TCONS_00004837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004837
Unique NameTCONS_00004837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004837 ID=TCONS_00004837|Name=TCONS_00004837|organism=Clytia hemisphaerica|type=transcript|length=672bp
gtttatttttgttaaacTAGAGgagaaaatctggaaaaaacaatttttgc
tgATTAATTTTAATACTTTTACTCAATAGAACAAGCTTAATGATAAATTT
ATGTACAAAGTCTCGGTAATCCAAAAAGTATCATAActcttttattcaaa
atacaCCGCAGCCACCATGACAGTACACGTAAAATCCCCTCCGTTTGTGG
TCACACTCACAAAATTATCCAACTTCTCATCCCACAAATATCGACTTGCA
AATCGAACGCTTTGAGTATTATTCGAAAATATCAAACACTGAGTAACCAA
TTTATATCTGTTATAGCCTAGCTGCTTGATTCTTTGTTTACTCTCATCTG
CAATACGTTTACATAGCTCTCCAGATGTCTTAGCGTTATATTTATAAGAG
TTCAAATTGTTCGATAGTATTGATTCAAGAATTGGTTTGACTTTGGTTGT
TGAAAATACACCATTACTTTTGGGAAGCATTCGATAGGTGTTTGGGCAAG
CCGAGGGTGTTGGATTTTGATGGTTTCGATGTTTGTCAATTTCTGATTCA
GCTCTTTGTCTTGATGTCTCCtttttttttcttgattctCTCTAGAGCAG
CATCTAACAAGTAAATCAAAATGTACCAAAGTTATTTCTTTAAATGTTTT
CGCAGATTCTGATGaataaaat
Run BLAST on NCBI

transcript from alignment at sc0000049:74120..75653+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004837 ID=TCONS_00004837|Name=TCONS_00004837|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at sc0000049:74120..75653+ (Clytia hemisphaerica)
gtttatttttgttaaacTAGAGgagaaaatctggaaaaaacaatttttgc
tgATTAATTTTAATACTTTTACTCAATAGAACAAGCTTAATGATAAATTT
ATGTACAAAGTCTCGGTAATCCAAAAAGTATCATAActcttttattcaaa
atacaCCGCAGCCACCATGACAGTACACGTAAAATCCCCTCCGTTTGTGG
TCACACTCACAAAATTATCCAACTTCTCATCCCACAAATATCGACTTGCA
AATCGAACGCTTTGAGTATTATTCGAAAATATCAAACACTGAGTAACCAA
TTTATATCTGTTATAGCCTAGCTGCTTGATTCTTTGTTTACTCTCATCTG
CAATACGTTTACATAGCTCTCCAGATGTCTTAGCGTTATATTTATAAGAG
TTCAAATTGTTCGATAGTATTGATTCAAGAATTGGTTTGACTTTGGTTGT
TGAAAATACACCATTACTTTTGGGAAGCATTCGATAGGTGTTTGGGCAAG
CCGAGGGTGTTGGATTTTGATGGTTTCGATGTTTGTCAATTTCTGATTCA
GCTCTTTGTCTTGATGTCTCCATCTAAACGAGACAATATAATTCCAATAT
TTCGAGTGTATTTACAACATTTACTCGCTGACCTTTAAATACCCAAGTTT
TACCCATAATGGTAGCACTATTCGGTATGGGTCAATTtataatttcatga
aattttccgtttaaaatttcaaaagaaatgtcCACCCATATTGAGAAGta
ctaccattagggtaccactacGTTTACATAAAACAGGTGAAAATTTAGTG
AGAGTTTTGATTTTCCACCCATATTGAGTAGtactaccattagggtacca
ctacGTTTACAGAAAACAGGTGAAAATTTAGTTAGAGTTTTGATTATCAC
AGTCATTTTAATATTAAAGAGTAAaatgtgaagaaaattttgtaaCTTGT
TCAATCTAGGACAAGATTGATAACTACTACTCGATCAAATAGATTATAAT
CCACTTTCGTCCACTTTTATGTTAAAGTGGCCAAAATTAATACTTTTTTT
CGAGCTGATATTAATTGAAAGATGATATGTATGACAGGATTTGAAAATGT
CAGGAACGAGACACaacttagcctggatatccaggctgtaaacttctttt
tttttccattaACGATGTTTCTGGAACCGCCTGGTCATCCTAAATAGCTT
TGCATTCCAATATTAGAAGGCAAAGCGCATACATACTTGGCCAATTCAAT
TATCGTGCGCAGTTAAAATTTGCCGACCCTGGGTTAAAAATTATCTAGGT
AGACAAAACCTGTAAATTgtagaaacatcaaaataatttccagcttggat
atccaggctagacaCAACTCAAATGGAAATAcgaaattatttcaattttt
caatatttacatCCATCTCTTTcgaattcttactttttttttcttgattc
tCTCTAGAGCAGCATCTAACAAGTAAATCAAAATGTACCAAAGTTATTTC
TTTAAATGTTTTCGCAGATTCTGATGaataaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002744XLOC_002744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004837-exon-sc0000049-1491911889:74120..74690TCONS_00004837-exon-sc0000049-1491911889:74120..74690Clytia hemisphaericaexon
TCONS_00004837-exon-sc0000049-1510915933:74120..74690TCONS_00004837-exon-sc0000049-1510915933:74120..74690Clytia hemisphaericaexon
TCONS_00004837-exon-sc0000049-1575043694:74120..74690TCONS_00004837-exon-sc0000049-1575043694:74120..74690Clytia hemisphaericaexon
TCONS_00004837-exon-sc0000049-1491911889:75553..75653TCONS_00004837-exon-sc0000049-1491911889:75553..75653Clytia hemisphaericaexon
TCONS_00004837-exon-sc0000049-1510915933:75553..75653TCONS_00004837-exon-sc0000049-1510915933:75553..75653Clytia hemisphaericaexon
TCONS_00004837-exon-sc0000049-1575043694:75553..75653TCONS_00004837-exon-sc0000049-1575043694:75553..75653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:74120..75653 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.2968	54.3231	31.5805	30.2176	252.755	176.785	197.916	215.168	170.145	193.316	161.63	213.877	0.407691	0.158772	0.348085	0.233468	1.72568	1.41501	1.38473	0.170473	4.74151	4.3364	59.3918	46.3277	8.06243	8.00319	25.6369	28.1453	21.1771	25.1288
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005334Tctex
Blast
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BLAST of TCONS_00004837 vs. Swiss-Prot (Human)
Match: TC1D3 (Tctex1 domain-containing protein 3 OS=Homo sapiens GN=TCTE3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.499e-17
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = -1 
Query:  145 NTYRMLPKSNGVFSTTKVKPILESILSNNLNSYKYNAKTSGELCKRIADESKQRIKQLGYNRYKLVTQCLIFSNNTQSVRFASRYLWDEKLDNFVSVTTNGGDFTCTVMVAAVYFE 492
            N+YRM P     F    V+  ++ IL+ +L   KY+ K    L   +AD     +K+ GY+RYK + + L      Q++  ASR++WD   D++V+       +   V+V A+Y+E
Sbjct:   85 NSYRMEPLKK--FQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE 198
The following BLAST results are available for this feature:
BLAST of TCONS_00004837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TC1D36.499e-1731.03Tctex1 domain-containing protein 3 OS=Homo sapiens... [more]
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