TCONS_00004815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004815
Unique NameTCONS_00004815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004815 ID=TCONS_00004815|Name=TCONS_00004815|organism=Clytia hemisphaerica|type=transcript|length=294bp
TACGAAATGCcggtatttttttcttgaaattcctTAATCTTGGtcaaaaa
atcctcaaaacgtccctcacatgactaaaggtttAGTGCTACGAATGTGG
TGCTGGCTTGCTTTTGGTATATTTTTAGTCTTTATATTTTCCATAGTTTT
ATTCTTCCTGTTTAGAGAAAGTATCAAATGGAGTCTATTTTATCTCTCCT
GCAAAATAACAAGGAACTTGACAATGTGGAATTAATGTCTGAGGTATGAA
TTCAAGCATGTTTTTTTCTACagcaaaattcattttttatccTT
Run BLAST on NCBI

transcript from alignment at sc0000048:316503..316796

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004815 ID=TCONS_00004815|Name=TCONS_00004815|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0000048:316503..316796 (Clytia hemisphaerica)
AAggataaaaaatgaattttgctGTAGAAAAAAACATGCTTGAATTCATA
CCTCAGACATTAATTCCACATTGTCAAGTTCCTTGTTATTTTGCAGGAGA
GATAAAATAGACTCCATTTGATACTTTCTCTAAACAGGAAGAATAAAACT
ATGGAAAATATAAAGACTAAAAATATACCAAAAGCAAGCCAGCACCACAT
TCGTAGCACTaaacctttagtcatgtgagggacgttttgaggattttttg
aCCAAGATTAaggaatttcaagaaaaaaataccgGCATTTCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002724XLOC_002724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004815-exon-sc0000048-1491911889:316503..316796TCONS_00004815-exon-sc0000048-1491911889:316503..316796Clytia hemisphaericaexon
TCONS_00004815-exon-sc0000048-1510915933:316503..316796TCONS_00004815-exon-sc0000048-1510915933:316503..316796Clytia hemisphaericaexon
TCONS_00004815-exon-sc0000048-1575043694:316503..316796TCONS_00004815-exon-sc0000048-1575043694:316503..316796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:316503..316796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.183088	0.472295	0.576944	0.4436	0.544427	2.53972	1.41401	0.869009	0	0.284067	0.280153	0.57923	0.945494	0.261312	1.80257	2.88267	1.38147	1.86646	0	0.615786	0.0666475	0.876634	0	1.19663	1.22392	0.621489	0.494718	0.507431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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