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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004768 ID=TCONS_00004768|Name=TCONS_00004768|organism=Clytia hemisphaerica|type=transcript|length=2344bp
cgaaggaatccccttttctggcatttcaaatcaaacaaaggaaccaaaac
aaagagaaaaaatgacattttttattttttaaaagcgTGTGCACGTTTTC
TATTCAGTTTTTTCTAAACGTTTTAAAATTTGCAAGTTTTGCCGTAGCCT
TAGCCTACGGCAACAAAGTTGAATCTTAAAACATTGAACGATAAGAAGTG
CGTGATTCCAATTTGAAGTGAACTTTTGATTGACGTCAATCTGGATCTTT
TTTCTAATCAACTCGAATTAACGTTACATCATAAACAGCCAATCAGATTC
GTAGAAAGTCTCTATAAAACTGACGGGAAAtatcaaatgagaaaaaataa
aataattatatgTAATAACCTATAATTAGCTATAATTAGCTATGTTCGCT
ATCTTGGATATTTGGTAGAGACTTTCTACGAATCTGATTGGCTGTTTATC
ATGTAACGTTAATTCGAGTCCAGATTGACGTCAATCAAAACTTCATTTCA
AATTGGAATCACGCACTTCTTATCGTTCAATGTTTTAATTACATCAACTT
CGACGACGATTCCTTCATAACATAACAAGAAGAGAGTGAGAGTTGTTTAT
GGAAAAAGATTGTGCTACTTCGATCGTGTCGACAAACGANCGATGAAGAC
ATATCCGACGAGCTGAACGCTTACACAGAATTTGAAATAACAGTACAGAA
AACCATTTCACGATTTAAACGATTAGAACGCAGTTTACACTCGAACGTCG
CAAGAAGAAACAGTTACCAAACGTTGTTGCCGGGGGAGTGCGAATAATTG
ATTAGTCACGTGACGAGAACATATAAAAGAAGCGCGTTCATTGTACAATA
GAATTTGTTGTTAGCTTATTTTTAAAGTTCGGGCTGCGTTTAANGAAGCG
CGTTCATTGTACAATAGAATTTGTTGTTAGCTTATTTTTAAAGTTCGGGC
TGCGTTTaaaccaactggcatttgtaattgcttgcagtattcttttgaat
tctattgttccgcgctattgttcggtttgtcaactGCCTAATGATGTCAG
CGtcttggcatttcgttggcatttgaaatgccattttgagcgaaggaatc
cccttttctgtcatttcaaatcaaacaaaggaaccaagacaaagagaaaa
aatgacattttttattttttaaaagcgTGTGCACGTTTTCTATTCAGTTT
TTTCTATACGTTTTAAAATTTGCAAGTTTTGCCGTAGCCTTAGCCTACGG
CAACAAAGTTGAATCTTAAAACATTGAACGATAAGAAATGCGTGATTCCA
ATTTGAAGTGAACTTTTGATTGACGTCAATCTGGATCTTTTTTCTAATCA
ACTCGAATTAACGTTACATCATAAACAGCCAATCAGATTCGTAGAAAGTC
TCTATAAAACTGACGGGAAAtatcaaatgagaaaaaataaaataattata
tgTAATAACCTATAATTAGCTATAATTAGCTATGTTCGCTATCTTGGATT
TCTGGTAGAGACTTTCTACGAATCTGATTGGCTGTTTATCATGTAACGTT
AATTCGAGTTGATAGAAAAAAGATCCAGATTGACGTCAATCAAAAGTTCA
TTTCAAATTGGAATCACGCACTTCTTATCGTTCAATGTTTTAATTACATC
AATTTAAAAAAAGTTCGACGACGATTCCTTCATAATATAACAAGAAGAGA
GTGAGAGTTGTTTATGGAAAAAGATTGTGCTACTTCGATCGTGTCGACAA
ACGAGAAAATTTCAATAAAGAAACGTCTTTCCCTTAGTACCAGAGCTGCA
AACATGACCGATGCATCTGCCACAATACCATATAGATGTCAATATTCATC
GAAAAGGAACATTTGTCATCTATTCATCAGCTTCACCATTTTCAAGTGAC
ACCCTTTCATTATGCATATGCATAAAATATAACACGATGAAGGTGTATCT
TTCTCTGTTCATGTGTTTTGTCATTACCTTGTACTTTGAAAACCACGAAA
AGAGCTGCTCACAAACTTCCGTATTGACCTGAATTAAATTAAAAAATAAT
TTGAATTCATTTATGGTTTAACACCCTTTCTATATTAAAGTATAATAGAA
