TCONS_00004853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004853
Unique NameTCONS_00004853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004853 ID=TCONS_00004853|Name=TCONS_00004853|organism=Clytia hemisphaerica|type=transcript|length=1421bp
ATGAATTCTGTTTTTTTATGGTGACATTTGATGACGATGAGTTCAGTAAA
ATATCGCGTCATCTAGTCTACCAGGATGGTGGCCTTCAGGGTACCCAAAA
CAAGAAATACAAAAGGaaaagattttcataaaaaataatattttacatCT
TCCTATAATACACCTGGAATATATGTTTTACAGTTCTACAACAAACTAGA
AAATGGAAAACTAAACCATAATCAAAAACTAAGTATAATGCTGGAATATT
TCTTTGGGAATGGATATAATGTAAATTGTTCCTATACTTGATATAATACG
GATGTGATATTAAATGAAATTGACTTGGATCACAATAACGTTTTTTTAAG
TCTAACTATCACCGAACTTTATGGAGTAAGTTAAGCCAGCCCGTTAAGTT
CAGTTAGACTTTATACCATCTGTTATGTGATGTAAAAATcctaatctttt
taaaaataaattcttttttaaaattttattttttcaaaacgaactgtaaa
aaaaaacagtagCGTAAAAGTATAATCTGTAAAAAATACACTGGCAAAAA
ATATGTATATGAGAAGATCAAATCCTATTATTTTATCATAACAatgattc
aaaaatatttactcTATAAGAGAAACTCTAAATGCTTATTCTAAACATTT
TGACACTACAATTACAAAGGAAATTTCACCTTGCGCAGCAAAATTGAAAT
TCCAAACTTTGTAGTACACTGAAATTAAAGAACAGAGACTTAGGATGAAA
AGTAATATACAAATGGAAAGAAAGCACtgtacaaaaacaaaataaaacgc
aTAAACATAAATCCACAACATACTTAGCTCCATTCATAAGTTGCCTAAAA
TTGTAGGAATTGGACGATCAAATATTTGCAGACTTAAAAAGGGCTTGAGA
ATGATGATTTAGTGCGCAACTTTAGCTAAAGTCGTTGTggtgtgaaaaat
gaaaatgtttttcctttttagaAACCTTGGTCAGTAATATATATGTAGAA
CATAAATAAAGACAATTAACTAAATCTATCAAACACGAAAAAATGAACaa
tagaaaacaaaataaaaaggtaAAGGAACAAATTACTCGGTTAATTGAGC
TATACCTTGGATTGTCTCTGAAAAtacagtaaaaataaaaataaattttt
ttcaaactgtacCTAAAGAGAAATGTAGTAAAATTCTGAAGAAATCTTTA
ACTTGaagttggttttcaacttttaaaaaatctacTAACACCTTTAAAAT
CtatatacaaaaatataatGGAAAAACCTTTTAATTTTCTATCTCCTTGT
TCCAGTGTTCAACCTTGGGCGGGGCAACTCCCCAAACATACTAGTGGAAT
CCTGCATGCTCTTTGCCAATGCTTTTATGGAATCTGCAATATGGTTGGGC
GATGGAGAGTATACCTgggaa
Run BLAST on NCBI

transcript from alignment at sc0000049:217965..219459+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004853 ID=TCONS_00004853|Name=TCONS_00004853|organism=Clytia hemisphaerica|type=transcript|length=1495bp|location=Sequence derived from alignment at sc0000049:217965..219459+ (Clytia hemisphaerica)
ATGAATTCTGTTTTTTTATGGTGACATTTGATGACGATGAGTTCAGTAAA
ATATCGCGTCATCTAGTCTACCAGGATGGTGGCCTTCAGGGTACCCAAAA
CAAGAAATACAAAAGGaaaagattttcataaaaaataatattttacatCT
TCCTATAATACACCTGGAATATATGTTTTACAGTTCTACAACAAACTAGA
AAATGGAAAACTAAACCATAATCAAAAACTAAGTATAATGCTGGAATATT
TCTTTGGGAATGGATATAATGTAAATTGTTCCTATACTTGATATAATACG
GATGTGATATTAAATGAAATTGACTTGGATCACAATAACGTTTTTTTAAG
TCTAACTATCACCGAACTTTATGGAGTAAGTTAAGCCAGCCCGTTAAGTT
