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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004856 ID=TCONS_00004856|Name=TCONS_00004856|organism=Clytia hemisphaerica|type=transcript|length=784bp
ccagtatgtttttattctgagcataaactttcgcgaatcgttggataaaa
atgaggattttcgaataaaaatttccttaaaagtgaaaaataatccTTAA
ATATGACTAGGACGGTTGCTCTTTGACTTCAAGAAGACATTAGAGGATAA
GAATATGCTGAAAATTGGATATTTATTACAATTTCGagAATCCTTGCATG
CACACGTTAAAGAAGCAACAAATTCTTCTACTATGCAGGAAATATCGACG
GTGACAGCTATAAAAGCATTTGATGGAAGAGAACTCTATGTTTCACAGTA
AGCATGGTTTTCAGTATGGTGAAACAACACATTGGATAAAGGCCGAATTT
CACAGTCGAGTTTTCATTGACTACGTTGTGTTTGTTAATCGTATGGATAT
TCCCTGGCATACTCGAAATTCTCACATTGACCTCAAGACTATTCTTTCCA
TCAACGGTGAGACCATCATGAGTTTGTTTGGGAACACTGGTGAATTTGAA
ATCGAACGTCGAATGTTTATATGTATGCTTCAAGCAGATGGGATCTATGC
TGTACAGCCACAAGCCGTTTCAAGAGATGCCATTAATATCATGGAGATTT
GGGTCTATGGTGCTATTTTGTAAATTCGTTGACACATGTGATGGAATTAT
CTGAAAACATCTCGGGAAGATTACAGATCTTGGGCCCTTCCGAAGTTCTA
TTATTCCGCTCCAAATTCTGTTATTTAAAATCATTACATTTGAAATTGGG
TAAATTGAAAATAGCAAATTAACTTCAATGTTCC Run BLAST on NCBI transcript from alignment at sc0000049:247304..248705+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004856 ID=TCONS_00004856|Name=TCONS_00004856|organism=Clytia hemisphaerica|type=transcript|length=1402bp|location=Sequence derived from alignment at sc0000049:247304..248705+ (Clytia hemisphaerica)
ccagtatgtttttattctgagcataaactttcgcgaatcgttggataaaa
atgaggattttcgaataaaaatttccttaaaagtgaaaaataatccTTAA
ATATGACTAGGACGGTTGCTCTTTGACTTCAAGAAGACATTAGAGGATAA
GAATATGCTGAAAATTGGATATTTATTACAATTTCGaggttttttagatt
ttcaatatttttaagaatttttgcgcgagcataaactttcgcgaatcgcc
ctgttaagaattttcaatgacatttactttcgcgaaaaaggccaaaagtc
gcgaaaatcgcgagcgaaagtttgtacgcctaaagtatattCCACAATTT
GAACTTTACTGTAAACCTTGACTCTGGGGAATCTAGGATTCTTCAAACCT
AATCCCATTGGGTTTTGGACACTCTTAAGGGATAAAGAGTGAATAGTATA
GTCATCATTGCAGTAATGTATCTTTCTTTTAGAATCCTTGCATGCACACG
TTAAAGAAGCAACAAATTCTTCTACTATGCAGGAAATATCGACGGTGACA
GCTATAAAAGCATTTGATGGAAGAGAACTCTATGTTTCACAGTAAGCATG
GTTTTCAGTATGGTGAAACAACACATTGGATAAAGGTTAGTAGTCCTAGC
CTGTTTACCTTCTTTTTAGCTCTATACTAACTGCTTCTGACGCATTCGAG
TTATTTCTATTTTGagcgaatttttttattttgacttctGCAATTATTTA
CTTTATGCTCTGATACAAAGGCCTTGTACGCTGAAAAGAAATGTCTTAAA
TATTGAAACGCAAGATGACTTGTTCTCGTCCTAGCTGAGATTATTCCAAA
TAGTGAAAAAACCATTCTCTGTGTGTCTTTCTAAGACATGTCTTGTACAG
GTAATCTTTCCTGTAGTCTCTCTTTATACATTTCATTATTATTTTACACA
CCACAAAAGGCCGAATTTCACAGTCGAGTTTTCATTGACTACGTTGTGTT
TGTTAATCGTATGGATATTCCCTGGCATACTCGAAATTCTCACATTGACC
TCAAGACTATTCTTTCCATCAACGGTGAGACCATCATGAGTTTGTTTGGG
AACACTGGTGAATTTGAAATCGAACGTCGAATGTTTATATGTATGCTTCA
AGCAGATGGGATCTATGCTGTACAGCCACAAGCCGTTTCAAGAGATGCCA
TTAATATCATGGAGATTTGGGTCTATGGTGCTATTTTGTAAATTCGTTGA
CACATGTGATGGAATTATCTGAAAACATCTCGGGAAGATTACAGATCTTG
GGCCCTTCCGAAGTTCTATTATTCCGCTCCAAATTCTGTTATTTAAAATC
ATTACATTTGAAATTGGGTAAATTGAAAATAGCAAATTAACTTCAATGTT
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004856-exon-sc0000049-1491911889:247304..247491 | TCONS_00004856-exon-sc0000049-1491911889:247304..247491 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1510915933:247304..247491 | TCONS_00004856-exon-sc0000049-1510915933:247304..247491 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1575043694:247304..247491 | TCONS_00004856-exon-sc0000049-1575043694:247304..247491 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1491911889:247786..247938 | TCONS_00004856-exon-sc0000049-1491911889:247786..247938 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1510915933:247786..247938 | TCONS_00004856-exon-sc0000049-1510915933:247786..247938 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1575043694:247786..247938 | TCONS_00004856-exon-sc0000049-1575043694:247786..247938 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1491911889:248263..248705 | TCONS_00004856-exon-sc0000049-1491911889:248263..248705 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1510915933:248263..248705 | TCONS_00004856-exon-sc0000049-1510915933:248263..248705 | Clytia hemisphaerica | exon |
| TCONS_00004856-exon-sc0000049-1575043694:248263..248705 | TCONS_00004856-exon-sc0000049-1575043694:248263..248705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:247304..248705 + |
Blast
The following BLAST results are available for this feature:
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