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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004819 ID=TCONS_00004819|Name=TCONS_00004819|organism=Clytia hemisphaerica|type=transcript|length=1852bp
gccaattttcaaatttcctaaTATACTTTGAGTACAATCGTGGGCGCTTA
CtgattcataaaaaaatcaagctaaGGACTGGGTACGACTAAAGCCGAAA
AAATACATAACGTCCCAATTAAATAGCATCAGTAGTGtcatttttttccg
gtctgacTTTCCTTTTATTACGGTACCGAATACTTTCGAACAATGTTTTA
CACGCGTTTCTCAATTTCGAATTTAAAAGTACATAATAAACTGGATTGAT
AGTAGCATTGACATAAtgtaaaagtttgaaatatttcaataataaACAAT
GTGATTTATCGGTTCCGTCAAATCTTCCACCAATCACCATAATGTGAATA
TACCAAAATGGCATCCATAAACAAAGGAAAATCACCATGACTATGGTCAG
TAAAATAGCCGCTTTTAGTTCTCTTCTTAAACGACGTATCTGATGTATAA
TTTTCATGACCTCTTCACGGATTAAACGTTTTTGACGGTTTTTATCGATG
TTACGACGAACAATATGTCGGAATTGACGACCAAGTGTCGGTTGACCGGC
AGCATTTGTGAAAGGCAGGGAATCTGATTTCTTTAAAGTGGCTTTTAATT
TTCTATTAGCGTCAGATTTTAAGGAGATTTGTGGTGATGACATTGAGTGT
TTTAAAACTTCTTGTTTCGCAGGTTCTACTTCAGGTTTTTTTGCGTCGCT
CCCTTCCTTATCAGTAGAATTTGATGGGTTTTGCTCTGATAAATTATCGT
TTAATTCTTCATTAATATAGGATAAAATTTTACTCCGTCGTGCTAGAGGT
GGTAATTTTTTGCGtccatttttctctttatttgcTTCATCTTGTCTTTC
CTCATTTACAATTTCTTCAATATTCTTCTGTAAGGTTACATTACTGTAAT
TCAGCGATACACGGAAACGAATACTACTTGAATCAGCTCGACTCAAATTA
CGAACTTGGATGGCTGAATCGCTCTTCGTAGGTTCTGTTTTTTGTCGACT
TGAGTTGGTAGAGACGCTACATTCAGAAGAATAATCAATCTCAATTTccg
aatttattttcaaatgattACTTTTGATTGATacctttttgtcatttttc
ttgGAGTGAAATTTAGCTTTCGATAATTTCCGTAATACCGAATACCGTTC
TTTAATACCTTTACCAGACGTTTTATGGACTTGTAATTTCAAAATCTTCT
TGGCGTGTTGTTTAGCTATGATAGCTACATTTACATGACAGAAAATGATC
AAACTGATTGGCCAACCGTATAACACAAGTATAGTAAACCAAGAGAATGT
TTCCTCTGAAAAAACAATACGTAATACACCCGTACTGATTCCGTACACCC
ATATCGAGGCAACCATAATCAAGCTGAGATTAAGAGTAATCTTCCGTTGA
TAGATATATGGATGAACAATGATGAAATATCGGTCGAACGCTAGAATTGA
TAAACAAGTTATTGAAATCGTGCTTGATATTGTATCAACAACATGGTATG
CTTGTTGCCATGGTTGCGACGCGTTCCATTTCCCGATATATAATCCGATA
AAAAATGGGACAGGTAAAGTAATCACGAATAAATCGGCAACTGTTAAACA
AGCGATGAAAATATCCGTCGGTGTTCGAAAATGTCGGTGTTTCCATAGCA
ACAATAAAACGAAAATGTTTTCGAATAATGCGAATAAAATGACGATAATT
GCGATAACACTATCTATTATTTGTATTGATATATCAAGTTTCTCGTTTAA
CGTCTCTGAACAGAATTGCATCATTTTGAAGTCACCTTTCAACCACTTTC
CGTTATCATTTTCACCAGTTTCACTAtgaatttattcttttttttacttc
aa Run BLAST on NCBI protein sequence of TCONS_00004819-protein >TCONS_00004819-protein ID=TCONS_00004819-protein|Name=TCONS_00004819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp
MMQFCSETLNEKLDISIQIIDSVIAIIVILFALFENIFVLLLLWKHRHFR
TPTDIFIACLTVADLFVITLPVPFFIGLYIGKWNASQPWQQAYHVVDTIS
STISITCLSILAFDRYFIIVHPYIYQRKITLNLSLIMVASIWVYGISTGV
LRIVFSEETFSWFTILVLYGWPISLIIFCHVNVAIIAKQHAKKILKLQVH
