TCONS_00004761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004761
Unique NameTCONS_00004761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004761 ID=TCONS_00004761|Name=TCONS_00004761|organism=Clytia hemisphaerica|type=transcript|length=2803bp
GAAATTAatactaaattgaaagaaacttgaatttggcgagaatttatttt
ggcaaatgacctataaatttaaatttagcggaaagaaattttggcgaaat
tttcaggcaattcgccaaattcaccaaaattctttcccttaaggtagatt
CCCTAAGACGACCTTTTGGTTTGCTTTTTATTAAGCTCCGAAGTTCATCA
AAAAGTTAATCTTCTTCTTTTATAGTGAAAGACGATAAACGAATATGTTC
GCACCAGCTGCCGTTTTCATTGGTCCACGAACTTGGGGGCCTCTTAGCAG
CCTCGCACTCGAAGAATTATAAGCACCTCGCGGACAAGCTTGGCTATAAA
TATTCATTTATTAAAAGACTAGAATCCTCGGAAGATCCTGTTGAGGCTCT
TCTTGATGATTATGTAACGGGGGAAAACCCCACTAAAGAACAATTATATT
CTTCACTTTTGGCGATTGGTCGGCCGGACGCTGCAAAGGTGGTTATGGAT
GAGCTCTAAAATCATCAGAAAATGAACCGAATAGTTTTATGTTGAATAAC
CAGGGTGTCGCGAATCAAGTTGCATTCGTATGTCATTTTTTGGAATCGAT
TCCTGTTTTGGTTTGAATATTGAGATCTTTGACAATCAACATGATTATTA
TATGATACCGATCATAAATTGGATGCGAATGAGATTGTTTTCGAAACACC
TTTGGCTATGTCATGCTTAAATAATGAAGCTTTTAGAGTTCGTCCATGGC
TTTCTTTGTGGTTGTTCAATATGTCAGTAAAAAGAAAGATTGAGGCACCA
TCTccaatagtttataacaaattATATACTTTAAGTGAATTTTAGtgaga
aaaaaaacacgaaaaaattacattcaaattttttgatgaaaaatggccGA
ATTTGTAATTCACGGGTTCTAATTTAATTAATAATTTAGGTTTCTAATAT
ATAGTCTTTGgtatgaaaaatatataaaaagattTGCGACAAAATTGTAC
TGTATTTGTAACTAACGCGATGAAGATGAGATGTTATCAGGTTTAGGctt
aaaattgaaaagtttgacAGATTTATTTGGGGCTAATAATTTGGTTCATT
TTTGGAAATGGTGTCTTCAAAAATAATAAACTTAAacgtcattttttttt
aaaaaagagaaatttatccaaattttatattataataGTATCTACATATT
AGTGCATAAGAAAATTAActtattattcaattttttttcccatATTTTCT
GGCTTTTTTTTATACACGAAggaattttagaaaacattatAGTAACGTTA
CTACGAAGGACAAACATCCtctttttttgtatgaaaacttTATATTAGTA
TTTATTAAATAATGTGCCTGGCTAGTCCTTTTTAATCCCAAGGTATTTTA
CGTCTGAATCCAGATATATTTTGTGTCCTTTATTGAAATAACTCTTACTC
AAAACTAATTTGACCATTGATAAAATGAAATGACACAGTGCCATTTTAAT
GTAAACTACCTTGGAATAGAGACTTCTCtctaatgtttttctttttgctt
tttacCAAAACTAAACCTATATTCTTAACATGAACCTATATTTGTGGATT
GGGGCCTGCCCAAAAATTGTGAAATGTCATCTAGGACCTCTTGAAATCTG
ATACAAAGGATGATTTTCAAGTATGCAACAATAACAACCTTTTAAATAGG
TTCTTGTTATGGCTAAGGCTAAATTTTTGGCACCATGTTAATCCTTTCCA
TCAAAAACTTTGCTCGAAACTTTTTAACCCTTCATTTTTGCAACCTCTTC
TTTTCTACCGTTTTTctactctttttttttcttagatctttttttttcaa
ctttagtTTTTATGCCAGTCGGAATAAAGATGACAGAGTTATCTTATGTT
CTGCTTTAAATTTTGTTtgtcttgtttgtttttttgtttttttgtaaatt
taacttatttaactttcgttttttgTAGTAAGCATTTTTTATTACGTAAT
GATGTTATCTTACAAACGAAATCAGCCCCGGGTGTTTTGCTTGAAGTGTT
ACGTCATTGATATAATCCCTGTTACCATACATACAGAaaacgggggtccc
