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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004758 ID=TCONS_00004758|Name=TCONS_00004758|organism=Clytia hemisphaerica|type=transcript|length=2237bp
ATTAAAAACAATTATGATTATGAAAATGAACCATGATGGTATTATACCAA
TATCATGTGATGCATGCAGAACCAAAATTATGGagaaacattacatcatg
gttggcgccaaaacgaggctacaTTATAAATGTTTGAGATGTTCTTCATG
TCAATGTTCTTTGTCAACTGCTCAAACGTGTTAtgaaaaaatggagaaaa
tcttCTGCAAGAACTGCTACCTGATaatatGGTCTAAAACAAAATGTCAA
CGTTGTCAACGCGGAATCAGCAATACAGATCTGGTAATGCAGGCGCACAA
ATGTTATTACCATGTCGAATGTTTCGCGTGTTATTCATGTGGAATTCATC
TAAAGAAAGGGCAACGTTTTGGTGTCAAAGATCAAAAAGTGTATTGTGAA
CTACATTATAAACAAATTCGGCTGCCGGCTACTTTGCCAGTCAATGATAC
GAATAATAATATTGGAACTCGAGAAAAACTTGATCGTAGATACTCAATGC
CATCACTATCACAACATTTCAATGTCAAAGATGAACCATGCCGAAGTTTA
TCACCTCTAACACAAACACCTTTCCCACAACATAaacaacaacatcaaca
acaacaacaacaaattttgGACATAAGTAATCACAGGTCACCTATACTTA
GACAATTAAGTGATCCATCAAATATTCATTCATCTGATAACAAAACAACT
GAATTAAAACCTATATCATCAAGTTTAAATTTCTCAGATCACCTCCCAGA
GCCTTTGGTGACAAACTTGTCACCAAGAACTTTTACATCAAAAAAGATTG
ACAACCAACTAAAACCTTTATCATCCAGTTTAAATTTCTCAGATCACTTT
CCAGATCCTTTAGTAACAAACTCATCACCGAAAACTTTTACACCAACCAA
GGAGATTGACAACAAACTAAATGATCCAGCCATAAACATACAACAGAATC
AATGGAAAGTAAACAAACCTCAAAGCTTTACTGACACTTATACGAGCTTT
CCATTCAACTTTCCCAATACTTCTGGACATCCAAGAAAACATCCAAATAG
CAGTCACAGTGGATCAGCAGATTCCTCTTTTTCGTTGAAAAGACATCAAT
CGAGTGAACCATTAGTTTCACCAGtactacaaaagaaatttttaccagAG
CCTTCGGTAAAATTATCAGAATCACAAACACTTCAATCTCCAATGAGTTC
AATTTCAAGTTACTTTCAAAATCTTGGTAAGAATAGTGCGCCAGACTGCA
AACCCTTTATAAGCTTAGAAAAACACAAGGAAAACAGTAATAATGACATG
AAAACATTTACAAATTTATTCACCGAGAAAAACGAAAGAGAAACGAAATC
ATTTATTAATTTAGACGTCAAGAAACAAATAGCATCATCAGATATTGAAA
TAACAACAAATCCATCATCCAGTAAAACTAGCCCTGTAGATATCCATTCA
TCCCGTAAACCGCCACCTGCATACTCCGATTTTCAACCGTTAACCTTTTC
AGACAATGAGCCAGAAAATGATAAATTTCAGGACCAGACTGAGTCACAGG
ATACAAAAGGCTCAGATTCTAATGATTTTCCAACGATTAAAACTGGATCG
AATAGTTCTAGCAGTGATGAAGATGGAAGTCAAGAACCTAAGAAAGCGAC
CAAGGCTACATCTACCAAATCCAGGAAAAGCCGATCAAAGGATAACAAAC
CAAAACGTCAACGGACTTCTTTCAAAGTTTATCAATTAGTGGCTATGAAA
GAATTATTTGATTGTGATAAAAATCCTGATTCAATTAAGTTGACACTACT
GGCCGACAAAATTGATCTCCCGAAACGTGTATTACAAGTATGGTTTCAAA
ATGCACGAGCTAAACATCgaaagggtcaaaatatttttagtgaTACAATT
GAGAAAATGTTATTACCAGAAAATGTTGGGAAGGCGTTAGAGAAAGAAAG
TCAGGGAGATGAAAACGAGGACTGTGTTGAAGATCAATCTCTTGAATTTG
ATGATGAAACTAAAGATCCAACTGATGACGTAAGCTGACGTTagcaattt
