TCONS_00004790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004790
Unique NameTCONS_00004790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004790 ID=TCONS_00004790|Name=TCONS_00004790|organism=Clytia hemisphaerica|type=transcript|length=826bp
AGGCAGTTGGTTATTAGTCGTGTTTTGTTcagttcttataagaaaatatt
cttaagaaatGGTTACTATGACATTAGCCAATATTAAGTTGCAGAAGTCG
AAGCAAAATATTGCTCGCCTTTCAAAAGaattagaaattttaaaaattaa
gcaTACAATCGCCAGCAATGATTGCTTGGCAAAAGAATCAAAGATTCgtc
attataaaaaagaaaacgcaGATTTGTGCGTTAAACTTGCAAAGGAGAAA
GCCGTCAACGCATCGTTGAAAAGAATTCCCAAGCCCAAGCAGATTGTCAA
GTCACCTCAACCGAAAATTACTGTCGTAAGAGAAGTTTGTGGTGGACCTG
AACCTATCCAAAAACAACTATCATCACAAAATGCACTTCAACCAAAAGGC
AAATTGCTAATCCCGTAACCTGTACAAATGAACGGGTATCTTTTTGTGCC
GGCCGAATACGTGCAATATATGCCTGGCTTTGGATCACTCGAAGTTGCAA
AGGTGAAATGTTCCCAAGACTTCCGGTTGAACAGtgcCAAATCGCAGGAA
AAAATCAATCGAAAAATTATCAAGCCAATAAAGAAAGagGCACCTGTAAA
TACTTCTTACGAAAGCCAATTGGTTGACACCCCTGCATTGCCCATCACTG
TGGCTAAACCAAGCTGTGTCAAAATTGACAGTGTTAACTGGGCAGACTTC
gaatatAACGATGACCAGAAGATAGACTACAATGAAATCATCCAATTTTG
AATTTCCTCTGccaaaaaattgtatattttgtatatttaatatttcatac
tgtaaatagttcttttttaatttctt
Run BLAST on NCBI

transcript from alignment at sc0000048:374296..378599-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004790 ID=TCONS_00004790|Name=TCONS_00004790|organism=Clytia hemisphaerica|type=transcript|length=4304bp|location=Sequence derived from alignment at sc0000048:374296..378599- (Clytia hemisphaerica)
AGGCAGTTGGTTATTAGTCGTGTTTTGTTCAGTTCTTATAAGAAAATATT
CTTAAGAAATGGTTACTATGACATTAGCCAATATTAAGTTGCAGAAGTCG
AAGCAAAATATTGCTCGCCTTTCAAAAGAATTAGAAATTTTAAAAATTAA
GCATACAATCGCCAGCAATGATTGCTTGGCAAAAGAATCAAAGATTCGTC
ATTATAAAAAAGAAAACGCAGATTTGTGCGTTAAACTTGCAAAGGAGAAG
TAAGTACTTTATTTTGTTGACCTCATTAGCCTTTTATTATTTCATTCGTA
CGTCAACGAATTAGAATCTTATTGTAACAGACCTTGATTTTAGTTAAAGC
ATTCCAGTTTGAACTTAAAATTCAAATTATCGAGGTTGGCTTACTGTTCG
ATTATCACATTTGGAGCCCCATTTTCTGGCATTTGTGAATCCATTTTTTC
TTCACTTATTTACACCCCTGTGTCATAGACCCGATGGGACACTCGACCCA
CTGGAATATTTGGCCAAAAATTCGTCCCAGTGGGGAGAATAGCCATCCCT
ACTTGGATATCGAAAGAAATTTTCATCCCCGTTATAGGAAGAAGTTGCTG
CAAGACAGGGGTGTCATATTTGCAATCATCCTGATGTAATGTCGTCTTTT
CTTTTTAGAGCCGTCAACGCATCGTTGAAAAGAATTCCCAAGCCCAAGCA
GATTGTCAAGTCACCTCAACCGTAAGAATTTATAAAAACTCTGATGTTTT
AAAAGTATGTAGGCACTGTCGATGGTTCCGAGCGAATATACCCATTTGTT
ATGATTTATTTCTACTGGTGTTATATCTTTCCGGAGAGTGGGTGGTACAT
TTGGCGGCCAATGACTTAACCTTTCCCCTATTTAGCTTAAAGTTACACAT
TTTGAATTTTTTCAATTAGTCTCAGTTTAATTAATCAAACTTTTCTTTAC
AGGATTGTCGAATCAAAAGGTACATCTGAAGTAGTATTTAAATCACGGGA
CTGGCGCTTGAATGACGCATCACAGTAAGTTTCAAGGGGACATTTTCAGA
TTGATAATAGGAATTAGAATATGGTGTTCCAGGAATAATTCACCACAGTG
TCAATAAGTAATGAATACTTCAAAACGGNCAGTGCCGTAGCAACTGTGGG
GGCAAGGGGGGGGGGCTATGCCCCCCAATAATTTTTTCAAAAATGGTTAT
TTTGCAAAATGTAAAGTTTTTCTTTTTTAATTTCATCATAATTGTCTTTA
TGTGCATGTTTGAGTGTATTTTTAAGCAATCTAGAGCTCAAATTTTCAAA
ATTTTCACTAAACTTCAGCCCCCCCCCCAATATGAAAATGCTTCCTACGG
CACTGTAACAAACAGGTCTACTTCAATAATGGTGATTCTTGTATTAGGAA
AATTACTGTCGTAAGAGAAGTTTGTGGTGGACCTGAACCTATCCAAAAAC
AACTATCATCACAAAATGCACTTCAACCAAAAGGCAAATTGCTAATCCCG
TAAGTAGTATCAAACTTTCACTGAAACAAGTTTTTTTTCTTGATATTACC
CTTGTTCTCCTTTTTGGTTAGAACTTTTATTGAATCAAATGTTTCACTGT
TCGAGTTCAGATTAGATGTGGACTCAGAAACGCCCTAAAATTACATGGTT
