TCONS_00004800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004800
Unique NameTCONS_00004800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004800 ID=TCONS_00004800|Name=TCONS_00004800|organism=Clytia hemisphaerica|type=transcript|length=1631bp
GTATGATTGCAGAAGGCACAAAATTTGAGTGAGATTTGTAAGAAGATATT
TGACGAAGACGAAACTAAACCCCGCAAAGAATTCGACCATGTCTGaacaa
aacgaaagtaaaagGATCAAACTATTGAatgatcaaaacaaatatgaCGA
ATTCATCCTGGAAAGGCGGACAACATCCTCCAAAGCTGACCTTTATCTGT
ATACCATACCAAAAGAGGATTTCACAAGTGTTATGATTCACTACAAAACA
AGCTCTACTGAAAAACTACCTTTGAAATTTCTCTATACTACAGAGTGTAA
AGAGACACGCGATAAACAGAAACTTCTGTGGGTAATCGAAGATAATTACA
GAAGAAGTGATCAAGATAAAGAAGGGTCAAACTTGGAGCTTATCAGTGAA
GACATGGAAATCTCTCACACAGATGTATCTAATTTCCGCCAAGAATTCAA
TCAAAGAAGAATCAAATATGACAACGAACACAAAAATGGTCAATATTTTG
TGAATGAGTTTCAAATTGCATTTTCCTTAATTCCAAAATATACTAGTACC
AAAGTTGAAAAAAAGTCGTCATGGTTTGGTGCTGTTTCTGAATCAATCTC
AAACTCGAGTAGTAGCTCTTGGAAACTGACCACAGAGATGCTGAAATCTT
TTCTACGTGAGACCGAGGTTGTAAAAGAATGGATGTGTCACCTACTCACC
AATAATATGAATATCAACCTTGAAATCGCCGGGAGATTGGCAATAAAGTT
CGTAGAAAAAATTACAGTTAACATACAATGTAAAGGTTTCAACTTGTACA
CTTTATTCATCACACTTGCCGAAGTTCTCTTGAGTGAAATTGATCAGAAC
TTTTGGGAGATGTTCAATTTAGATGAAAATATGAGACAAATACTTTCATT
CGTAGTACCAAAATTGTTAGCTGCCATAACAACTATTGTCGAGAATCAAT
ATGTTGCAGTATTTTGGCTTGCTGTAGGCATCATAGCACTCATTTTCAAA
AAGATGTCGGAATGGTACAATTTTCCTGATTTATTTGGTGGGGAAGCATC
ATATGAACGATTCTTCAAACTTTGTGAAAGAGTCTTTTTGCCGTTGACAC
AGAATTTGTATCAGCATTTTAGTATTGCATGaaactttttatgtttttac
aagcactgcacttataagcatatttgccttcattttctgattttggctgg
aattttccgattttccgatttttcctACAATTTTGTTTAAGatataaaca
tttttcaagcattttttagCCTTCTCAATCGCTCTTTCTAAGCATATCTC
CGAGCCTGCTTAAAAAACACGTAATTCGTCAGCCGGAGGTACTCGATCGA
AAAAGAGCGTATGAGCGGCACGAAATAAGGAAGGCCTCACAAATCAGATC
TTTACAATGcagaaaaagattgaaattgtAATTTGAAATGGGACCCATAT
ACACAatgcaattttttcaaaaatcattgcACTGTTCAAATTATCTTAAA
TTTTAACCAATTTTACCCGAATATTTTAtatttaatcaatttttttcggt
GCACTTtcgcttttgtagattttcagaAGCCAAAGTATTTCTTTTGGAGG
CCGTACATATGGCAGGACGTTTAACTTGAGT
Run BLAST on NCBI

transcript from alignment at sc0000048:629461..636166-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004800 ID=TCONS_00004800|Name=TCONS_00004800|organism=Clytia hemisphaerica|type=transcript|length=6706bp|location=Sequence derived from alignment at sc0000048:629461..636166- (Clytia hemisphaerica)
GTATGATTGCAGAAGGCACAAAATTTGAGTGGTAGGTTTATTTGTGAGAT
