTAGAATATTTCAAACT
ATTTAAAGGGTTGTAAGTAGCTGATACAacaaaatagttttataccCAAC
AAGCTGgcttttatttacatttttctaaatCAGGTTTCTTTgcaataaca
aaaaataaattaaaaaatctccGCCATAAAAGCAGAATGTTGATGCGAAC
TAAAATGCTGGCCATCCCACCATATTAGCAACCTCTCAAGTTATTTTTTA
AGTGTTTACTGATGAATTGACGAATTGTCATTCTAGTCGACAATGGATCT
TCAAAACCTGATTTTCGCCAAACTTGATGAGTCAGCATTTGATATCCTTC
ACACACCTGAGCATGCTATTGATCCTGATACTTTAAATATCTCTCAAGTT
GAAGAAAGTCCTCGATTCAAAATGTGCTTGTGGGGCAATGCCTCAAGAAA
TCCAAGGTAATTTTTGGAATTGTCTTTAATTGTTGATGGTGTCATAATTT
TATCATTTGTCACCCTAACAATTCATAAAATAATAACTGTTGTGACAGaa
tcgaaattttgaaattaaaggcACTGGATTTGGCTAACAATATACAgaat
taatttgaattttacGTATGAAGCAAAATGAACGCCCCTGCAGCTTCTGG
TAGCTATGACACGTTATTGAAAAATCGATTTCTTTTCCTAAATAGTTAAA
tatttatcaatcaaacttgaAAATCTTGATCTAAGCCATGATAAAACTTC
CAATAATTTCTATTCCCTTTCTTTTGTTTGCAGAGTGAAGCAAGTGGAGT
TTCCCAACGATGGGTTCACCATGGAACTTCCGAAACAGATGGTCTTAACT
AACATTGCAACACGTTCACTATACATACGATATGATTTTCTATCATCCAG
ATGTAGTACATACGCCTACAAACCCCCCAAACCGATTGCGATTCCTGATA
TTGTTGAggttagattccacttttttgttttgtattgTATTGATATTTTG
NACCCAAACCGATTGTGATTCCTGATATTGTTGAGGTTAGATTCCACTTT
AGGCTATTTTGTGTGTATCGACCGTGTAGCACAGTTGTAGAGTATCCAGC
TACGCTGCTCAACCCCCTagtcgggtcataccaaaggttcccaaaatggt
acttgatgcatctctgcttgatgctcagcaattaagagaaggatcaaggg
taagtggagcaattcagggagaaagaatggcaccctcccctaccttcggg
tagatagctatcgaaagaggagccttcgggtcgccttaCTTACTTGTGTG
TATCTGTGTGTATTGATTCGTTTCTATACCTTGACAAATAAGCGTTGTGT
GTGTATTTGTGCTGAGTGATAatgaccaaatttcgaaaattcatGCGCTT
AACAGAAACACCCCCTTTGTTCATTTAGTTAAAATTCTTCGATTTTTCTA
AGGTTTATTTTCAGCTGACGAAAAAGTCCTTTATTTCTCTCTTTATTATC
TGATATTAATCAAATTTTACCTGATTTAGGATTTTCATTCCTGGAAATTA
GGACCCTCCCcctttatttcattttatattctTCATGAACAATGGTCTAT
CCGGTCATCCTGGGTTCACGGGTCTGTCTGAGAGGTTAGGGAGTAGTTTT
TCACCGTAAGAAACTCAAAATTCCATTCGTTTCATCTTCCTTTTCAGGAA
GTCGACGAGACAAGTGAAAAGGCTAATGATGGTGAGGAGAGGGCCACGCC
CTTTGTGACGCCCCTAACAACGCCTCAACTTCAACTACCTTCCAAATCCG
CTCTTGCTATCAATGACAAGAAAAGCAATAACAAATCTGCTTCCAAGAAT
AATCTCAAAGGTATGTTCTCCTTGTTAATGAGAACATTTTATAAATTGAG
GCCCACAATACTTCTGGGTGTTGAAAGGCGAAGATTTGAGTAAATTCAAG
CCTTTCAAGACGAGTCGACCAATAAGATTTGAATTTTTCCAATTGTTGTT
TGGCTCATAACAGGCTTTAGTGTGTTTAAATGTCGACCCCGTTCAAAGGT
CAGATTCTACAAGTATTttaattcaaacttttcaagAATAATAGACACAT
TGCGCGGATATAAAAAGGCAAGTTCACTAACACAATATCAAATCAACAAC
ACATAAATGAACACTAGTTTTTCTTGAAGAAGGCTTCGGCTGGTTTAGAA
CAAAAggctttcaaaaacaaaatttaagtcgATGACACTTGTGATACTAC
TAAAAATACTAGTCTAAAACGAAATGTTGATTCTCAATTTCAGGTTCGAC
ATACACACTTAGTCCGAATAAAGGCTCAAAACATCCTTCCAGTAGTCGTT
TGTCAGCGAAAGCCAGTAAAAAGAAAGCGAGCACTGCAGCTCTCTCAACA
GTGGAAATACAACCAGAACCACCAACAGATCAGCAAGAAGGTATTTCTTA
TCACCTACTGCAAAATTGAACGAATAATACCCGGAAATTTTATTCGGAAA
GCTACATTTCAACTCAATCCGCTCAGGAAAAGACACTAAAATTTACGAAT
CCTCTCTGGAACTTTTAGCGTTAaatacttaacaataaaagcTAACTCCC
GCATCAATTACAATTATTTCTAGCATCTTCAATATCTGGCTCCCCGGATA
TTGAGATTTTCGTCATGTCATTCTGGAAACAAGGGTTTATTTTTAGGTTC
CATGGCACTCTTATAGACTACCAACCATTAAGCAGCGGTGATTTTCCATT
TTCATTGGCTAAAAGATTCGGGTCACTGTTGAAACAGAGGTGTATTTCAC
TATTTTTGAGTTATATGTCGCCCTTATAAACGCCCTTCAAACAATCATCA
ACTAATTCTCCCTATGTTTTCTAGTTTGATTTCCAACTAAACTTTTTCGT
AAGATTTCTAAattgtttccaaatattttcgAACATagaagagaaagaga
aagtGATTCGAATCGATGACGAAGATTATGTTGAAGAAGATGTCATTGAT
CTGCGTTCCTTCTCACCCATCGGTCCACTCATCATGGTTGAATTGCTGGA
ATTACCACACCAAGCCAAAGAAATGAACGGATGGACCATACAACAAGGTT
TGCTACAATACCTTTTGATAGTGGAGTCTCTATACTTCGAACGTGCACGG
GGAAACTAAAATAAATTCGAGTTTCAAAGGTTTTTATTACATAAAggatt
tgttcgaattaaggagacctttgagttatagaggttctaGTTAAAGAGAA
TCTTCAAATATATTTAGATTACTCATTTGGTCGATGCTTCTTTTTTACCA
GTTCTTGAAAATTAGCATAGACTACCTtagtactctcgggtgcctaatag
ccgggggacggcgctaattaatttttcgaaaattttccacccaggacatt
cgtattccaaccccctgcttattgagttttgagattttttccaacccccc
ctgcttattccaaaccccccggctattaggtacccgaagGTAGCAGCTTT
AGCTATAATTGGACTTCATTATTTGAGACAAATCATAATTTCAGTAGAGA
GGACTTCACCAGCATAATAAATAAATCTGGTTCAAATCTAACGATATCag
cttcaaaaaattattttcctttcaGTTTCAAACAACAGTCTTCAGCGTAT
TCCATATGGAGTGAAAACACAACAACCCAGTGTTTCTTCAATAAACCAAT
CAACAGTCAGTATTCATTCAAGAAAATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002754	XLOC_002754	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000049	supercontig	sc0000049:316029..322006 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.17882	5.17053	4.71265	4.67995	21.5833	19.7319	14.5774	18.2815	14.403	14.7318	9.34229	10.3026	1.10314	1.60448	1.20984	1.76936	2.90831	2.23015	2.32058	2.02009	2.93054	1.71227	4.59991	4.10006	21.207	17.662	2.69369	1.98151	2.521	3.01574