AGCCTAACGAAATATTGTAACTGATTAAATGTTGGTAATCTATTATTTTT
AACGAAATAACCTACGTTATCCAGTGTTTCACTGTGATCAGGGTTACAAT
TTGCACGACACCATAAGTCGACGTGATTTTTGAAATGGAATCTATCAGAT
CGATAGTCCATGTCTGCCAGCCTTTCTGATACGTTCCTCCGGTTCATTGC
GTATCTTTTGAGATGGCATGCGTCATCATATACAATGCATTCTA Run BLAST on NCBI transcript from alignment at sc0000048:2000..5020- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004768 ID=TCONS_00004768|Name=TCONS_00004768|organism=Clytia hemisphaerica|type=transcript|length=3021bp|location=Sequence derived from alignment at sc0000048:2000..5020- (Clytia hemisphaerica)
CGAAGGAATCCCCTTTTCTGGCATTTCAAATCAAACAAAGGAACCAAAAC
AAAGAGAAAAAATGACATTTTTTATTTTTTAAAAGCGTGTGCACGTTTTC
TATTCAGTTTTTTCTAAACGTTTTAAAATTTGCAAGTTTTGCCGTAGCCT
TAGCCTACGGCAACAAAGTTGAATCTTAAAACATTGAACGATAAGAAGTG
CGTGATTCCAATTTGAAGTGAACTTTTGATTGACGTCAATCTGGATCTTT
TTTCTAATCAACTCGAATTAACGTTACATCATAAACAGCCAATCAGATTC
GTAGAAAGTCTCTATAAAACTGACGGGAAATATCAAATGAGAAAAAATAA
AATAATTATATGTAATAACCTATAATTAGCTATAATTAGCTATGTTCGCT
ATCTTGGATATTTGGTAGAGACTTTCTACGAATCTGATTGGCTGTTTATC
ATGTAACGTTAATTCGAGTCCAGATTGACGTCAATCAAAACTTCATTTCA
AATTGGAATCACGCACTTCTTATCGTTCAATGTTTTAATTACATCAACTT
CGACGACGATTCCTTCATAACATAACAAGAAGAGAGTGAGAGTTGTTTAT
GGAAAAAGATTGTGCTACTTCGATCGTGTCGACAAACGANCGATGAAGAC
ATATCCGACGAGCTGAACGCTTACACAGAATTTGAAATAACAGTACAGAA
AACCATTTCACGATTTAAACGATTAGAACGCAGTTTACACTCGAACGTCG
CAAGAAGAAACAGTTACCAAACGTTGTTGCCGGGGGAGTGCGAATAATTG
ATTAGTCACGTGACGAGAACATATAAAAGAAGCGCGTTCATTGTACAATA
GAATTTGTTGTTAGCTTATTTTTAAAGTTCGGGCTGCGTTTAANGAAGCG
CGTTCATTGTACAATAGAATTTGTTGTTAGCTTATTTTTAAAGTTCGGGC
TGCGTTTAAACCAACTGGCATTTGTAATTGCTTGCAGTATTCTTTTGAAT
TCTATTGTTCCGCGCTATTGTTCGGTTTGTCAACTGCCTAATGATGTCAG
CGTCTTGGCATTTCGTTGGCATTTGAAATGCCATTTTGAGCGAAGGAATC
CCCTTTTCTGTCATTTCAAATCAAACAAAGGAACCAAGACAAAGAGAAAA
AATGACATTTTTTATTTTTTAAAAGCGTGTGCACGTTTTCTATTCAGTTT
TTTCTATACGTTTTAAAATTTGCAAGTTTTGCCGTAGCCTTAGCCTACGG
CAACAAAGTTGAATCTTAAAACATTGAACGATAAGAAATGCGTGATTCCA
ATTTGAAGTGAACTTTTGATTGACGTCAATCTGGATCTTTTTTCTAATCA
ACTCGAATTAACGTTACATCATAAACAGCCAATCAGATTCGTAGAAAGTC
TCTATAAAACTGACGGGAAATATCAAATGAGAAAAAATAAAATAATTATA
TGTAATAACCTATAATTAGCTATAATTAGCTATGTTCGCTATCTTGGATT
TCTGGTAGAGACTTTCTACGAATCTGATTGGCTGTTTATCATGTAACGTT
AATTCGAGTTGATAGAAAAAAGATCCAGATTGACGTCAATCAAAAGTTCA
TTTCAAATTGGAATCACGCACTTCTTATCGTTCAATGTTTTAATTACATC
AATTTAAAAAAAGTTCGACGACGATTCCTTCATAATATAACAAGAAGAGA
GTGAGAGTTGTTTATGGAAAAAGATTGTGCTACTTCGATCGTGTCGACAA