TGTTGATTGGACTTGACAAAGTTACTAATACTGTTTGGTCTTACATTGAT
GTAAGATCTGTTTGTGATGGTGTACGTTTTTTTATAAGAACAAACTATAT
AAGAACATAAGACTTCGATGGAAAAATTATTAAGAACAATTTAAGAATAT
TTAATGCTTTGCGGAATCAGAAAGACCTGATTTGGGGAGATGGACAAAAA
TAGCGAAAATAAGTACTTGTTAAGAACAATTTTGGGTTTGAAACCCAAAA
AGTTTTGGATGTTCTTATAAAAATAACGTTTGTGTTTTTATTTTTTGAGT
CTGAAGCCCGAAGTATAACCGTAAATTGTATCCAAGACACCGTTCTATTC
GAGGGTCCGTTGTTTTGATTGTTCACGATACTCATTTACTTTGTTTTTTG
TTTATTTTTCTCCTTACCTTTCTATTGTTTTTTTTCTTCTCGTTTTTCTT
TTTATAAGGTTCCTCTCTCCTGGCGGTATAATCTAGCGGTTTTTTGCGTG
AGGGCTGGAACCTTTTAGTGTTTGTATTCTATATTCGTGTTATTACTTAT
ATATAAGAAAAAAAAAGAAAAAAACTGAAATCTTAAACCTTTCTTAAGCA
ATAAAAAAATGAATCCTTAAGATTTGGCTCGCATTCAAAAATTTTGTGTG
AAAACCAAGCGGGTCACGTGGTTTGGATGGGAAATAAGTGGCTTCATTTC
CCATTCAAGAGATTCTCGGGTAAGTTATGGCATGTCTCAAAAAATGAAAA
TTACTATAATTTTTAGATCGCATTAGTCGACAGAAAATGACCAAACAAAC
GACTGAACGTGAAGGGTACTATGATGTAGTTTCTAACCTGATGTGTAACC
TAATTGTTTTTTCGCTGATTGTAATGAAATTAGTAAAAAACGAAAAATCC
TATTTTTTGCTGACGTACTCAGAATTTCGAAAAAAGATTTCTTTTAAATG
ATCGACTTTAGTAGGATACATCTTTGGTGAAAGTTTGAAGACAATTGGAT
AAACGATCCTTGAGAAATTCAATTTTTAGTTTTGATGACGTCATCCATCG
AATTGGAAAAAAAGCATATGTTGTTCCTGTTTATAAAAACAAAGGGGACA
AGAGTGTGGTAAAAAACTACAGACCAGTATCTCTTCTACCTACTTTAGGT
AAAATCTTTGAAAAATGCATCTTTGACTCTATCTATTTTCAAAATAACAA
TCTCTTTACAACTTCTCAATCTGGTTTCCGCAAGGGTGATTCTTGTGTGT
CCCAGCTTTTGTCCATAACGCATGACATCCTGGTAGGTTTCGATGCAAAT
TCACCTTTAGATACTCGTGGAGTATTTCTTGATATTTCTAAAGCTTTTGA
CAGAGTTTGGAACGATGGATTGATTTTTAAACTTAAGTCTTATGGTGTGT
CCGGGCCCCTTCTCTTATTACACCAAAATTTTCTCTCCGGCAGATTGCAG
CGGGTGGTTCTTGATGGCCAAGCTTCCAATTGGACGGAGGTCTTGGCCGG
TGTACCTCAAGTCTCTATTCTAGGACTGCTCTTCTTTCTGATATATATTA
ACGATCTCCCTGAAGGAATTATTTCCATGATCAAAATTTTTGCTGATGAC
TCAATATTCTTCCTTATCCTTGATCATATTTGCTGTTCAAACGAATTGAA
CAGTGATATGCAGAAGGTTAGTGAGTGGGCTCATCAATGGAAAATGACCT
TCAACCCTGATCTTTCTAAACAGGCTGTTGAAGTGTACTTCACTCGGAGG
ATCTAACTGATCCTCCAGAAATTTATTTAAACAACGCAGCCATTGTGCAA
AGAGGGGAGGAGAAACGTAGGGCAGGGCGGAGGATACAACCACCATTCAA
GGCACCATTTTGTAGTACTAAACGTTACCGTGCCTCCTTTTTTCCCTTTT
GCATCAATGAATGGAATAACTTTGGCGAAAATATACGAAATCTTCCTTCT
TTTTCATTATTCAAACAAGCGATTCTTAAATTTTTTAGACCTTGCGCTAA
CTCAGTTTTCAGGGATAGTGACAACGATGGCGTGGTTCTACTTAACCGAT
TAAGGGTTTGTTTTGTTTCAGTCATCTTTGGGACCAAAAATTTAGACATA
ACTCTGCAGACACAATCGACCCATTCTGCAATTGTCAAAGTAATTCTGTT
GAAACGACACAATATTTCCTGATGCATTGCTCTGATTACTCCAATGACAG
ACTTGTTATGTTCGACAGCCTTCTTCAACTTGACATAACCTTGTTTCCAT
TTAACCCCGAAACATTGTGTAGAAAGAATACTTCTTTATGGCGATTCCGA