cgaacgGTCCCCTGGACCTGGACCGGGAATAATGGCATGCTTTACATATC
TAAATTGAAGTGTTCTTAGACATGATAACTAGATAATTCCCTAGTTTTAA
GGTTGacctaaaaataattattcatttGTCAGAAATTTTAACGAGCCTCT
CTTATAGACCCGAAAATTTCCCTGTATTCTTTTGTAAAATAATCGTCTTT
GTTATTCTGTTTGGAAAATTTGTTATTTAGCNTAGTAAGCATTTTTTATT
ACGTAATGATGTAATCTTACAAACGAAATCAGCCCCGGGTGTTTTGCTTG
AAGTGTTACGTCATTGATATAATCCCTGTTACCATACATACAGAaaacgg
gggtccccgaacgGTCCCCTGGACCTGGACCGGGAATAATGGCATGCTTT
ACATATCTAAATTGAAGTGTTCTTAGACATGATAACTAGATAATTCCCTA
GTTTTAAGGTTGacctaaaaataattattcatttGTCAGAAATTTTAACG
AGCCTCTCTTATAGACCCGAAAATTTCCCTGTATTCTTTTGTAAAATAAT
CGTCTTTGTTATTCTGTCTGGAAAATTTGTTATTTagcttttaaaattta
ttaattatATTAGATTATTTCATGACTATTGTGAGATTTGAAACAGTTTT
CCTGAAATCTTTTATGCAAATATCACCCACGAGtatttgaatgaatattt
ttg
Run BLAST on NCBI

transcript from alignment at sc0000048:527513..530315+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004761 ID=TCONS_00004761|Name=TCONS_00004761|organism=Clytia hemisphaerica|type=transcript|length=2803bp|location=Sequence derived from alignment at sc0000048:527513..530315+ (Clytia hemisphaerica)
GAAATTAatactaaattgaaagaaacttgaatttggcgagaatttatttt
ggcaaatgacctataaatttaaatttagcggaaagaaattttggcgaaat
tttcaggcaattcgccaaattcaccaaaattctttcccttaaggtagatt
CCCTAAGACGACCTTTTGGTTTGCTTTTTATTAAGCTCCGAAGTTCATCA
AAAAGTTAATCTTCTTCTTTTATAGTGAAAGACGATAAACGAATATGTTC
GCACCAGCTGCCGTTTTCATTGGTCCACGAACTTGGGGGCCTCTTAGCAG
CCTCGCACTCGAAGAATTATAAGCACCTCGCGGACAAGCTTGGCTATAAA
TATTCATTTATTAAAAGACTAGAATCCTCGGAAGATCCTGTTGAGGCTCT
TCTTGATGATTATGTAACGGGGGAAAACCCCACTAAAGAACAATTATATT
CTTCACTTTTGGCGATTGGTCGGCCGGACGCTGCAAAGGTGGTTATGGAT
GAGCTCTAAAATCATCAGAAAATGAACCGAATAGTTTTATGTTGAATAAC
CAGGGTGTCGCGAATCAAGTTGCATTCGTATGTCATTTTTTGGAATCGAT
TCCTGTTTTGGTTTGAATATTGAGATCTTTGACAATCAACATGATTATTA
TATGATACCGATCATAAATTGGATGCGAATGAGATTGTTTTCGAAACACC
TTTGGCTATGTCATGCTTAAATAATGAAGCTTTTAGAGTTCGTCCATGGC
TTTCTTTGTGGTTGTTCAATATGTCAGTAAAAAGAAAGATTGAGGCACCA
TCTccaatagtttataacaaattATATACTTTAAGTGAATTTTAGtgaga
aaaaaaacacgaaaaaattacattcaaattttttgatgaaaaatggccGA
ATTTGTAATTCACGGGTTCTAATTTAATTAATAATTTAGGTTTCTAATAT
ATAGTCTTTGgtatgaaaaatatataaaaagattTGCGACAAAATTGTAC
TGTATTTGTAACTAACGCGATGAAGATGAGATGTTATCAGGTTTAGGctt
aaaattgaaaagtttgacAGATTTATTTGGGGCTAATAATTTGGTTCATT
TTTGGAAATGGTGTCTTCAAAAATAATAAACTTAAacgtcattttttttt
aaaaaagagaaatttatccaaattttatattataataGTATCTACATATT
AGTGCATAAGAAAATTAActtattattcaattttttttcccatATTTTCT
GGCTTTTTTTTATACACGAAggaattttagaaaacattatAGTAACGTTA
CTACGAAGGACAAACATCCtctttttttgtatgaaaacttTATATTAGTA