KTSGKGIKERYSVLRKLSKAKFHSKKNDKKVSIKSNHLKINSEIEIDYSS
ECSVSTNSSRQKTEPTKSDSAIQVRNLSRADSSSIRFRVSLNYSNVTLQK
NIEEIVNEERQDEANKEKNGRKKLPPLARRSKILSYINEELNDNLSEQNP
SNSTDKEGSDAKKPEVEPAKQEVLKHSMSSPQISLKSDANRKLKATLKKS
DSLPFTNAAGQPTLGRQFRHIVRRNIDKNRQKRLIREEVMKIIHQIRRLR
RELKAAILLTIVMVIFLCLWMPFWYIHIMVIGGRFDGTDKSHCLLLKYFK
LLHYVNATINPVYYVLLNSKLRNACKTLFESIRYRNKRKVRPEKNDTTDA
I Run BLAST on NCBI transcript from alignment at sc0000048:581075..582926 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004819 ID=TCONS_00004819|Name=TCONS_00004819|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at sc0000048:581075..582926 (Clytia hemisphaerica)
ttgaagtaaaaaaaagaataaattcaTAGTGAAACTGGTGAAAATGATAA
CGGAAAGTGGTTGAAAGGTGACTTCAAAATGATGCAATTCTGTTCAGAGA
CGTTAAACGAGAAACTTGATATATCAATACAAATAATAGATAGTGTTATC
GCAATTATCGTCATTTTATTCGCATTATTCGAAAACATTTTCGTTTTATT
GTTGCTATGGAAACACCGACATTTTCGAACACCGACGGATATTTTCATCG
CTTGTTTAACAGTTGCCGATTTATTCGTGATTACTTTACCTGTCCCATTT
TTTATCGGATTATATATCGGGAAATGGAACGCGTCGCAACCATGGCAACA
AGCATACCATGTTGTTGATACAATATCAAGCACGATTTCAATAACTTGTT
TATCAATTCTAGCGTTCGACCGATATTTCATCATTGTTCATCCATATATC
TATCAACGGAAGATTACTCTTAATCTCAGCTTGATTATGGTTGCCTCGAT
ATGGGTGTACGGAATCAGTACGGGTGTATTACGTATTGTTTTTTCAGAGG
AAACATTCTCTTGGTTTACTATACTTGTGTTATACGGTTGGCCAATCAGT
TTGATCATTTTCTGTCATGTAAATGTAGCTATCATAGCTAAACAACACGC
CAAGAAGATTTTGAAATTACAAGTCCATAAAACGTCTGGTAAAGGTATTA
AAGAACGGTATTCGGTATTACGGAAATTATCGAAAGCTAAATTTCACTCc
aagaaaaatgacaaaaaggtATCAATCAAAAGTaatcatttgaaaataaa
ttcggAAATTGAGATTGATTATTCTTCTGAATGTAGCGTCTCTACCAACT
CAAGTCGACAAAAAACAGAACCTACGAAGAGCGATTCAGCCATCCAAGTT
CGTAATTTGAGTCGAGCTGATTCAAGTAGTATTCGTTTCCGTGTATCGCT
GAATTACAGTAATGTAACCTTACAGAAGAATATTGAAGAAATTGTAAATG
AGGAAAGACAAGATGAAgcaaataaagagaaaaatggaCGCAAAAAATTA
CCACCTCTAGCACGACGGAGTAAAATTTTATCCTATATTAATGAAGAATT
AAACGATAATTTATCAGAGCAAAACCCATCAAATTCTACTGATAAGGAAG
GGAGCGACGCAAAAAAACCTGAAGTAGAACCTGCGAAACAAGAAGTTTTA
AAACACTCAATGTCATCACCACAAATCTCCTTAAAATCTGACGCTAATAG
AAAATTAAAAGCCACTTTAAAGAAATCAGATTCCCTGCCTTTCACAAATG
CTGCCGGTCAACCGACACTTGGTCGTCAATTCCGACATATTGTTCGTCGT
AACATCGATAAAAACCGTCAAAAACGTTTAATCCGTGAAGAGGTCATGAA
AATTATACATCAGATACGTCGTTTAAGAAGAGAACTAAAAGCGGCTATTT
TACTGACCATAGTCATGGTGATTTTCCTTTGTTTATGGATGCCATTTTGG
TATATTCACATTATGGTGATTGGTGGAAGATTTGACGGAACCGATAAATC
ACATTGTttattattgaaatatttcaaacttttacaTTATGTCAATGCTA
CTATCAATCCAGTTTATTATGTACTTTTAAATTCGAAATTGAGAAACGCG
TGTAAAACATTGTTCGAAAGTATTCGGTACCGTAATAAAAGGAAAgtcag
accggaaaaaaatgaCACTACTGATGCTATTTAATTGGGACGTTATGTAT
TTTTTCGGCTTTAGTCGTACCCAGTCCttagcttgatttttttatgaatc
aGTAAGCGCCCACGATTGTACTCAAAGTATAttaggaaatttgaaaattg