TTTAAGCATTGTTCAAAATCATGATATATTGAACATAATGATAAAATTCA
TCTGTGATACAAGTCGTTTTGGGGGACTGTTATTCTAGCCTTTTGCTCTA
CTAGCTCTTTTTGTTTTTCATTTTGTTAATAATTATTCCTCTGTAGTTAG
TTTTTTTAGTCATTACTGCGCCAATATTGTTTAGCTTATTTGGGGTTCCT
TCCTCCTGGCGGTATGATCTGTGGTCCTTTTGCGGGGGGCTAGGAACCTT
TGCAGATTTGTAATATTTGTTCGTGTTACCTATATATACTATAAAAATAA
ATCTAGAAGGAGTTGGAAGCTCGTTTATTGTCTTTCTTTTAGGCCCGCTG
CGCGGACCTGACTGAATGATAGAAATGTGCCGAGTGGTAAAACTTCAAAC
TAATTCGCTGGAGGACAGAATCAAGTTAATCAGGGCCAAATTTGGATGTT
CTTGGATCACTCGTTGACCAAAAATGGTCAAAAAACGGTCAAAATCTAAA
AAAGTGGATTTCTGTCAAATATTTGCTTTTTTTTTTACTTTTTAGCTTAA
AATCTTGCTGAAACGACTCACTTAAATTTTTTTTTACTTGGCCATGAAGC
CCAATCCGATTCCTACGAGTTAGACCAAAAATGACGATTTCTAACTCAAA
CTAGGCTTCGCCCTCCATAGCCCATGTCTGATATATACGACATTGGCACT
TAAAGGGTTAAGAGTCACTTCATCATTTTTTTGTTTTTTTTGCTGAAAGT
GACCAATGAATAATTTTAATGTTTATTAATTGTTTATAAGTGGATTAATT
TTGGTGGAGGACAAATTTGGCGATTCGGCGAATTTTGACAGAACTTGCAA
AATTAAATCTCCGCCAAATTTATGAAAATACTTCAGGAGTATACTTTATA
GTAATTTTCGTCCATCTTAGTGTATCTAAATTCCCGACTCGCCAAGCTAA
ATCCCAGCCAGAGGGATGTTTGAAACTTAATTTTTTTCCGTAACTGTTTT
CTTTCTTGAAAATTTCAAATTATTTGTTATAGAGATTTGTAAGAAGATAT
TTGACGAAGACGAAACTAAACCCCGCAAAGAATTCGACCATGTCTGAACA
AAACGAAAGTAAAAGGTAACTCACATTAAACATACGTCATCTTTTATAAT
TACACCATATACTGAAATTTTCAGATGTTCTTAGGATGTTCTGATTTTAA
ACATTTTTTGCGTTTTTTAGGTCTAATTTCTACAGGAATTGCATGAGGCT
GGAAAGCTTTACATTTTTTTCCTCGAAGAATCATTTTCTCTTCCATACGA
CTTTGTTTTTATAAAAAAAGACCGGGTTGATATACGCATTTTTTATAAGT
ACATAAATGAATTCAATAGTATTAAGAAAATTCCCAACACCAGAACTAAA
GACAAAAATATGAAAAATAATCCAGAGCAATTCTAGCCTCAGATTTCAGC
AATGACATCTTCTGGCTAAGGATTAATCCGATTAGAGGAAGATCATATTT
TAAGAGCATTTACCTGAAAATGAAAAAATTCTTCAATGCGTTTAGGGTTC
TAAGCCCAAAGTTCCGTTCTTTTTATGTTCCTTTCAGTTCATGGACCCGG
GTTAATAGAAAGCCTAGCCGACAGTCGTGAGCCACATAAAAAACCATTCA
TTGATGATTACTAGGCTATCCATGTAAAACGTTGACTGTATTTTCTTTTA
AATTAAATTCTCAGGATCAAACTATTGAATGATCAAAACAAATATGACGA
ATTCATCCTTAAGCGGACAACATCCTCCAAAGCTGACCTTTATCTGTATA
CCATACCAAAAGAGGATTTCACAAGTGTTATGATTCACTACAAAACAAGC
TCTACTGAAAAACTACCTTTGAAATTTCTCTATACTACAGAGTGTAAAGA
GACACGCGNGGGGGGGGGGGGGTCCTAATAAGGTCTGGGGAGGTGGAAAA
TTATCGAAAAATTAACAAGCGGGGAGGCCCGTTTATTTGGAACCTAAGAG
TACTGGGCTATCCATGTAAAACGTTGACTGTATTTTCTTTTAAATTAAAT
TTCCAGGATCAAACTATTGAATGATCAAAACAAATATGACGAATTCATCC
TGGAAAGGCGGACAACATCCTCCAAAGCTGACCTTTATCTGTATACCATA
CCAAAAGAGGATTTCACAAGTGTTATGATTCACTACAAAACAAGCTCTAC
TGAAAAACTACCTTTGAAATTTCTCTATACTACAGAGTGTAAAGAGACAC
