|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004831 ID=TCONS_00004831|Name=TCONS_00004831|organism=Clytia hemisphaerica|type=transcript|length=1138bp
tgataaaaaatgacgtcatgacgtcataataatGAATGATCGCGTGAGAC
AATAGATTGAATTACTATATAAGAGATTGATTTCTAATCATTTGAATCAG
TACATCACTAAATGCTACACAGAGTAGTTACTcagaagagagagagagaa
agtaAGAGAAGATATTGAATTGAAGACCCTGAAGAAACATAACTTATTGC
AGCATTTTGAACGTCAATttatttggagaaaaaaatgtatatCGCTGAAA
GTATAAACGAAGAAACTTGCCAACAACATTTGAACGTCGCCAAAGCTAGT
CCTCATCATTTATCACCTCGACGTTGCTTGAAACAAGACGCCATGGTATC
ATCCCGACCTCGAGCCCGATCAGAAAGCTTAACGTCAAATCGTCATAAAC
GTAGTTCAAGTGTCGACTTAAAGAAACACGTCAATAACAATACCAAAACG
AACAAACCGACATCCAATACGAATTTATCGCCATTAACGCCGGCATCTTT
GTTATGCTACACAGTCATAAACCGTGACGAAATCTTAttacaaaaacttt
tatcaCAATACCAAAACAAAGTCAACGAACTTTCAGAGGAAGGGTTAACG
CCATTACATTTAGCATCAATGGATGGTAATACTGATATTATGAGGATTTT
ATTTCAGCATGGAGCTTCTTTGGATAAAGTAGATTTTAACAATCGAAGTG
CATTGGAATATGCAGTTCTATCAGGACAATTCGATGCTGCTCAATTCCTT
ATTGAAAATGGTTGCGATACTTCTTTGATACGAGATGGCTATTCTTTCTA
AATTATCTTAAAATCCtttaataattgtttttatttattttttacaagtT
TAGATTTCAGTTAGCTTTATTTTAGAGATTAAATTTTccttctttattat
tttttgactGTTTCAAAGGTCCTTTGTTATATTTTAGtgtaaaaatgaga
attttatatAACTTGCTGGATTTATTAAACAAAAAGTTATGCCTagtttg
tataaataaagaattTAAGGATGGATTGTAAATATTATGTAAATATGAAt
tttgacatttaaaaaaatatatttttattatgatgaatataagaaaaata
cgaaaaagaaaatcattcaAATTACTGCAAGATAAGAC Run BLAST on NCBI protein sequence of TCONS_00004831-protein >TCONS_00004831-protein ID=TCONS_00004831-protein|Name=TCONS_00004831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MYIAESINEETCQQHLNVAKASPHHLSPRRCLKQDAMVSSRPRARSESLT
SNRHKRSSSVDLKKHVNNNTKTNKPTSNTNLSPLTPASLLCYTVINRDEI
LLQKLLSQYQNKVNELSEEGLTPLHLASMDGNTDIMRILFQHGASLDKVD
FNNRSALEYAVLSGQFDAAQFLIENGCDTSLIRDGYSF Run BLAST on NCBI transcript from alignment at sc0000048:690797..691934 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004831 ID=TCONS_00004831|Name=TCONS_00004831|organism=Clytia hemisphaerica|type=transcript|length=1138bp|location=Sequence derived from alignment at sc0000048:690797..691934 (Clytia hemisphaerica)
GTCTTATCTTGCAGTAATTtgaatgattttctttttcgtatttttcttat
attcatcataataaaaatatatttttttaaatgtcaaaaTTCATATTTAC
ATAATATTTACAATCCATCCTTAaattctttatttatacaaactAGGCAT
AACTTTTTGTTTAATAAATCCAGCAAGTTatataaaattctcatttttac
aCTAAAATATAACAAAGGACCTTTGAAACagtcaaaaaataataaagaag
