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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004759 ID=TCONS_00004759|Name=TCONS_00004759|organism=Clytia hemisphaerica|type=transcript|length=4055bpRun BLAST on NCBI protein sequence of TCONS_00004759-protein >TCONS_00004759-protein ID=TCONS_00004759-protein|Name=TCONS_00004759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1186bp MADGKVEKISDEVQYVDLLRTSHVLSHAYVAPFLLIYAIFFPTWIFKFGFRun BLAST on NCBI transcript from alignment at sc0000048:459274..496404+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004759 ID=TCONS_00004759|Name=TCONS_00004759|organism=Clytia hemisphaerica|type=transcript|length=37131bp|location=Sequence derived from alignment at sc0000048:459274..496404+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000048:459274..496404+ >TCONS_00004759 ID=TCONS_00004759|Name=TCONS_00004759|organism=Clytia hemisphaerica|type=CDS|length=99708bp|location=Sequence derived from alignment at sc0000048:459274..496404+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004759 vs. Swiss-Prot (Human)
Match: AT131 (Manganese-transporting ATPase 13A1 OS=Homo sapiens GN=ATP13A1 PE=1 SV=2) HSP 1 Score: 1221.07 bits (3158), Expect = 0.000e+0 Identity = 644/1145 (56.24%), Postives = 830/1145 (72.49%), Query Frame = 1
Query: 373 WIFKFGFFENFEVGCIILAVIGVVQVLVCLSCHWSVHLCARFTCSKVKDVTDANVVKAVPTLNNGYPEIVRLEHSEDDTGKKISSFKFQKIQYFYDYEEKKRFEPVTFPINEQFSFYQNSKGFQEEDEIRIVQKKYSLNRIEMDVPEFMELFKERATAPFFVFQVFCVSLWCLDEYWYYSLFTLFMLVMFEATLVHQQQRNLKEVRNMGSKAYQIQVYRYRKWRPISTDELLPGDICSIVRSKSDVMIPCDMLLLRGMCIVDESMLTGEAVPQMKEAIEALPGNDVLDVDEHRKLHLLNGGTKVVNHTPPPKTSAGLKSPDNGCVAYVLKTGFSTSQGKLLKTILYGVKRVTANNLETFMXXXXXXXXXXXXSGYVWIKGSEDPKRNKYKLFLECTLILTSVVPPELPIELSLAVNSSLIALSKLGLFCTEPFRIPFAGKVDVCCFDKTGTLTSDDLVVEGVAGIKGDHKIQPLSETPNETTRVLASCHSLTFVDE-QLVGDPMEKAVVKAMDWSVGKGDVCVAKKGLRQSVKILHRYHFTSVLKRMSVIASVQSASDASGTNHHIVATKGAPETLRKMFIEVPEFYDELHKELSCNGGRIMALGHKDLSGDISPREVRDMLREDAERDLIFDGFVVLSCPLKHDSMSTIKEIKNASHYTVMITGDNPLTACHVANTLKMNEKKLLVLMKXXXXXXXXXXXXXXXXXWSWKTVDEKEEFQLDE-NVKEIVKDYRFCLSGEGLSYLQSTVELKKYLQKILVDCRVFARVDPKQKEWIIQEYKSLGFITLMCGDGTNDVGALKHAHVGVALLPGTXXXXXXXXXXXXXXXXXXXXXXXXQKTRGPPXXXXXXXXXXXXMRAVTRGDHDTKTNLEKQQAKLQEMLDEIDKDQANIVKLGDASIASPFTSRYCTPAAICHAIKQGRCTLVTTLQMFKILALNALILAYSQSVLYLDGIKFSDSQATLQGILLAGCFLFISRSKPLKTLSKERPLPNIFNLYTILTVILQFAIHFSSLLYVVGEAYLIAP-KTEKFVDLEKKFEPSLINSVVYILSMSMQVNTFAVNYRGRPFMESLRENKPLFYSIFISMGALVSLLMGLIPDVSKQFEIVDLPTQFQAMFCQVVIADFIGCWILDRMLRFLFGTARLK 3798
