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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004797 ID=TCONS_00004797|Name=TCONS_00004797|organism=Clytia hemisphaerica|type=transcript|length=1590bp
ATTTAGTTTTAAATGTTAGCCTTTTTCTCTTACatgaaataataataaca
atataataattataataattGATAGTCGAGTAAATAGTATTTTGGATTTT
AACAACAACGATAACTAAATTGTAAGACCTGAAAACCTTTCAGCTGAAAT
TAATTAAGCCTTACTGGACAAGCATTTTATGCagcaaaaatattcattca
aataCTCGTGGGTGATATTTGCATAAAAGATTTCAGGAAAACTGTTTCAA
ATCTCACAATAGTCATGAAATAATCTAATataattaataaattttaaaag
ctAAATAACAAATTTTCCAGACAGAATAACAAAGACGATTATTTTACAAA
AGAATACAGGGAAATTTTCGGGTCTATAAGAGAGGCTCGTTAAAATTTCT
GACaaatgaataattatttttaggtCAACCTTAAAACTAGGGAATTATCT
AGTTATCATGTCTAAGAACACTTCAATTTAGATATGTAAAGCATGCCATT
ATTCCCGGTCCAGGTCCAGGGGACcgttcggggacccccgtttTCTGTAT
GTATGGTAACAGGGATTATATCAATGACGTAACACTTCAAGCAAAACACC
CGGGGCTGATTTCGTTTGTAAGATTACATCATTACGTAATAAAAAATGCT
TACTAcaaaaaacgaaagttaaataagttaaatttacaaaaaaacaaaaa
aacaaacaagacaAACAAAATTTAAAGCAGAACATAAGATAACTCTGTCA
TCTTTATTCCGACTGGCATAAAAactaaagttgaaaaaaaaagatctaag
aaaaaaaaagagtagAAAAACGGTAGAAAAGAAGAGGTTGCAAAAATGAA
GGGTTAAAAAGTTTCGAGCAAAGTTTTTGATGGAAAGGATTAACATGGTG
CCAAAAATTTAGCCTTAGCCATAACAAGAACCTATTTAAAAGGTTGTTAT
TGTTGCATACTTGAAAATCATCCTTTGTATCAGATTTCAAGAGGTCCTAG
ATGACATTTCACAATTTTTGGGCAGGCCCCAATCCACAAATATAGGTTCA
TGTTAAGAATATAGGTTTAGTTTTGgtaaaaagcaaaaagaaaaacatta
gaGAGAAGTCTCTATTCCAAGGTAGTTTACATTAAAATGGCACTGTGTCA
TTTCATTTTATCAATGGTCAAATTAGTTTTGAGTAAGAGTTATTTCAATA
AAGGACACAAAATATATCTGGATTCAGACGTAAAATACCTTGGGATTAAA
AAGGACTAGCCAGGCACATTATTTAATAAATACTAATATAaagttttcat
acaaaaaaagaGGATGTTTGTCCTTCGTAGTAACGTTACTataatgtttt
ctaaaattccTTCGTGTATAAAAAAAAGCCAGAAAATatgggaaaaaaaa
ttgaataataagTTAATTTTCTTATGCACTAATATGTAGATACtattata
atataaaatttggataaatttctcttttttaaaaaaaaatgacgtTTAAG
TTTATTATTTTTGAAGACACCATTTCCAAAAATGAACCAAATTATTAGCC
CCAAATAAATCTgtcaaacttttcaattttaagCCTAAAC Run BLAST on NCBI transcript from alignment at sc0000048:528553..530499- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004797 ID=TCONS_00004797|Name=TCONS_00004797|organism=Clytia hemisphaerica|type=transcript|length=1947bp|location=Sequence derived from alignment at sc0000048:528553..530499- (Clytia hemisphaerica)
ATTTAGTTTTAAATGTTAGCCTTTTTCTCTTACATGAAATAATAATAACA
ATATAATAATTATAATAATTGATAGTCGAGTAAATAGTATTTTGGATTTT
AACAACAACGATAACTAAATTGTAAGACCTGAAAACCTTTCAGCTGAAAT
TAATTAAGCCTTACTGGACAAGCATTTTATGCAGCAAAAATATTCATTCA
AATACTCGTGGGTGATATTTGCATAAAAGATTTCAGGAAAACTGTTTCAA
ATCTCACAATAGTCATGAAATAATCTAATATAATTAATAAATTTTAAAAG
CTAAATAACAAATTTTCCAGACAGAATAACAAAGACGATTATTTTACAAA
AGAATACAGGGAAATTTTCGGGTCTATAAGAGAGGCTCGTTAAAATTTCT
GACAAATGAATAATTATTTTTAGGTCAACCTTAAAACTAGGGAATTATCT
