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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004845 ID=TCONS_00004845|Name=TCONS_00004845|organism=Clytia hemisphaerica|type=transcript|length=3286bpRun BLAST on NCBI protein sequence of TCONS_00004845-protein >TCONS_00004845-protein ID=TCONS_00004845-protein|Name=TCONS_00004845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp MSVMVRAQENFDVGVYLQKQHITMRSTTNCTINLNDEDLKPTASIHVIVDRun BLAST on NCBI transcript from alignment at sc0000049:88086..101742+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004845 ID=TCONS_00004845|Name=TCONS_00004845|organism=Clytia hemisphaerica|type=transcript|length=13657bp|location=Sequence derived from alignment at sc0000049:88086..101742+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:88086..101742+ >TCONS_00004845 ID=TCONS_00004845|Name=TCONS_00004845|organism=Clytia hemisphaerica|type=CDS|length=10404bp|location=Sequence derived from alignment at sc0000049:88086..101742+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004845 vs. Swiss-Prot (Human)
Match: ZN570 (Zinc finger protein 570 OS=Homo sapiens GN=ZNF570 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.263e-32 Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 3
Query: 543 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHKGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKRFGQRGHLQYHMRKHEGK 977
G +P ++C +C + F +HL +H HT E+P++C +C+K F Q +L +H +HTG KP++C EC K F +R + H +H G K +EC VC K F+LR+ L VH R HTGE+PY+C+ C K F Q HL H R H G+
Sbjct: 270 GEKP--YECKECRKAFSQNAHLVQHLRVHTGEKPYECKVCRKAFSQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQH-QRVHTGEKPYECNVCGKAFSLRAYLTVHQRIHTGERPYECKECGKAFSQNSHLAQHQRIHTGE 411 HSP 2 Score: 133.265 bits (334), Expect = 2.726e-32 Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 3
Query: 543 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHKGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKRFGQRGHLQYHMRKHEGKTSSTPAGKEHSVI 1016
G RP ++C +C + F SHL +H+ HT E+P++C C+K F Q +L +H +HTG KP++C EC K F + + H +H G K +ECTVC K F+ +L H R HTGE+PY+C+ C K F Q HL +H R H G++ S P H V+
Sbjct: 382 GERP--YECKECGKAFSQNSHLAQHQRIHTGEKPYKCQECRKAFSQIAYLAQHQRVHTGEKPYECIECGKAFSNDSSLTQH-QRVHTGEKPYECTVCGKAFSYCGSLAQHQRIHTGERPYECKECKKTFRQHAHLAHHQRIHIGESLSPPNPVNHQVL 536 HSP 3 Score: 121.324 bits (303), Expect = 1.795e-28 Identity = 60/145 (41.38%), Postives = 87/145 (60.00%), Query Frame = 3
Query: 543 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHKGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKRFGQRGHLQYHMRKHEGK 977
G +P ++C +C + F S+L +H+ HT E+P++C C+K F Q HL +H+ +HTG KP++C C K F S+F +H G K +EC C K F+ RS++ H R HTGEKPY+C +C K F R +L H R H G+
Sbjct: 242 GEKP--YKCIECGKAFSQRSNLVQHQRIHTGEKPYECKECRKAFSQNAHLVQHLRVHTGEKPYECKVCRKAF-SQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQHQRVHTGEKPYECNVCGKAFSLRAYLTVHQRIHTGE 383 HSP 4 Score: 116.316 bits (290), Expect = 8.885e-27 Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 3
Query: 543 GGRPLRFQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHKGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKRFGQRGHLQYHMRKHEGK 977
G +P ++C C + F ++L H+ HT ERP++C C K F Q HL +H IHTG KP++C EC K F + H +H G K +EC C K F+ S+L H R HTGEKPY+C +C K F G L H R H G+
Sbjct: 354 GEKP--YECNVCGKAFSLRAYLTVHQRIHTGERPYECKECGKAFSQNSHLAQHQRIHTGEKPYKCQECRKAFSQIAYLAQH-QRVHTGEKPYECIECGKAFSNDSSLTQHQRVHTGEKPYECTVCGKAFSYCGSLAQHQRIHTGE 495 HSP 5 Score: 111.309 bits (277), Expect = 3.504e-25 Identity = 58/139 (41.73%), Postives = 77/139 (55.40%), Query Frame = 3
Query: 561 FQCPDCDRKFHAPSHLKRHRLCHTSERPFQCHICKKGFLQAWHLGRHMTIHTGNKPFQCPECPKTFGSRFEMKTHCNYIHKGIKEHECTVCNKMFTLRSNLKVHMRKHTGEKPYQCEICLKRFGQRGHLQYHMRKHEGK 977
+C DC++ F S L H+ HT E+P++C C K F Q +L +H IHTG KP++C EC K F + H +H G K +EC VC K F+ + L H R HTGEKPY+C C K F R + H R H G+
Sbjct: 218 LKCNDCEKVFSQSSSLTLHQRIHTGEKPYKCIECGKAFSQRSNLVQHQRIHTGEKPYECKECRKAFSQNAHLVQHLR-VHTGEKPYECKVCRKAFSQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQHQRVHTGE 355 The following BLAST results are available for this feature:
BLAST of TCONS_00004845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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