TTTATTAAATAATGTGCCTGGCTAGTCCTTTTTAATCCCAAGGTATTTTA
CGTCTGAATCCAGATATATTTTGTGTCCTTTATTGAAATAACTCTTACTC
AAAACTAATTTGACCATTGATAAAATGAAATGACACAGTGCCATTTTAAT
GTAAACTACCTTGGAATAGAGACTTCTCtctaatgtttttctttttgctt
tttacCAAAACTAAACCTATATTCTTAACATGAACCTATATTTGTGGATT
GGGGCCTGCCCAAAAATTGTGAAATGTCATCTAGGACCTCTTGAAATCTG
ATACAAAGGATGATTTTCAAGTATGCAACAATAACAACCTTTTAAATAGG
TTCTTGTTATGGCTAAGGCTAAATTTTTGGCACCATGTTAATCCTTTCCA
TCAAAAACTTTGCTCGAAACTTTTTAACCCTTCATTTTTGCAACCTCTTC
TTTTCTACCGTTTTTctactctttttttttcttagatctttttttttcaa
ctttagtTTTTATGCCAGTCGGAATAAAGATGACAGAGTTATCTTATGTT
CTGCTTTAAATTTTGTTtgtcttgtttgtttttttgtttttttgtaaatt
taacttatttaactttcgttttttgTAGTAAGCATTTTTTATTACGTAAT
GATGTTATCTTACAAACGAAATCAGCCCCGGGTGTTTTGCTTGAAGTGTT
ACGTCATTGATATAATCCCTGTTACCATACATACAGAaaacgggggtccc
cgaacgGTCCCCTGGACCTGGACCGGGAATAATGGCATGCTTTACATATC
TAAATTGAAGTGTTCTTAGACATGATAACTAGATAATTCCCTAGTTTTAA
GGTTGacctaaaaataattattcatttGTCAGAAATTTTAACGAGCCTCT
CTTATAGACCCGAAAATTTCCCTGTATTCTTTTGTAAAATAATCGTCTTT
GTTATTCTGTTTGGAAAATTTGTTATTTAGCNTAGTAAGCATTTTTTATT
ACGTAATGATGTAATCTTACAAACGAAATCAGCCCCGGGTGTTTTGCTTG
AAGTGTTACGTCATTGATATAATCCCTGTTACCATACATACAGAaaacgg
gggtccccgaacgGTCCCCTGGACCTGGACCGGGAATAATGGCATGCTTT
ACATATCTAAATTGAAGTGTTCTTAGACATGATAACTAGATAATTCCCTA
GTTTTAAGGTTGacctaaaaataattattcatttGTCAGAAATTTTAACG
AGCCTCTCTTATAGACCCGAAAATTTCCCTGTATTCTTTTGTAAAATAAT
CGTCTTTGTTATTCTGTCTGGAAAATTTGTTATTTagcttttaaaattta
ttaattatATTAGATTATTTCATGACTATTGTGAGATTTGAAACAGTTTT
CCTGAAATCTTTTATGCAAATATCACCCACGAGtatttgaatgaatattt
ttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002694XLOC_002694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004761-exon-sc0000048-1491911889:527513..530315TCONS_00004761-exon-sc0000048-1491911889:527513..530315Clytia hemisphaericaexon
TCONS_00004761-exon-sc0000048-1510915933:527513..530315TCONS_00004761-exon-sc0000048-1510915933:527513..530315Clytia hemisphaericaexon
TCONS_00004761-exon-sc0000048-1575043694:527513..530315TCONS_00004761-exon-sc0000048-1575043694:527513..530315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:527513..530315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0355931	0	0.0243423	0	0.0968962	0.0343074	0	0	0.0583783	0	0	0.0249751	0.0799782	0.0258253	0.0389533	0.02095	0.0509115	0.022185	0	0.0335783	0.0975665	0.38761	0	0.0422192	0	0	0.059082	0.1262	0.229199	0.312771
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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