ACGAGAAAATTTCAATAAAGAAACGTCTTTCCCTTAGTACCAGAGCTGCA
AACATGGTATTCTCATAAGCATTATTTTTCTTTGGCTTGACTACCGGAAA
AGACAAAACAACATCATTTGCTTAGCCCTTAATTTTCTTTTCCGCGCTAT
TTTTTCTCTTGTATAATTTGCTTGCAGCAGAGCTACAGCAGCCAATTTCT
CTCTTGTCAACATGATTTAACTCTTTGCTATTTACATATTTGACTGTTTT
TACACTGTTTTTCTAACATAACATTTTCGCAGGTATCAGGGAATCCTTTC
TGACAGTAACATTACACAAATGGAGACACATCCTGTCTATCTCTGCGGAT
TATAGACAATAGAAAGCACATGAAAATTGTGATTAAAAGTATTCTCTTGT
GAACAAATGCCAAATTACAAATGCCAGTTGGTCTAAACGCAGCGGAAAAC
ATCTTTTGAGTATACAGTCCTCTTATTTGTTTGAAAAGAATCACATTTGC
CAAAACTAAATCCCTAGCTATTCACCTAAAGTCCACGTTTAATTCTTTAC
ACTTTACACATTTTCATCAACCCACAACCCTGCTTGTGGTCAAGTCAACT
AGGTTCGAATCCTAGCTGGGGTGTTGAAGTGTTATCATTAACTCAAAGTA
AAAATAATTTCCATATAGCAAAAACCAATACCACGCAATTTTTGTCTTTT
CATCCACATAAGCCGTTGTTGTTGCCTTTCCAGACCGATGCATCTGCCAC
AATACCATATAGATGTCAATATTCATCGAAAAGGAACATTTGTCATCTAT
TCATCAGCTTCACCATTTTCAAGTGACACCCTTTCATTATGCATATGCAT
AAAATATAACACGATGAAGGTGTATCTTTCTCTGTTCATGTGTTTTGTCA
TTACCTTGTACTTTGAAAACCACGAAAAGAGCTGCTCACAAACTTCCGTA
TTGACCTGAATTAAATTAAAAAATAATTTGAATTCATTTATGGTTTAACA
CCCTTTCTATATTAAAGTATAATAGAAAGCCTAACGAAATATTGTAACTG
ATTAAATGTTGGTAATCTATTATTTTTAACGAAATAACCTACGTTATCCA
GTGTTTCACTGTGATCAGGGTTACAATTTGCACGACACCATAAGTCGACG
TGATTTTTGAAATGGAATCTATCAGATCGATAGTCCATGTCTGCCAGCCT
TTCTGATACGTTCCTCCGGTTCATTGCGTATCTTTTGAGATGGCATGCGT
CATCATATACAATGCATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004768-exon-sc0000048-1575043694:3215..5020 | TCONS_00004768-exon-sc0000048-1575043694:3215..5020 | Clytia hemisphaerica | exon |
| TCONS_00004768-exon-sc0000048-1575043694:2000..2537 | TCONS_00004768-exon-sc0000048-1575043694:2000..2537 | Clytia hemisphaerica | exon |
| TCONS_00004768-exon-sc0000048-1510915933:3215..5020 | TCONS_00004768-exon-sc0000048-1510915933:3215..5020 | Clytia hemisphaerica | exon |
| TCONS_00004768-exon-sc0000048-1510915933:2000..2537 | TCONS_00004768-exon-sc0000048-1510915933:2000..2537 | Clytia hemisphaerica | exon |
| TCONS_00004768-exon-sc0000048-1491911889:3215..5020 | TCONS_00004768-exon-sc0000048-1491911889:3215..5020 | Clytia hemisphaerica | exon |
| TCONS_00004768-exon-sc0000048-1491911889:2000..2537 | TCONS_00004768-exon-sc0000048-1491911889:2000..2537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:2000..5020 - |
Blast
The following BLAST results are available for this feature:
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