gAAAATTTAATCTCTAAAATAAAGCTAACTGAAATCTAAacttgtaaaaa
ataaataaaaacaattattaaaGGATTTTAAGATAATTTAGAAAGAATAG
CCATCTCGTATCAAAGAAGTATCGCAACCATTTTCAATAAGGAATTGAGC
AGCATCGAATTGTCCTGATAGAACTGCATATTCCAATGCACTTCGATTGT
TAAAATCTACTTTATCCAAAGAAGCTCCATGCTGAAATAAAATCCTCATA
ATATCAGTATTACCATCCATTGATGCTAAATGTAATGGCGTTAACCCTTC
CTCTGAAAGTTCGTTGACTTTGTTTTGGTATTGtgataaaagtttttgta
aTAAGATTTCGTCACGGTTTATGACTGTGTAGCATAACAAAGATGCCGGC
GTTAATGGCGATAAATTCGTATTGGATGTCGGTTTGTTCGTTTTGGTATT
GTTATTGACGTGTTTCTTTAAGTCGACACTTGAACTACGTTTATGACGAT
TTGACGTTAAGCTTTCTGATCGGGCTCGAGGTCGGGATGATACCATGGCG
TCTTGTTTCAAGCAACGTCGAGGTGATAAATGATGAGGACTAGCTTTGGC
GACGTTCAAATGTTGTTGGCAAGTTTCTTCGTTTATACTTTCAGCGatat
acatttttttctccaaataaATTGACGTTCAAAATGCTGCAATAAGTTAT
GTTTCTTCAGGGTCTTCAATTCAATATCTTCTCTtactttctctctctct
cttctgAGTAACTACTCTGTGTAGCATTTAGTGATGTACTGATTCAAATG
ATTAGAAATCAATCTCTTATATAGTAATTCAATCTATTGTCTCACGCGAT
CATTCattattatgacgtcatgacgtcattttttatca Coding sequence (CDS) from alignment at sc0000048:690797..691934 >TCONS_00004831 ID=TCONS_00004831|Name=TCONS_00004831|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000048:690797..691934 (Clytia hemisphaerica)
TTAGAAAGAATAGCCATCTCGTATCAAAGAAGTATCGCAACCATTTTCAA
TAAGGAATTGAGCAGCATCGAATTGTCCTGATAGAACTGCATATTCCAAT
GCACTTCGATTGTTAAAATCTACTTTATCCAAAGAAGCTCCATGCTGAAA
TAAAATCCTCATAATATCAGTATTACCATCCATTGATGCTAAATGTAATG
GCGTTAACCCTTCCTCTGAAAGTTCGTTGACTTTGTTTTGGTATTGtgat
aaaagtttttgtaaTAAGATTTCGTCACGGTTTATGACTGTGTAGCATAA
CAAAGATGCCGGCGTTAATGGCGATAAATTCGTATTGGATGTCGGTTTGT
TCGTTTTGGTATTGTTATTGACGTGTTTCTTTAAGTCGACACTTGAACTA
CGTTTATGACGATTTGACGTTAAGCTTTCTGATCGGGCTCGAGGTCGGGA
TGATACCATGGCGTCTTGTTTCAAGCAACGTCGAGGTGATAAATGATGAG
GACTAGCTTTGGCGACGTTCAAATGTTGTTGGCAAGTTTCTTCGTTTATA
CTTTCAGCGatatacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004831-exon-sc0000048-1491911889:690797..691934 | TCONS_00004831-exon-sc0000048-1491911889:690797..691934 | Clytia hemisphaerica | exon |
| TCONS_00004831-exon-sc0000048-1510915933:690797..691934 | TCONS_00004831-exon-sc0000048-1510915933:690797..691934 | Clytia hemisphaerica | exon |
| TCONS_00004831-exon-sc0000048-1575043694:690797..691934 | TCONS_00004831-exon-sc0000048-1575043694:690797..691934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:690797..691934 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