tattattttgatattgtCAACTCTGGAATAAAATAGTAAGAAATTATTTG
TATTGATGTTAtagtttttgtatatttttacacattttttttaaatcaaa
atgtttgaaaatgaaattttaagtaTCAATGTCAAAATTTCTGTAATACA
TGCATCAATGTGGCTGATTTTGCGAATCAGTCTAAAT Run BLAST on NCBI protein sequence of TCONS_00004758-protein >TCONS_00004758-protein ID=TCONS_00004758-protein|Name=TCONS_00004758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=678bp
LKTIMIMKMNHDGIIPISCDACRTKIMEKHYIMVGAKTRLHYKCLRCSSC
QCSLSTAQTCYEKMEKIFCKNCYLIIWSKTKCQRCQRGISNTDLVMQAHK
CYYHVECFACYSCGIHLKKGQRFGVKDQKVYCELHYKQIRLPATLPVNDT
NNNIGTREKLDRRYSMPSLSQHFNVKDEPCRSLSPLTQTPFPQHKQQHQQ
QQQQILDISNHRSPILRQLSDPSNIHSSDNKTTELKPISSSLNFSDHLPE
PLVTNLSPRTFTSKKIDNQLKPLSSSLNFSDHFPDPLVTNSSPKTFTPTK
EIDNKLNDPAINIQQNQWKVNKPQSFTDTYTSFPFNFPNTSGHPRKHPNS
SHSGSADSSFSLKRHQSSEPLVSPVLQKKFLPEPSVKLSESQTLQSPMSS
ISSYFQNLGKNSAPDCKPFISLEKHKENSNNDMKTFTNLFTEKNERETKS
FINLDVKKQIASSDIEITTNPSSSKTSPVDIHSSRKPPPAYSDFQPLTFS
DNEPENDKFQDQTESQDTKGSDSNDFPTIKTGSNSSSSDEDGSQEPKKAT
KATSTKSRKSRSKDNKPKRQRTSFKVYQLVAMKELFDCDKNPDSIKLTLL
ADKIDLPKRVLQVWFQNARAKHRKGQNIFSDTIEKMLLPENVGKALEKES
QGDENEDCVEDQSLEFDDETKDPTDDVS Run BLAST on NCBI transcript from alignment at sc0000048:423533..429891+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004758 ID=TCONS_00004758|Name=TCONS_00004758|organism=Clytia hemisphaerica|type=transcript|length=6359bp|location=Sequence derived from alignment at sc0000048:423533..429891+ (Clytia hemisphaerica)
ATTAAAAACAATTATGATTATGAAAATGAACCATGATGGTATTATACCAA
TATCATGTGATGCATGCAGAACCAAAATTATGGagaaacattacatcatg
gttggcgccaaaacgaggctacaTTATAAATGTTTGAGATGTTCTTCATG
TCAATGTTCTTTGTCAACTGCTCAAACGTGTTAtgaaaaaatggagaaaa
tcttCTGCAAGAACTGCTACCTGATGTAAGActatcttatttttattttt
ctgatttttattaTGATTCTGGAAAGGTTTGGATAGTAAGTTTTTAGTGA
AGGGACATAAAGGTAGTTAAATGTAAACATTATtcaaaccacgtgtcatt
aaagagaacaatttaaaatcacgtgtccaaaacaaacttgtaaaataatt
gaaacagtcaaaatcagccatatttgtttttattttttattttgacatgt
gacatttgttttgattttgtatcccactgcatacggtttgtttacaaatt
tcgtcagtacttttatgccCATTTAAGCGCAACCTTTGTTGGATAAAAAG
TTACCACCCTTCAGAAGTAAGCCTAAAAATGACCTATTTCACCGTATTTC
ACAGTactataactttttatttgagaaaGATACTAAAATTCTGAGCacca
tatttgaaatcagcaaagCTCGAAAATGCTCAAAAGTCTTTATTGTGATG
AGCTTTTTTAAACAGAAGAAGCTTTAttcacttttcttttccattttgga
aacatctttccaacggtgtctAGTTTTTTAATAAAGCAAAGGTACACACT
GTGAAATTGTCAAAAAGATCACTTGTCCACATCATTTTGAGGCAGACTTG
AGAACTTTGCTGGCAAAATAGCCGTATAGATGTAATCAGGAGGCTTCAAA
TGAAAATGAGTACCTTTATACCAAAATGAAGATAAAACTAAAAGTAATAC