AGTTATCATGTCTAAGAACACTTCAATTTAGATATGTAAAGCATGCCATT
ATTCCCGGTCCAGGTCCAGGGGACCGTTCGGGGACCCCCGTTTTCTGTAT
GTATGGTAACAGGGATTATATCAATGACGTAACACTTCAAGCAAAACACC
CGGGGCTGATTTCGTTTGTAAGATTACATCATTACGTAATAAAAAATGCT
TACTANGCTAAATAACAAATTTTCCAAACAGAATAACAAAGACGATTATT
TTACAAAAGAATACAGGGAAATTTTCGGGTCTATAAGAGAGGCTCGTTAA
AATTTCTGACAAATGAATAATTATTTTTAGGTCAACCTTAAAACTAGGGA
ATTATCTAGTTATCATGTCTAAGAACACTTCAATTTAGATATGTAAAGCA
TGCCATTATTCCCGGTCCAGGTCCAGGGGACCGTTCGGGGACCCCCGTTT
TCTGTATGTATGGTAACAGGGATTATATCAATGACGTAACACTTCAAGCA
AAACACCCGGGGCTGATTTCGTTTGTAAGATAACATCATTACGTAATAAA
AAATGCTTACTACAAAAAACGAAAGTTAAATAAGTTAAATTTACAAAAAA
ACAAAAAAACAAACAAGACAAACAAAATTTAAAGCAGAACATAAGATAAC
TCTGTCATCTTTATTCCGACTGGCATAAAAACTAAAGTTGAAAAAAAAAG
ATCTAAGAAAAAAAAAGAGTAGAAAAACGGTAGAAAAGAAGAGGTTGCAA
AAATGAAGGGTTAAAAAGTTTCGAGCAAAGTTTTTGATGGAAAGGATTAA
CATGGTGCCAAAAATTTAGCCTTAGCCATAACAAGAACCTATTTAAAAGG
TTGTTATTGTTGCATACTTGAAAATCATCCTTTGTATCAGATTTCAAGAG
GTCCTAGATGACATTTCACAATTTTTGGGCAGGCCCCAATCCACAAATAT
AGGTTCATGTTAAGAATATAGGTTTAGTTTTGGTAAAAAGCAAAAAGAAA
AACATTAGAGAGAAGTCTCTATTCCAAGGTAGTTTACATTAAAATGGCAC
TGTGTCATTTCATTTTATCAATGGTCAAATTAGTTTTGAGTAAGAGTTAT
TTCAATAAAGGACACAAAATATATCTGGATTCAGACGTAAAATACCTTGG
GATTAAAAAGGACTAGCCAGGCACATTATTTAATAAATACTAATATAAAG
TTTTCATACAAAAAAAGAGGATGTTTGTCCTTCGTAGTAACGTTACTATA
ATGTTTTCTAAAATTCCTTCGTGTATAAAAAAAAGCCAGAAAATATGGGA
AAAAAAATTGAATAATAAGTTAATTTTCTTATGCACTAATATGTAGATAC
TATTATAATATAAAATTTGGATAAATTTCTCTTTTTTAAAAAAAAATGAC
GTTTAAGTTTATTATTTTTGAAGACACCATTTCCAAAAATGAACCAAATT
ATTAGCCCCAAATAAATCTGTCAAACTTTTCAATTTTAAGCCTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004797-exon-sc0000048-1575043694:529873..530499 | TCONS_00004797-exon-sc0000048-1575043694:529873..530499 | Clytia hemisphaerica | exon |
| TCONS_00004797-exon-sc0000048-1575043694:528553..529515 | TCONS_00004797-exon-sc0000048-1575043694:528553..529515 | Clytia hemisphaerica | exon |
| TCONS_00004797-exon-sc0000048-1510915933:529873..530499 | TCONS_00004797-exon-sc0000048-1510915933:529873..530499 | Clytia hemisphaerica | exon |
| TCONS_00004797-exon-sc0000048-1510915933:528553..529515 | TCONS_00004797-exon-sc0000048-1510915933:528553..529515 | Clytia hemisphaerica | exon |
| TCONS_00004797-exon-sc0000048-1491911889:529873..530499 | TCONS_00004797-exon-sc0000048-1491911889:529873..530499 | Clytia hemisphaerica | exon |
| TCONS_00004797-exon-sc0000048-1491911889:528553..529515 | TCONS_00004797-exon-sc0000048-1491911889:528553..529515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:528553..530499 - |
Blast
The following BLAST results are available for this feature:
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