Blast

[Close]

BLAST of TCONS_00004862 vs. Swiss-Prot (Human)
Match: CASC1 (Protein CASC1 OS=Homo sapiens GN=CASC1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.068e-18
Identity = 56/180 (31.11%), Postives = 91/180 (50.56%), Query Frame = 1

Query:  352 KWDRYMLCDGRPDPSSKKDVNTFINLTKEDHTNIDMKETLANCEMILELLEELKDHLNEAKLALXXXXXXXXXXXXXXXXXSYKESTMDLQNLIFAKLDESAFDILHTPEHAIDPDTLNISQVEESPRFKMCLWGNASRNPRVKQVEFPNDGFTMELPKQMVLTNIATRSLYIRYDFLSS 891
            +W  Y+ CDG PDPS  +++NTFI+L KE  TN   +E +   +++L L+E+LK  L E                 +K I  Y+ES + LQ L+  K   +   +L       D D+ N+ +V +     + +W N  +NPR + V F       E+P+ +  ++IA R L+  YD +S+
Sbjct:   94 QWKHYIQCDGSPDPSVAQEMNTFISLWKEK-TNETFEEVIEKSKVVLNLIEKLKFILLETPPC----------DLQDKNIIQYQESILQLQELLHLKFGVATEILLKQASTLADLDSGNMEKVIKDENVTLYVWANLKKNPRHRSVRFSETQIGFEIPRILATSDIAVRLLHTHYDHVSA 262

The following BLAST results are available for this feature:

BLAST of TCONS_00004862 vs. Swiss-Prot (Human)

BLAST of TCONS_00004862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CASC1	4.068e-18	31.11	Protein CASC1 OS=Homo sapiens GN=CASC1 PE=2 SV=2	[more]

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TCONS_00004862 (transcript) - C. hemisphaerica