CttgttcaaaagattttttttaagtgCATGATTTTAagacaaattcaaaa
ttttcaaaatgaagatgaaaaaaatgaagactttttctacttaaccaaaa
ttttttagatttgtACTTTTCTGAAACTTTGAACTTCGCTGATTATTTTC
ATGCCTTTagattttttatatctttcttggatcaaaagttacaacCCTCC
AAAATGGCTAGAAATAAATAGTTAAAATTGGGCAAAATTGGGCAAAATGG
ACCCATTTCGATGGAATAGAATAAATAAATTGTCAAAAgcttgtcaaaat
attttttccgcaTTAATTTAGAGGATGcattaaattagagaaatgaCTGC
AATATCATTATATTTTAATGAAGGAAAAAATGATGGTCTTTGAGATTGCG
GAATTAATGATCCAGGAAAAAATTTGTAAAGATTCAAccaaaatgagtga
aaaattataaaatcattAAGGAAAAAGAATGCGgaatgtaaatttgaatt
ttcattaaGGAAAATTTATACGACCCGGAACATGGATGAATTGTTCACGT
TCAAGAAGACacggaaaatattttcataattccTTAAacatcgagaaaaa
aaacaatttagagcaaaataattAGAATGAAATTGGGCATTTTCTTTTGG
CAAGCCGAGTATTCCTAAACCGTTGAAGTGAAAATTAGATCCGGTTTAAT
GGAAAATGTATCTGGAATTTatctgaagtaaaaaaaaattcaaaatatac
tCTTTCGAAAAAGTTGTATATTATTGTAACCGGTTATTCATCTGATGTTC
TCTATCATTCAATCTTCCTATAAATCGAATTTGTTTCTAGTCCCCGTCAA
TGAGAAACCCTCTTATATTAAGTATCTGATGATTATAAAATTATTCGATG
AAAACATTGCATCATATAGAAGAGTTTATGCAGgtttaagttttaaaaat
atctactattctttctttctttgattNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggggcagtgatTCT
TCTTCTAAAACAAATGCATGTTGAAGCTCTACTGTAGAAAACCTCaagga
aacttttttgagatttacaAAATCTGCTTTAAAGAAGCAAATAAGGACAT
CATTCAGGATCCTATGTGATATCTTAAAGCTTGCTTATGgcgttttttga
atattttttacttataACTATAAGTCATTTTTGTTTGGTGAGACTTAGCA
ATAAATTTAACGCTTGTCTGCTGGAAAAACTGTGACTCTCCGAAATTGAG
GAGGGAGTATACAAATATTACTTACGGGTGctggaaaattaattttcagg
caaaaagtttctttttgaataCAACTATGCTGGAAAGGTATTTTTCTGAG
TTGAGGAAACAATGTTGTTAGAAAAAAGACCTAATAATCGGACTCATTAT
TGTGGTAACCGCTAGGACATCCTATCGGTGGATTCGATACTTTCTATCTT
TTTGATTTGCAATTTGCGAATCGAGTGCGTggccctataaatattttgct
tgcatcTTCTGTGAGTCTTGAGTGACCTGCCTCGATCGTTTCGTAACTTT
TATTCATATACACTAGtgcaatgtttttttatttagaatatGGTCTAAAA
CAAAATGTCAACGTTGTCAACGCGGAATCAGCAATACAGATCTGGTAATG
CAGGCGCACAAATGTTATTACCATGTCGAATGTTTCGCGTGTTATTCATG
TGGAATTCATCTAAAGAAAGGGCAACGTTTTGGTGTCAAAGATCAAAAAG
TGTATTGTGAACTACATTATAAACAAATTCGGCTGCCGGCTACTTTGCCA
GTCAATGATACGAATAATAATATTGGAACTCGAGAAAAACTTGGTAAGAT
ATAGGCTATTTCAGACGAAATTTGTTCCCACTATGTTGAGGACGTCTTTT
ATTGGGAAAGGTGACCCCCCTCtagatttgttttcaatttttcaagattC
CTTTTCCTAGTCTTCTTTGGACCAAGGTTCTTTAAGGCTTTATAGGGATT
TGTTTGGTTTTTATGAGGTTGTATTGGATAGGGTTGACGGGATTTTCCTT
AGGTTTTGTTGGATTCTGAAGGTTTCCTTGGAGTTTTTTTTGGACGAAAC
CTTTTTAAGGTTTTCTTAGGATTCGTTAGGTTTTAATGAGGTTGTATTGG
ATTAGGTTGGACTGACGAGGTTTTCTGAAGCTTTAATTGATTGGGCTATT