gc Coding sequence (CDS) from alignment at sc0000048:581075..582926 >TCONS_00004819 ID=TCONS_00004819|Name=TCONS_00004819|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0000048:581075..582926 (Clytia hemisphaerica)
ATGATGCAATTCTGTTCAGAGACGTTAAACGAGAAACTTGATATATCAAT
ACAAATAATAGATAGTGTTATCGCAATTATCGTCATTTTATTCGCATTAT
TCGAAAACATTTTCGTTTTATTGTTGCTATGGAAACACCGACATTTTCGA
ACACCGACGGATATTTTCATCGCTTGTTTAACAGTTGCCGATTTATTCGT
GATTACTTTACCTGTCCCATTTTTTATCGGATTATATATCGGGAAATGGA
ACGCGTCGCAACCATGGCAACAAGCATACCATGTTGTTGATACAATATCA
AGCACGATTTCAATAACTTGTTTATCAATTCTAGCGTTCGACCGATATTT
CATCATTGTTCATCCATATATCTATCAACGGAAGATTACTCTTAATCTCA
GCTTGATTATGGTTGCCTCGATATGGGTGTACGGAATCAGTACGGGTGTA
TTACGTATTGTTTTTTCAGAGGAAACATTCTCTTGGTTTACTATACTTGT
GTTATACGGTTGGCCAATCAGTTTGATCATTTTCTGTCATGTAAATGTAG
CTATCATAGCTAAACAACACGCCAAGAAGATTTTGAAATTACAAGTCCAT
AAAACGTCTGGTAAAGGTATTAAAGAACGGTATTCGGTATTACGGAAATT
ATCGAAAGCTAAATTTCACTCcaagaaaaatgacaaaaaggtATCAATCA
AAAGTaatcatttgaaaataaattcggAAATTGAGATTGATTATTCTTCT
GAATGTAGCGTCTCTACCAACTCAAGTCGACAAAAAACAGAACCTACGAA
GAGCGATTCAGCCATCCAAGTTCGTAATTTGAGTCGAGCTGATTCAAGTA
GTATTCGTTTCCGTGTATCGCTGAATTACAGTAATGTAACCTTACAGAAG
AATATTGAAGAAATTGTAAATGAGGAAAGACAAGATGAAgcaaataaaga
gaaaaatggaCGCAAAAAATTACCACCTCTAGCACGACGGAGTAAAATTT
TATCCTATATTAATGAAGAATTAAACGATAATTTATCAGAGCAAAACCCA
TCAAATTCTACTGATAAGGAAGGGAGCGACGCAAAAAAACCTGAAGTAGA
ACCTGCGAAACAAGAAGTTTTAAAACACTCAATGTCATCACCACAAATCT
CCTTAAAATCTGACGCTAATAGAAAATTAAAAGCCACTTTAAAGAAATCA
GATTCCCTGCCTTTCACAAATGCTGCCGGTCAACCGACACTTGGTCGTCA
ATTCCGACATATTGTTCGTCGTAACATCGATAAAAACCGTCAAAAACGTT
TAATCCGTGAAGAGGTCATGAAAATTATACATCAGATACGTCGTTTAAGA
AGAGAACTAAAAGCGGCTATTTTACTGACCATAGTCATGGTGATTTTCCT
TTGTTTATGGATGCCATTTTGGTATATTCACATTATGGTGATTGGTGGAA
GATTTGACGGAACCGATAAATCACATTGTttattattgaaatatttcaaa
cttttacaTTATGTCAATGCTACTATCAATCCAGTTTATTATGTACTTTT
AAATTCGAAATTGAGAAACGCGTGTAAAACATTGTTCGAAAGTATTCGGT
ACCGTAATAAAAGGAAAgtcagaccggaaaaaaatgaCACTACTGATGCT
ATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004819-exon-sc0000048-1491911889:581075..582926 | TCONS_00004819-exon-sc0000048-1491911889:581075..582926 | Clytia hemisphaerica | exon |
| TCONS_00004819-exon-sc0000048-1510915933:581075..582926 | TCONS_00004819-exon-sc0000048-1510915933:581075..582926 | Clytia hemisphaerica | exon |
| TCONS_00004819-exon-sc0000048-1575043694:581075..582926 | TCONS_00004819-exon-sc0000048-1575043694:581075..582926 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:581075..582926 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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