TCTAAGGACAGACAGCTTCATACTCCTACAAGGGTAGTTTTTTCTATCTA
ACCTTATTCTATCGGCTGTTTTAATGCCAGATATGATAACATACATGGAT
GCAATGTTGCTACCTACTTTTAACGATGTTTCGATTTCATTTTTAGGAAG
CCTGTACAAATGAACGGGTATCTTTTTGTGCCGGCCGAATACGTGCAATA
TATGCCGTAAGTTGAATAGTGTTTTGATTTTCTTTTTAACAATTTTTCCA
TTTTTTAGCTACTAGCGGTATTATAAAATGATTTTCTATGTACATATTAT
TTGTTTTCATCGAGGCCTAAACTTCGGTGATTCATAATGAAACAATTATC
TTTTGAGCACTAAATTTTGCAGAATATTAGCACTTTACCCAGCCACTTAA
TATATTCAAAGAATGATTGTTTATTTATTTTTCTCTTGTAGTGGCTTTGG
ATCACTCGAAGTTGCAAAGGTGAAATGTTCCCAAGACTTCCGGTTGAACA
GGTAATTGATAAAGTTTTAGGTTCAAGATGACAGAAAAGGGGGTTCGGAC
GAAGAGCAAGATTGGGGGAAACGGTTCCTTTTAGATAGAATAGACCTTAT
CATAAATGACCTAACGAACATCACTTGCTTCTTTTTGAAGTTATTACCAT
GGTGATTAACTCCCAATGGATTTTATTAAAACTACTTCCTATTCATGAAA
TAATCATTTAATGTCTCAAAGGTCATAATCACCATAGTAATTGTTTGAAT
ACGAGGCAAGTGATGTTTGTGACGTAATTTATGAAAAGGGTTTATTCACA
GGGCTGACAGTGATTTGATTTTGGAAAAATTTCAAGGTCGACCCCATTCA
TTGGTTCTGAGGATCAAAATAATTCTTCTAGAGTCACAAAAATTGCTCAT
TATGAAAATCATGAACTCTTATCTATTCTTTCTTTTTCAGTGCCAAATCG
CAGGAAAAAATCAATCGAAAAATTATCAAGCCAATAAAGAAAGGTAAATT
CATCTTTAGTGTGCTTATCAGTATTTTGAAAAGTTTAGTTATACCCAGTG
GGAGAATTTTTCGTCTTTGCCCATTTCAAAATGCAATGTATCCAAAGAAG
AGAGTCATAATAATCTTACTCCTTTGCGCACGCTGTTTCTTTTGAAGGCA
TGATTTTCAGTCACTTCGAGCAATTTGAAGTCCTCAAAACTTGTAGCTTT
TGATTTAGAAGATGATTTTGGTACCATTCAAAAGTTCTTGTTATACTCTT
TCTAAAAACATTTGGTTTATGCCCCTTTAAATAAAGTGGTCAGGAGCTAT
GGCCTCATTATTTTGGCTTGTTTTGGACGCATATACGCGTCCCTTGTGGT
CTAAGGGTTAATGGGTACTCTTCTCTCTTATCTTGGCAAAAAACTTCACA
TCTTCCTTCACAAACAAAATTGATCTTCTTTATTTTTTCAGAGGCACCTG
TAAATACTTCTTACGAAAGCCAATTGGTTGACACCCCTGCATTGCCCATC
ACTGTGGCTAAACCAAGCTGTGTCAAAATTGACAGTGTTAACTGGGCAGA
CTTCGAGTAAGTTTTATTTTTTATTCTATCCTGATCGACTCAACTTAAAA
GCCAAGAAATGTAGAACTAAAATCCCTAGCTCCAGACGGCATTTTTCATT
TGATTTAAAACCCTATTAGCCCCAGGGGGGGGGGGTAGAATCTACCACGC
TGGAGTTATTTTGTGTATATCTCAGAGAAAAAATTTTTAAACGACTTGAA
ACTTTCTGACTTTTAACAAAATCTTATTAAGAGTACTTGTGCAAAATTTT
AGGGTTATAGCTTGTCCAGATCAAGTTTTGTGACTTTATTGTGAAACATG
ACATAAAACCCAGCTAAAATCGCTTAAAACTCAAATTTTAAAGTGCTGAT
AACTTTTGAACTATTTATTCAATCATCATTTATGACGTCGTCAAATTTTT
AAAATCTTACTCATTTTCAGCACAGATTTTAAGATAAAATCTTCATGGAA
ACTGCAAAACCGGCAATTATGTTAAAGAAGAACCTTTTATCTTTCAGAAT
TTTCAAACAGAATCTAAATATCATTATTGGTTCGATTGTAATAGACATTT
TTGTAAACAATATATTTTGGCTTTTTGCCGACAGGTGGAAAATTTGGGAT
GATGTCATCGGTTTTTGAATGACGTCATCAAATTTTTTTTTTGTTCCAGG
AAATGTGTGTCATGATGGAGAACATCTGTACCAAATTTCATGACCGTAGC
ACTCCTAGATCAAAAATAATCAAGGGTGGTAGATTCTACCCCCCCTGGGG
ATACAAAAGTCAAAAAAGCTTGGGGCTAATAGGGTAACTGATTTAACTCG
TTAACAAATTTCAACCGAAATCCGTTTATTAAGATTCTGAAATCCAATAG
AAATCCAAGGTGTACTAGTTTTGAGTTGAAATACAGAACTTTAATACACA
TAACTTCGGATACTATTTTACTTCTTTTGGCATAGAAAATGTTTTTCATT
GTTTTTCTCATTGTTTTTTTTTTTCTTCAGATATAACGATGACCAGAAGA
TAGACTACAATGAAATCATCCAATTTTGAATTTCCTCTGCCAAAAAATTG
TATATTTTGTATATTTAATATTTCATACTGTAAATAGTTCTTTTTTAATT
TCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002709XLOC_002709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004790-exon-sc0000048-1575043694:378351..378599TCONS_00004790-exon-sc0000048-1575043694:378351..378599Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1575043694:377879..377941TCONS_00004790-exon-sc0000048-1575043694:377879..377941Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1575043694:377097..377202TCONS_00004790-exon-sc0000048-1575043694:377097..377202Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1575043694:376744..376799TCONS_00004790-exon-sc0000048-1575043694:376744..376799Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1575043694:376449..376508TCONS_00004790-exon-sc0000048-1575043694:376449..376508Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1575043694:375957..376009TCONS_00004790-exon-sc0000048-1575043694:375957..376009Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1575043694:375394..375508TCONS_00004790-exon-sc0000048-1575043694:375394..375508Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1575043694:374296..374419TCONS_00004790-exon-sc0000048-1575043694:374296..374419Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:378351..378599TCONS_00004790-exon-sc0000048-1510915933:378351..378599Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:377879..377941TCONS_00004790-exon-sc0000048-1510915933:377879..377941Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:377097..377202TCONS_00004790-exon-sc0000048-1510915933:377097..377202Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:376744..376799TCONS_00004790-exon-sc0000048-1510915933:376744..376799Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:376449..376508TCONS_00004790-exon-sc0000048-1510915933:376449..376508Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:375957..376009TCONS_00004790-exon-sc0000048-1510915933:375957..376009Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:375394..375508TCONS_00004790-exon-sc0000048-1510915933:375394..375508Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1510915933:374296..374419TCONS_00004790-exon-sc0000048-1510915933:374296..374419Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:378351..378599TCONS_00004790-exon-sc0000048-1491911889:378351..378599Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:377879..377941TCONS_00004790-exon-sc0000048-1491911889:377879..377941Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:377097..377202TCONS_00004790-exon-sc0000048-1491911889:377097..377202Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:376744..376799TCONS_00004790-exon-sc0000048-1491911889:376744..376799Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:376449..376508TCONS_00004790-exon-sc0000048-1491911889:376449..376508Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:375957..376009TCONS_00004790-exon-sc0000048-1491911889:375957..376009Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:375394..375508TCONS_00004790-exon-sc0000048-1491911889:375394..375508Clytia hemisphaericaexon
TCONS_00004790-exon-sc0000048-1491911889:374296..374419TCONS_00004790-exon-sc0000048-1491911889:374296..374419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:374296..378599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.13021	0.0318475	0	0.36049	0	0.207635	0.237867	0	0	0.523507	0	0	0	0	0	0	0	0	0	0	0	0.15282	0	0	0	0.0420725	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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