CAGTTAGACTTTATACCATCTGTTATGTGATGTAAAAATcctaatctttt
taaaaataaattcttttttaaaattttattttttcaaaacgaactgtaaa
aaaaaacagtagCGTAAAAGTATAATCTGTAAAAAATACACTGGCAAAAA
ATATGTATATGAGAAGATCAAATCCTATTATTTTATCATAACAatgattc
aaaaatatttactcTATAAGAGAAACTCTAAATGCTTATTCTAAACATTT
TGACACTACAATTACAAAGGAAATTTCACCTTGCGCAGCAAAATTGAAAT
TCCAAACTTTGTAGTACACTGAAATTAAAGAACAGAGACTTAGGATGAAA
AGTAATATACAAATGGAAAGAAAGCACtgtacaaaaacaaaataaaacgc
aTAAACATAAATCCACAACATACTTAGCTCCATTCATAAGTTGCCTAAAA
TTGTAGGAATTGGACGATCAAATATTTGCAGACTTAAAAAGGGCTTGAGA
ATGATGATTTAGTGCGCAACTTTAGCTAAAGTCGTTGTggtgtgaaaaat
gaaaatgtttttcctttttagaAACCTTGGTCAGTAATATATATGTAGAA
CATAAATAAAGACAATTAACTAAATCTATCAAACACGAAAAAATGAACaa
tagaaaacaaaataaaaaggtaAAGGAACAAATTACTCGGTTAATTGAGC
TATACCTTGGATTGTCTCTGAAAAtacagtaaaaataaaaataaattttt
ttcaaactgtacCTAAAGAGAAATGTAGTAAAATTCTGAAGAAATCTTTA
ACTTGaagttggttttcaacttttaaaaaatctacTAACACCTTTAAAAT
CtatatacaaaaatataatGGAAAAACCTTTTAATTTTCTATCTCCTTGT
TCCAGTGTTCAACCTTGGGCGGGGCAACTCCCCAAACATACNTGGAAAAA
CCTTTTAATTTTCTATCTCCTTGTTCCAGTGTTCAACCTTGGGCGTGGCA
ACTCCCCAAACATACTAGTGGAATCCTGCATGCTCTTTGCCAATGCTTTT
ATGGAATCTGCAATATGGTTGGGCGATGGAGAGTATACCTgggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002749XLOC_002749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004853-exon-sc0000049-1491911889:217965..219301TCONS_00004853-exon-sc0000049-1491911889:217965..219301Clytia hemisphaericaexon
TCONS_00004853-exon-sc0000049-1510915933:217965..219301TCONS_00004853-exon-sc0000049-1510915933:217965..219301Clytia hemisphaericaexon
TCONS_00004853-exon-sc0000049-1575043694:217965..219301TCONS_00004853-exon-sc0000049-1575043694:217965..219301Clytia hemisphaericaexon
TCONS_00004853-exon-sc0000049-1491911889:219376..219459TCONS_00004853-exon-sc0000049-1491911889:219376..219459Clytia hemisphaericaexon
TCONS_00004853-exon-sc0000049-1510915933:219376..219459TCONS_00004853-exon-sc0000049-1510915933:219376..219459Clytia hemisphaericaexon
TCONS_00004853-exon-sc0000049-1575043694:219376..219459TCONS_00004853-exon-sc0000049-1575043694:219376..219459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:217965..219459 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22146	0.155573	0.253827	0.0858889	0	0	0	0	0.370446	0.132489	0.447083	0.398577	0.489809	0.118262	0.337265	0.401658	0.203033	0.279654	0.501165	0.369189	0.326331	0.218043	0.148723	0.137736	0	0	0.143616	0.251745	0.104336	0.0528966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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