TGAGGTTTTCTTGGAGTTTCGTTTGGTTTTATGAGACTGTACTGGGTGGG
ACTGACGAGGTTTCTTTTAGTCTCTGTTGTGTTGGTTTCAAAAGGTTTTA
TAAGAGTCTTCTTTGgaccaaaaaacttttttgggggCTTTCTTGAGATT
CGTTAGGTTTTTATGAGGTTGTATCTGGTGGGTTGACGGGATTTTCTTCA
GCTTTTATATTGAGTGTGTTTCTGGAGGTTTTCTTCGAGTCTTCTTTGGA
CCAAAACTTTTCAAGCCTTTATTAGGCTTTTATGTAACGAGGTTGTATTT
GGTGGGACTGGCGAGGTTTCCTTTAGTCTCTTTTGTGTTGGTTTCAAAAG
GTTTTATAAGAGTTTCCTTTGGACCAAACCTTTCGAAGGCTATAATTGGA
TTCGTTAGGTTTTTATTTATGAGGTTGTATTGGATGGGATTGGCGAGGTT
GTGTTGGTTTCTGGAGGTTTTCTTGGAGTCTTCTTTGGACCAAACCTTTT
AAAAGACTTTCTTAggatttatgatatttttgttaGGTTATTGCAGATGA
TGAGATTGGCGAGGTTTCCTTTAGTTTCTATGAGTGAGTTAAATGAGATC
TTCTTTGAGCCAGCCTATGTAAACCAAACCTTTTAGCATGGCGCATTTCA
TTAATTTTAAATTGTGTTCGGGATTTTAATCTTTTAGTCCTATAATATCC
AACTTAAACTCTAATGCCCTCTTGTGATTCTTAAGATAATTCTTAAAATC
AGAAGGTTTACTTTAGACTCGTGAGGGTCTCTAGAGTGCCTAGGTACCTG
GGTAGGTGCGTGATAACCCAGGTGGCGGGAATTTCGACTTCGGTTACTAA
TTGGACAAAATCTATAACGTTTCAGAGAAAAAGAGGTTCGGAGCCTTACA
AAGAGGTATCTTTTAGTGGCTTATAGAGAAAAAATTAGGAATAAGAATCC
ATCATAGCAGTTAGGGTGCACTATACTTTGAGATTGTCAAGATTATTTTT
TGAATGGGTTTTATTGAGTGAGAAAGTGTTCTCATGGTTAAGATTTTGAT
GTCTCTGTTTTTAAGCTTATCTTTCTAGGAAGAGCTTGTCATCGCAGTTC
ACTTCGGTTAACTTGTGTTGTTTTTGGGGTCAAATGAAATTTTCGGGAAC
GTCTTTGTAATTAGAATTAGTTTTGAAACTTTCTTTCACCTTTCTTCCCT
ATGCATGGTAAGTTTGACCGGGCTCTTTATCTCTTTATTTTCTTCTACAG
ATTTACGAATTTTAGGATATATTTTGACTGTTCTATAAGAAGAGTACAGT
TTAATTTTTCGGAACATactaaagaaattgaaaaataattctaatTTCTT
TCAGATCGTAGATACTCAATGCCATCACTATCACAACATTTCAATGTCAA
AGATGAACCATGCCGAAGTTTATCACCTCTAACACAAACACCTTTCCCAC
AACATAaacaacaacatcaacaacaacaacaacaaattttgGACATAAGT
AATCACAGGTCACCTATACTTAGACAATTAAGTGATCCATCAAATATTCA
TTCATCTGATAACAAAACAACTGAATTAAAACCTATATCATCAAGTTTAA
ATTTCTCAGATCACCTCCCAGAGCCTTTGGTGACAAACTTGTCACCAAGA
ACTTTTACATCAAAAAAGATTGACAACCAACTAAAACCTTTATCATCCAG
TTTAAATTTCTCAGATCACTTTCCAGATCCTTTAGTAACAAACTCATCAC
CGAAAACTTTTACACCAACCAAGGAGATTGACAACAAACTAAATGATCCA
GCCATAAACATACAACAGAATCAATGGAAAGTAAACAAACCTCAAAGCTT
TACTGACACTTATACGAGCTTTCCATTCAACTTTCCCAATACTTCTGGAC
ATCCAAGAAAACATCCAAATAGCAGTCACAGTGGATCAGCAGATTCCTCT
TTTTCGTTGAAAAGACATCAATCGAGTGAACCATTAGTTTCACCAGtact
acaaaagaaatttttaccagAGCCTTCGGTAAAATTATCAGAATCACAAA
CACTTCAATCTCCAATGAGTTCAATTTCAAGTTACTTTCAAAATCTTGGT
AAGAATAGTGCGCCAGACTGCAAACCCTTTATAAGCTTAGAAAAACACAA
GGAAAACAGTAATAATGACATGAAAACATTTACAAATTTATTCACCGAGA
AAAACGAAAGAGAAACGAAATCATTTATTAATTTAGACGTCAAGAAACAA
ATAGCATCATCAGATATTGAAATAACAACAAATCCATCATCCAGTAAAAC
