TCONS_00004822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004822
Unique NameTCONS_00004822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004822 ID=TCONS_00004822|Name=TCONS_00004822|organism=Clytia hemisphaerica|type=transcript|length=456bp
tgaaattttccagatttcTTTGAATGAAATCGAGACTTTCTGCCATGCGT
GGAATCAAAAGAGATATCCTTACATTATACCAGATAGCACTTGTCAGAGG
TTTGTTGATTGTTTGGCAAAGAAGTTGAATGTGAATTTGGATGAATTTTG
GAACCTAAATAATACTCTTACTGCATTGGCTTTAGGAGCTGGATTACTAT
GGACCTTTATCAGCGGAAGATAATCCCTACGAAAAGAGAAGTTTTCATTC
TTGACATGTCATAGACATTCGCCGTTTTTTGATTTTCGAAACAACAAGAG
CCTTATTAGTAACCcagggtactaggtttgcgagataGCTGTAATATCTG
AACCAAAGTTCAAAAATCGaccccttagagagactgaattttgaaaattt
tgtctaatttttgactttttgctaTCCTTAGAGAAACTTTTTCCACAAAA
TTCcac
Run BLAST on NCBI

transcript from alignment at sc0000048:586239..586694

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004822 ID=TCONS_00004822|Name=TCONS_00004822|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0000048:586239..586694 (Clytia hemisphaerica)
gtgGAATTTTGTGGAAAAAGTTTCTCTAAGGAtagcaaaaagtcaaaaat
tagacaaaattttcaaaattcagtctctctaaggggtCGATTTTTGAACT
TTGGTTCAGATATTACAGCtatctcgcaaacctagtaccctgGGTTACTA
ATAAGGCTCTTGTTGTTTCGAAAATCAAAAAACGGCGAATGTCTATGACA
TGTCAAGAATGAAAACTTCTCTTTTCGTAGGGATTATCTTCCGCTGATAA
AGGTCCATAGTAATCCAGCTCCTAAAGCCAATGCAGTAAGAGTATTATTT
AGGTTCCAAAATTCATCCAAATTCACATTCAACTTCTTTGCCAAACAATC
AACAAACCTCTGACAAGTGCTATCTGGTATAATGTAAGGATATCTCTTTT
GATTCCACGCATGGCAGAAAGTCTCGATTTCATTCAAAgaaatctggaaa
atttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002731XLOC_002731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004822-exon-sc0000048-1491911889:586239..586694TCONS_00004822-exon-sc0000048-1491911889:586239..586694Clytia hemisphaericaexon
TCONS_00004822-exon-sc0000048-1510915933:586239..586694TCONS_00004822-exon-sc0000048-1510915933:586239..586694Clytia hemisphaericaexon
TCONS_00004822-exon-sc0000048-1575043694:586239..586694TCONS_00004822-exon-sc0000048-1575043694:586239..586694Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:586239..586694 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0813152	0	0	0.306128	0	0.345762	0.242076	1.23938	0	0	0.955269	1.24999	0.244681	0.840258	1.06101	0	1.08269	0	1.24987	1.08381	2.14095	2.49543	5.31033	3.803	3.42074	5.71722	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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