TCONS_00004816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004816
Unique NameTCONS_00004816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004816 ID=TCONS_00004816|Name=TCONS_00004816|organism=Clytia hemisphaerica|type=transcript|length=675bp
AAGCATGATAGTTTTCAGTTTGGAAAATTCTGGCATCTGTGTCGAGTCGT
TGATAAATTTATGGGGTATTTCAAACGCTGAATTGTTTAAAGCAACTGCA
GATAGGATCAATAAAGACTTTGATTCAACAAATTCACGGACTTGGCCACC
AACAGTGGAAACGCTGACAGAAACGAAAAACGATGAAACCGCTTTAAAAC
AGTTTTTGGATATCCTcattagaaacaaagaaagagtTAATGACACGAAG
GTAATACAATTGAtgccttcccagctggcacacaaagtTGTTTTAACGGC
ATCTTATAAACGTATGCCGTTCATTCAATTTGTTGGTGACCAACCCGTTT
ACACCCACATGATGGAATTGAAATACGAAAACAGTGAGATGTTCGAAAAG
GTCATTCCTATTCTGGCCCCGTTTCACACGCAAATGTCCTTCATTAGTGC
AATTTTCAAGAGAATCAATGGATCGGAAATATCTGATTTGGTTGTCAATG
CTGGACTTATAGCAGAGGGATCAGCAGAGCAGGCATTGAAAGGAAAACAC
TACAACCGAGCACAGCGTCTCTACAAATTAATCTACGAATCACTTGCTCG
GATTTTGATCAATCTTGGTATCGACAAAGAAATCAAATTCCCGGAAAATC
TAAAATCCTTTATGAAAAATGTTGG
Run BLAST on NCBI

protein sequence of TCONS_00004816-protein

>TCONS_00004816-protein ID=TCONS_00004816-protein|Name=TCONS_00004816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
SMIVFSLENSGICVESLINLWGISNAELFKATADRINKDFDSTNSRTWPP
TVETLTETKNDETALKQFLDILIRNKERVNDTKVIQLMPSQLAHKVVLTA
SYKRMPFIQFVGDQPVYTHMMELKYENSEMFEKVIPILAPFHTQMSFISA
IFKRINGSEISDLVVNAGLIAEGSAEQALKGKHYNRAQRLYKLIYESLAR
ILINLGIDKEIKFPENLKSFMKNV
Run BLAST on NCBI

transcript from alignment at sc0000048:355940..356614

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004816 ID=TCONS_00004816|Name=TCONS_00004816|organism=Clytia hemisphaerica|type=transcript|length=675bp|location=Sequence derived from alignment at sc0000048:355940..356614 (Clytia hemisphaerica)
CCAACATTTTTCATAAAGGATTTTAGATTTTCCGGGAATTTGATTTCTTT
GTCGATACCAAGATTGATCAAAATCCGAGCAAGTGATTCGTAGATTAATT
TGTAGAGACGCTGTGCTCGGTTGTAGTGTTTTCCTTTCAATGCCTGCTCT
GCTGATCCCTCTGCTATAAGTCCAGCATTGACAACCAAATCAGATATTTC
CGATCCATTGATTCTCTTGAAAATTGCACTAATGAAGGACATTTGCGTGT
GAAACGGGGCCAGAATAGGAATGACCTTTTCGAACATCTCACTGTTTTCG
TATTTCAATTCCATCATGTGGGTGTAAACGGGTTGGTCACCAACAAATTG
AATGAACGGCATACGTTTATAAGATGCCGTTAAAACAactttgtgtgcca
gctgggaaggcaTCAATTGTATTACCTTCGTGTCATTAactctttctttg
tttctaatgAGGATATCCAAAAACTGTTTTAAAGCGGTTTCATCGTTTTT
CGTTTCTGTCAGCGTTTCCACTGTTGGTGGCCAAGTCCGTGAATTTGTTG
AATCAAAGTCTTTATTGATCCTATCTGCAGTTGCTTTAAACAATTCAGCG
TTTGAAATACCCCATAAATTTATCAACGACTCGACACAGATGCCAGAATT
TTCCAAACTGAAAACTATCATGCTT

Coding sequence (CDS) from alignment at sc0000048:355940..356614

>TCONS_00004816 ID=TCONS_00004816|Name=TCONS_00004816|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000048:355940..356614 (Clytia hemisphaerica)
AACATTTTTCATAAAGGATTTTAGATTTTCCGGGAATTTGATTTCTTTGT
CGATACCAAGATTGATCAAAATCCGAGCAAGTGATTCGTAGATTAATTTG
TAGAGACGCTGTGCTCGGTTGTAGTGTTTTCCTTTCAATGCCTGCTCTGC
TGATCCCTCTGCTATAAGTCCAGCATTGACAACCAAATCAGATATTTCCG
ATCCATTGATTCTCTTGAAAATTGCACTAATGAAGGACATTTGCGTGTGA
AACGGGGCCAGAATAGGAATGACCTTTTCGAACATCTCACTGTTTTCGTA
TTTCAATTCCATCATGTGGGTGTAAACGGGTTGGTCACCAACAAATTGAA
TGAACGGCATACGTTTATAAGATGCCGTTAAAACAactttgtgtgccagc
tgggaaggcaTCAATTGTATTACCTTCGTGTCATTAactctttctttgtt
tctaatgAGGATATCCAAAAACTGTTTTAAAGCGGTTTCATCGTTTTTCG
TTTCTGTCAGCGTTTCCACTGTTGGTGGCCAAGTCCGTGAATTTGTTGAA
TCAAAGTCTTTATTGATCCTATCTGCAGTTGCTTTAAACAATTCAGCGTT
TGAAATACCCCATAAATTTATCAACGACTCGACACAGATGCCAGAATTTT
CCAAACTGAAAACTATCATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002725XLOC_002725Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004816-proteinTCONS_00004816-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004816-exon-sc0000048-1491911889:355940..356614TCONS_00004816-exon-sc0000048-1491911889:355940..356614Clytia hemisphaericaexon
TCONS_00004816-exon-sc0000048-1510915933:355940..356614TCONS_00004816-exon-sc0000048-1510915933:355940..356614Clytia hemisphaericaexon
TCONS_00004816-exon-sc0000048-1575043694:355940..356614TCONS_00004816-exon-sc0000048-1575043694:355940..356614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:355940..356614 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.152265	0.148482	0.258603	0.300602	0	0.0811304	0	0.348008	0	0	0	0	0.0506333	0.420666	0.0432305	0.105226	0	0.202967	0.0809305	0.254064	0	0	0.138119	0	1.03714	0.707379	0.192455	0.30395	0.133703	0.172187
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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