TAGCCCTGTAGATATCCATTCATCCCGTAAACCGCCACCTGCATACTCCG
ATTTTCAACCGTTAACCTTTTCAGACAATGAGCCAGAAAATGATAAATTT
CAGGACCAGACTGAGTCACAGGATACAAAAGGCTCAGATTCTAATGATTT
TCCAACGATTAAAACTGGATCGAATAGTTCTAGCAGTGATGAAGATGGAA
GTCAAGAACCTAAGAAAGCGACCAAGGCTACATCTACCAAATCCAGGAAA
AGCCGATCAAAGGATAACAAACCAAAACGTCAACGGACTTCTTTCAAAGT
TTATCAATTAGTGGCTATGAAAGAATTATTTGATTGTGATAAAAATCCTG
ATTCAATTAAGTTGACACTACTGGCCGACAAAATTGATCTCCCGAAACGT
GTATTACAAGTATGGTTTCAAAATGCACGAGCTAAACATCgaaagggtca
aaatatttttagtgaTACAATTGAGAAAATGTTATTACCAGAAAATGTTG
GGAAGGCGTTAGAGAAAGAAAGTCAGGGAGATGAAAACGAGGACTGTGTT
GAAGATCAATCTCTTGAATTTGATGATGAAACTAAAGATCCAACTGATGA
CGTAAGCTGACGTTagcaattttattattttgatattgtCAACTCTGGAA
TAAAATAGTAAGAAATTATTTGTATTGATGTTAtagtttttgtatatttt
tacacattttttttaaatcaaaatgtttgaaaatgaaattttaagtaTCA
ATGTCAAAATTTCTGTAATACATGCATCAATGTGGCTGATTTTGCGAATC
AGTCTAAAT Coding sequence (CDS) from alignment at sc0000048:423533..429891+ >TCONS_00004758 ID=TCONS_00004758|Name=TCONS_00004758|organism=Clytia hemisphaerica|type=CDS|length=6111bp|location=Sequence derived from alignment at sc0000048:423533..429891+ (Clytia hemisphaerica)
TTAAAAACAATTATGATTATGAAAATGAACCATGATGGTATTATACCAAT
ATCATGTGATGCATGCAGAACCAAAATTATGGagaaacattacatcatgg
ttggcgccaaaacgaggctacaTTATAAATGTTTGAGATGTTCTTCATGT
CAATGTTCTTTGTCAACTGCTCAAACGTGTTAtgaaaaaatggagaaaat
cttCTGCAAGAACTGCTACCTGATaatatGGTCTAAAACAAAATGTCAAC
GTTGTCAACGCGGAATCAGCAATACAGATCTGGTAATGCAGGCGCACAAA
TGTTATTACCATGTCGAATGTTTCGCGTGTTATTCATGTGGAATTCATCT
AAAGAAAGGGCAACGTTTTGGTGTCAAAGATCAAAAAGTGTATTGTGAAC
TACATTATAAACAAATTCGGCTGCCGGCTACTTTGCCAGTCAATGATACG
AATAATAATATTGGAACTCGAGAAAAACTTGATCGTAGATACTCAATGCC
ATCACTATCACAACATTTCAATGTCAAAGATGAACCATGCCGAAGTTTAT
CACCTCTAACACAAACACCTTTCCCACAACATAaacaacaacatcaacaa
caacaacaacaaattttgGACATAAGTAATCACAGGTCACCTATACTTAG
ACAATTAAGTGATCCATCAAATATTCATTCATCTGATAACAAAACAACTG
AATTAAAACCTATATCATCAAGTTTAAATTTCTCAGATCACCTCCCAGAG
CCTTTGGTGACAAACTTGTCACCAAGAACTTTTACATCAAAAAAGATTGA
CAACCAACTAAAACCTTTATCATCCAGTTTAAATTTCTCAGATCACTTTC
CAGATCCTTTAGTAACAAACTCATCACCGAAAACTTTTACACCAACCAAG
GAGATTGACAACAAACTAAATGATCCAGCCATAAACATACAACAGAATCA
ATGGAAAGTAAACAAACCTCAAAGCTTTACTGACACTTATACGAGCTTTC
CATTCAACTTTCCCAATACTTCTGGACATCCAAGAAAACATCCAAATAGC
AGTCACAGTGGATCAGCAGATTCCTCTTTTTCGTTGAAAAGACATCAATC
GAGTGAACCATTAGTTTCACCAGtactacaaaagaaatttttaccagAGC
CTTCGGTAAAATTATCAGAATCACAAACACTTCAATCTCCAATGAGTTCA