W + + + E ++LA I + L LS HWSVH TC+ D + A VK VPT NNG E+V L +E + G ++ SF+FQKI+Y YD EKK+F PV FP+ FS+YQ+++GFQE+ EIR +KK+ N+ EM VP+F ELFKERATAPFFVFQVFCV LWCLDEYWYYS+FTL MLV FEA+LV QQ RN+ E+R MG+K + IQVYR RKWRPI++DE++PGDI SI RS + ++PCD+LLLRG CIVDE+MLTGE+VPQMKE IE L + VLD+ +LH++ GGTKVV H PP K + GLK D+GCVAYVL+TGF+TSQGKLL+TIL+GVKRVTANNLETF+FILFLL+FAIAA+ YVWI+G++DP RN+YKLFLECTLILTSVVPPELPIELSLAVN+SLIAL+KL ++CTEPFRIPFAGKV+VCCFDKTGTLTSD LVV GVAG++ ++ P+S P ET R LASCHSL +D+ LVGDP+EKA++ A+DW++ K + + Q +KI R+HF S LKRMSV+AS + S +I A KGAPETL MF + P Y +H E+S G R++ALG+K+L G ++ ++ R++ RE E L F GF+V+SCPLK DS + I+EI+NASH VMITGDNPLTACHVA L EK ++++ SE W+++D L + K + +Y CL+G+GL++LQ+T + L +++ +VFARV PKQKE++I K LG++TLMCGDGTNDVGALKHA VGVALL PER+ R + + P+ ++ + ++ G ++ Q+ +L ++L +++ + IVKLGDASIA+PFTS+ + ICH IKQGRCTLVTTLQMFKILALNALILAYSQSVLYL+G+KFSD QATLQG+LLAGCFLFISRSKPLKTLS+ERPLPNIFNLYTILTV+LQF +HF SL+Y+ EA +P K E+FVDL K+FEPSL+NS VYI++M+MQ+ TFA+NY+G PFMESL ENKPL +S+ +S+ A++ LL+G PD + QF +VD+P +F+ + QV++ DF + DR+L+F GT +LK
Sbjct: 87 WGWGSSWVQIPEAALLVLATICLAHALTVLSGHWSVHAHCALTCTPEYDPSKATFVKVVPTPNNGSTELVALHRNEGEDGLEVLSFEFQKIKYSYDALEKKQFLPVAFPVGNAFSYYQSNRGFQEDSEIRAAEKKFGSNKAEMVVPDFSELFKERATAPFFVFQVFCVGLWCLDEYWYYSVFTLSMLVAFEASLVQQQMRNMSEIRKMGNKPHMIQVYRSRKWRPIASDEIVPGDIVSIGRSPQENLVPCDVLLLRGRCIVDEAMLTGESVPQMKEPIEDLSPDRVLDLQADSRLHVIFGGTKVVQHIPPQKATTGLKPVDSGCVAYVLRTGFNTSQGKLLRTILFGVKRVTANNLETFIFILFLLVFAIAAAAYVWIEGTKDPSRNRYKLFLECTLILTSVVPPELPIELSLAVNTSLIALAKLYMYCTEPFRIPFAGKVEVCCFDKTGTLTSDSLVVRGVAGLRDGKEVTPVSSIPVETHRALASCHSLMQLDDGTLVGDPLEKAMLTAVDWTLTKDEKVFPRSIKTQGLKIHQRFHFASALKRMSVLASYEKL--GSTDLCYIAAVKGAPETLHSMFSQCPPDYHHIHTEISREGARVLALGYKEL-GHLTHQQAREVKREALECSLKFVGFIVVSCPLKADSKAVIREIQNASHRVVMITGDNPLTACHVAQELHFIEKAHTLILQPPSEKGRQC---------EWRSIDGSIVLPLARGSPKALALEYALCLTGDGLAHLQATD--PQQLLRLIPHVQVFARVAPKQKEFVITSLKELGYVTLMCGDGTNDVGALKHADVGVALLANAPERVVERRRRPRDS----------------PTLSNSGIRATSRTAKQRSGLPPSEEQPTSQRDRLSQVLRDLEDESTPIVKLGDASIAAPFTSKLSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSVLYLEGVKFSDFQATLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFFVHFLSLVYLYREAQARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYKGPPFMESLPENKPLVWSLAVSLLAIIGLLLGSSPDFNSQFGLVDIPVEFKLVIAQVLLLDFCLALLADRVLQFFLGTPKLK 1201 The following BLAST results are available for this feature:
BLAST of TCONS_00004759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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