GCGATAAACAGAGTAAGTTTAATTTGTTGAAAAATGTGTGAGAATCATTG
AAGCTTTATAAAATCCACGCAGAGTAGATCACCAGCGAACTAGAATCGTC
TGACATGAACGATAAAAATTCAAACGAGGCCAGGCCAAGACTAATCCTTT
TATTCTCAATGAGTCTCATGAAAACAATAAAACATATTAAAAAAGGCACT
GAGTTTGACGGTGGAATATAAAAAAAGATCTCTTGTTAGAAAAACCACTG
ACCACTGGAACTTCCTTTTCCCTGTTTTGGCCAAAAAAGTCTAGAAAATT
TATCTTTTGATATGCTATTTTCTTTCAAGAACTTCTGTGGGTAATCGAAG
ATAATTACAGAAGAAGTGATCAAGATAAAGAAGGGTCAAACTTGGAGCTT
ATCAGTGAAGACATGGAAATCTCTCACACAGATGTATCTAATTTCCGCCA
AGAATTCAATCAAAGAAGAATCAAATATGACAACGAACACAAAAATGGTC
AATATTTTGTGAATGAGTTTCAAATTGCATTTTCCTTAATTCCAAAATAT
ACTAGTACCAAAGTTGAAAAAAAGTCGTCATGGTTTGGTGCTGTTTCTGA
ATCAATCTCAAACTCGAGTAGTAGCTCTTGGAAACTGACCACAGAGATGC
TGAAATCTTTTCTACGTGAGACCGAGGTTGTAAAAGAATGGATGTGTCAC
CTACTCACCAATAATATGAATATCAACCTTGAAATCGCCGGGAGATTGGC
AATAAAGTTCGTAGAAAAAATTACAGTTAACATACAATGTAAAGGTTTCA
ACTTGTACACTTTATTCATCACACTTGCCGAAGTTCTCTTGAGTGAAATT
GATCAGAACTTTTGGGAGATGTTCAATTTAGATGAAAATATGAGACAAAT
ACTTTCATTCGTAGTACCAAAATTGTTAGCTGCCATAACAACTATTGTCG
AGAATCAATATGTTGCAGTATTTTGGCTTGCTGTAGGCATCATAGCACTC
ATTTTCAAAAAGGTAAACACGGTATCTTGAATTCTTTAAATGGCTTTAAG
AGTATTTAGTGAAGTTGCATTTTTCTACTCTTCTCCTATCATTTTAGTAA
AGTATAATTATCACCACATTCACCATAGGCATAATCAGATGATTTGACAT
TTTAGGCCTGTAATACACCCCTGTGTCACAGACCCGCTGGGACCCCAGTC
CCCACTGGAAAATCTGGCAAAAAATTCGTCCCCGGTAGGAAAATACACTG
GAATTTTAGCCCCACTGGGAAATTTATTTATTTTGCATCCCCCACAAGAA
ATTGGTAGAAGGTAGAATACTTAGATCTCGAGATATATTAGTTTGCAGTT
TTGGACACTAGTTTGGGCAATCCGGTGGTCCGTGTGTCAAAGGGTTAAAC
CAACCCTATATATCAAACTTCGGTTAATATCCGACTGAATTTAAAATATA
AATGAAAATATCATTTTTGTTCTCTTAGATGTCGGAATGGTACAATTTTC
CTGATTTATTTGGTGGGGAAGCATCATATGAACGATTCTTCAAACTTTGT
GAAAGAGTCTTTTTGCCGTTGACACAGAATTTGTATCAGCATTTTAGTAT
TGCATGAAACTTTTTATGTTTTTACAAGCACTGCACTTATAAGCATATTT
GCCTTCATTTTCTGATTTTGGCTGGAATTTTCCGATTTTCCGATTTTTCC
TACAATTTTGTTTAAGATATAAACATTTTTCAAGCATTTTTTAGCCTTCT
CAATCGCTCTTTCTAAGCATATCTCCGAGCCTGCTTAAAAAACACGTAAT
TCGTCAGCCGGAGGTACTCGATCGAAAAAGAGCGTATGAGCGGCACGAAA
TAAGGAAGGCCTCACAAATCAGATCTTTACAATGCAGAAAAAGATTGAAA
TTGTAATTTGAAATGGGACCCATATACACAATGCAATTTTTTCAAAAATC
ATTGCACTGTTCAAATTATCTTAAATTTTAACCAATTTTACCCGAATATT
TTATATTTAATCAATTTTTTTCGGTGCACTTTCGCTTTTGTAGATTTTCA
GAAGCCAAAGTATTTCTTTTGGAGGCCGTACATATGGCAGGACGTTTAAC
TTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002713XLOC_002713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004800-exon-sc0000048-1575043694:636136..636166TCONS_00004800-exon-sc0000048-1575043694:636136..636166Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1575043694:632702..632784TCONS_00004800-exon-sc0000048-1575043694:632702..632784Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1575043694:631555..631760TCONS_00004800-exon-sc0000048-1575043694:631555..631760Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1575043694:630555..631237TCONS_00004800-exon-sc0000048-1575043694:630555..631237Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1575043694:629461..630088TCONS_00004800-exon-sc0000048-1575043694:629461..630088Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1510915933:636136..636166TCONS_00004800-exon-sc0000048-1510915933:636136..636166Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1510915933:632702..632784TCONS_00004800-exon-sc0000048-1510915933:632702..632784Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1510915933:631555..631760TCONS_00004800-exon-sc0000048-1510915933:631555..631760Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1510915933:630555..631237TCONS_00004800-exon-sc0000048-1510915933:630555..631237Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1510915933:629461..630088TCONS_00004800-exon-sc0000048-1510915933:629461..630088Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1491911889:636136..636166TCONS_00004800-exon-sc0000048-1491911889:636136..636166Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1491911889:632702..632784TCONS_00004800-exon-sc0000048-1491911889:632702..632784Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1491911889:631555..631760TCONS_00004800-exon-sc0000048-1491911889:631555..631760Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1491911889:630555..631237TCONS_00004800-exon-sc0000048-1491911889:630555..631237Clytia hemisphaericaexon
TCONS_00004800-exon-sc0000048-1491911889:629461..630088TCONS_00004800-exon-sc0000048-1491911889:629461..630088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:629461..636166 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.399187	0.316282	0.22599	0.27637	0.0283766	0	0	0	0.0374314	0.0260419	0.0212382	0.0498875	0	0	0.113336	0	0.149834	0.134764	1.28564	0	0.195551	0	0.287229	0.253387	0.0461942	0	0.410523	0.365101	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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