ATTTCAAGTTACTTTCAAAATCTTGGTAAGAATAGTGCGCCAGACTGCAA
ACCCTTTATAAGCTTAGAAAAACACAAGGAAAACAGTAATAATGACATGA
AAACATTTACAAATTTATTCACCGAGAAAAACGAAAGAGAAACGAAATCA
TTTATTAATTTAGACGTCAAGAAACAAATAGCATCATCAGATATTGAAAT
AACAACAAATCCATCATCCAGTAAAACTAGCCCTGTAGATATCCATTCAT
CCCGTAAACCGCCACCTGCATACTCCGATTTTCAACCGTTAACCTTTTCA
GACAATGAGCCAGAAAATGATAAATTTCAGGACCAGACTGAGTCACAGGA
TACAAAAGGCTCAGATTCTAATGATTTTCCAACGATTAAAACTGGATCGA
ATAGTTCTAGCAGTGATGAAGATGGAAGTCAAGAACCTAAGAAAGCGACC
AAGGCTACATCTACCAAATCCAGGAAAAGCCGATCAAAGGATAACAAACC
AAAACGTCAACGGACTTCTTTCAAAGTTTATCAATTAGTGGCTATGAAAG
AATTATTTGATTGTGATAAAAATCCTGATTCAATTAAGTTGACACTACTG
GCCGACAAAATTGATCTCCCGAAACGTGTATTACAAGTATGGTTTCAAAA
TGCACGAGCTAAACATCgaaagggtcaaaatatttttagtgaTACAATTG
AGAAAATGTTATTACCAGAAAATGTTGGGAAGGCGTTAGAGAAAGAAAGT
CAGGGAGATGAAAACGAGGACTGTGTTGAAGATCAATCTCTTGAATTTGA
TGATGAAACTAAAGATCCAACTGATGACGTAAGCTGATTAAAAACAATTA
TGATTATGAAAATGAACCATGATGGTATTATACCAATATCATGTGATGCA
TGCAGAACCAAAATTATGGagaaacattacatcatggttggcgccaaaac
gaggctacaTTATAAATGTTTGAGATGTTCTTCATGTCAATGTTCTTTGT
CAACTGCTCAAACGTGTTAtgaaaaaatggagaaaatcttCTGCAAGAAC
TGCTACCTGATaatatGGTCTAAAACAAAATGTCAACGTTGTCAACGCGG
AATCAGCAATACAGATCTGGTAATGCAGGCGCACAAATGTTATTACCATG
TCGAATGTTTCGCGTGTTATTCATGTGGAATTCATCTAAAGAAAGGGCAA
CGTTTTGGTGTCAAAGATCAAAAAGTGTATTGTGAACTACATTATAAACA
AATTCGGCTGCCGGCTACTTTGCCAGTCAATGATACGAATAATAATATTG
GAACTCGAGAAAAACTTGATCGTAGATACTCAATGCCATCACTATCACAA
CATTTCAATGTCAAAGATGAACCATGCCGAAGTTTATCACCTCTAACACA
AACACCTTTCCCACAACATAaacaacaacatcaacaacaacaacaacaaa
ttttgGACATAAGTAATCACAGGTCACCTATACTTAGACAATTAAGTGAT
CCATCAAATATTCATTCATCTGATAACAAAACAACTGAATTAAAACCTAT
ATCATCAAGTTTAAATTTCTCAGATCACCTCCCAGAGCCTTTGGTGACAA
ACTTGTCACCAAGAACTTTTACATCAAAAAAGATTGACAACCAACTAAAA
CCTTTATCATCCAGTTTAAATTTCTCAGATCACTTTCCAGATCCTTTAGT
AACAAACTCATCACCGAAAACTTTTACACCAACCAAGGAGATTGACAACA
AACTAAATGATCCAGCCATAAACATACAACAGAATCAATGGAAAGTAAAC
AAACCTCAAAGCTTTACTGACACTTATACGAGCTTTCCATTCAACTTTCC
CAATACTTCTGGACATCCAAGAAAACATCCAAATAGCAGTCACAGTGGAT
CAGCAGATTCCTCTTTTTCGTTGAAAAGACATCAATCGAGTGAACCATTA
GTTTCACCAGtactacaaaagaaatttttaccagAGCCTTCGGTAAAATT
ATCAGAATCACAAACACTTCAATCTCCAATGAGTTCAATTTCAAGTTACT
TTCAAAATCTTGGTAAGAATAGTGCGCCAGACTGCAAACCCTTTATAAGC
TTAGAAAAACACAAGGAAAACAGTAATAATGACATGAAAACATTTACAAA
TTTATTCACCGAGAAAAACGAAAGAGAAACGAAATCATTTATTAATTTAG
ACGTCAAGAAACAAATAGCATCATCAGATATTGAAATAACAACAAATCCA
TCATCCAGTAAAACTAGCCCTGTAGATATCCATTCATCCCGTAAACCGCC
ACCTGCATACTCCGATTTTCAACCGTTAACCTTTTCAGACAATGAGCCAG
AAAATGATAAATTTCAGGACCAGACTGAGTCACAGGATACAAAAGGCTCA
GATTCTAATGATTTTCCAACGATTAAAACTGGATCGAATAGTTCTAGCAG
TGATGAAGATGGAAGTCAAGAACCTAAGAAAGCGACCAAGGCTACATCTA
CCAAATCCAGGAAAAGCCGATCAAAGGATAACAAACCAAAACGTCAACGG
ACTTCTTTCAAAGTTTATCAATTAGTGGCTATGAAAGAATTATTTGATTG
TGATAAAAATCCTGATTCAATTAAGTTGACACTACTGGCCGACAAAATTG
ATCTCCCGAAACGTGTATTACAAGTATGGTTTCAAAATGCACGAGCTAAA
CATCgaaagggtcaaaatatttttagtgaTACAATTGAGAAAATGTTATT
ACCAGAAAATGTTGGGAAGGCGTTAGAGAAAGAAAGTCAGGGAGATGAAA
ACGAGGACTGTGTTGAAGATCAATCTCTTGAATTTGATGATGAAACTAAA
GATCCAACTGATGACGTAAGCTGATTAAAAACAATTATGATTATGAAAAT
GAACCATGATGGTATTATACCAATATCATGTGATGCATGCAGAACCAAAA
TTATGGagaaacattacatcatggttggcgccaaaacgaggctacaTTAT
AAATGTTTGAGATGTTCTTCATGTCAATGTTCTTTGTCAACTGCTCAAAC
GTGTTAtgaaaaaatggagaaaatcttCTGCAAGAACTGCTACCTGATaa
tatGGTCTAAAACAAAATGTCAACGTTGTCAACGCGGAATCAGCAATACA
GATCTGGTAATGCAGGCGCACAAATGTTATTACCATGTCGAATGTTTCGC
GTGTTATTCATGTGGAATTCATCTAAAGAAAGGGCAACGTTTTGGTGTCA
AAGATCAAAAAGTGTATTGTGAACTACATTATAAACAAATTCGGCTGCCG
GCTACTTTGCCAGTCAATGATACGAATAATAATATTGGAACTCGAGAAAA
ACTTGATCGTAGATACTCAATGCCATCACTATCACAACATTTCAATGTCA
AAGATGAACCATGCCGAAGTTTATCACCTCTAACACAAACACCTTTCCCA
CAACATAaacaacaacatcaacaacaacaacaacaaattttgGACATAAG
TAATCACAGGTCACCTATACTTAGACAATTAAGTGATCCATCAAATATTC
ATTCATCTGATAACAAAACAACTGAATTAAAACCTATATCATCAAGTTTA
AATTTCTCAGATCACCTCCCAGAGCCTTTGGTGACAAACTTGTCACCAAG
AACTTTTACATCAAAAAAGATTGACAACCAACTAAAACCTTTATCATCCA
GTTTAAATTTCTCAGATCACTTTCCAGATCCTTTAGTAACAAACTCATCA
CCGAAAACTTTTACACCAACCAAGGAGATTGACAACAAACTAAATGATCC
AGCCATAAACATACAACAGAATCAATGGAAAGTAAACAAACCTCAAAGCT
TTACTGACACTTATACGAGCTTTCCATTCAACTTTCCCAATACTTCTGGA
CATCCAAGAAAACATCCAAATAGCAGTCACAGTGGATCAGCAGATTCCTC
TTTTTCGTTGAAAAGACATCAATCGAGTGAACCATTAGTTTCACCAGtac
tacaaaagaaatttttaccagAGCCTTCGGTAAAATTATCAGAATCACAA
ACACTTCAATCTCCAATGAGTTCAATTTCAAGTTACTTTCAAAATCTTGG
TAAGAATAGTGCGCCAGACTGCAAACCCTTTATAAGCTTAGAAAAACACA
AGGAAAACAGTAATAATGACATGAAAACATTTACAAATTTATTCACCGAG
AAAAACGAAAGAGAAACGAAATCATTTATTAATTTAGACGTCAAGAAACA
AATAGCATCATCAGATATTGAAATAACAACAAATCCATCATCCAGTAAAA
CTAGCCCTGTAGATATCCATTCATCCCGTAAACCGCCACCTGCATACTCC
GATTTTCAACCGTTAACCTTTTCAGACAATGAGCCAGAAAATGATAAATT
TCAGGACCAGACTGAGTCACAGGATACAAAAGGCTCAGATTCTAATGATT
TTCCAACGATTAAAACTGGATCGAATAGTTCTAGCAGTGATGAAGATGGA
AGTCAAGAACCTAAGAAAGCGACCAAGGCTACATCTACCAAATCCAGGAA
AAGCCGATCAAAGGATAACAAACCAAAACGTCAACGGACTTCTTTCAAAG
TTTATCAATTAGTGGCTATGAAAGAATTATTTGATTGTGATAAAAATCCT
GATTCAATTAAGTTGACACTACTGGCCGACAAAATTGATCTCCCGAAACG
TGTATTACAAGTATGGTTTCAAAATGCACGAGCTAAACATCgaaagggtc
aaaatatttttagtgaTACAATTGAGAAAATGTTATTACCAGAAAATGTT
GGGAAGGCGTTAGAGAAAGAAAGTCAGGGAGATGAAAACGAGGACTGTGT
TGAAGATCAATCTCTTGAATTTGATGATGAAACTAAAGATCCAACTGATG
ACGTAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004758-exon-sc0000048-1491911889:423533..423757 | TCONS_00004758-exon-sc0000048-1491911889:423533..423757 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1510915933:423533..423757 | TCONS_00004758-exon-sc0000048-1510915933:423533..423757 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1575043694:423533..423757 | TCONS_00004758-exon-sc0000048-1575043694:423533..423757 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1491911889:426169..426425 | TCONS_00004758-exon-sc0000048-1491911889:426169..426425 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1510915933:426169..426425 | TCONS_00004758-exon-sc0000048-1510915933:426169..426425 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1575043694:426169..426425 | TCONS_00004758-exon-sc0000048-1575043694:426169..426425 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1491911889:428137..429891 | TCONS_00004758-exon-sc0000048-1491911889:428137..429891 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1510915933:428137..429891 | TCONS_00004758-exon-sc0000048-1510915933:428137..429891 | Clytia hemisphaerica | exon |
| TCONS_00004758-exon-sc0000048-1575043694:428137..429891 | TCONS_00004758-exon-sc0000048-1575043694:428137..429891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:423533..429891 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00004758 vs. Swiss-Prot (Human)
Match: LHX2 (LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 5.561e-18 Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 2
Query: 56 CDACRTKIMEKHYIMVGAKTRLHYKXXXXXXXXXXXXTAQTCYEKMEKIFCKNCYLIIWSKTKCQRCQRGISNTDLVMQAHKCYYHVECFACYSCGIHLKKGQRFGVKDQKVYCELHYKQI 418
C C KI +++Y++ K + H +CL+C C+ +L + TC+ K I+CK Y +S +C RC GIS +++VM+A YH+ CF C +C L G FG+KD VYC LH++ +
Sbjct: 53 CAGCGGKISDRYYLLAVDK-QWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
The following BLAST results are available for this feature:
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