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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004751 ID=TCONS_00004751|Name=TCONS_00004751|organism=Clytia hemisphaerica|type=transcript|length=1340bp
TTCACAAATTGCACGAAATCGATGCTTCTATAAAATCCTTCGAAATACCA
AATTACGAGGATAAAAGTTCTTCTGGGTTCAAAAGATTCGCTGGACGTCT
TTGGCTTcatcttgaaaatattttgttcagtGAAATTCTTGATTGGATCA
AACAAGATGTTGAAAGCTATCCAAAGAAAACTATTCTTGAAATCTGCTCC
GCTATGGATTACTTTTGCCGGGTTTTAGCAACAAATAACGGTTTAGTCAT
CAACAATGAGCAACGTCAAGATTTTTCTGTAGCTgcattaaaaaaagttt
atggTTGGATGAAATCTGATTGGAATTATTTAACCGAACCGTACAAATTG
CTGCAACggaaatataatgaaaaatCGGTTATGAAGAAAACAGAATATTC
TATGCACCATGGTCTATTCTTAAATCCGCCATCTGGAGAATCCAAGAACG
TttattttctacggaaagatgAAAACTTTAGCGTTGTTCTTAAGAGGATT
TTGGAATCGACAAGACTGAAAAAATCAAGGGCAATAACGGAGGTCACAAA
GATGGAAAATAAGATTCAACATATGAGGAAAAAAGTTGATTTAATAGAAT
ATCAAGGTgtagaaaatgggaaaaaacaTGTCGATCGAATAAAATTGTAT
ATAGAAGACACGCGTGCAATTGCCAAAGATTGCCATACCCTAGCTCAATG
CTCAAACTTTTTCCTATCAGGGGAagatgaaaaatcaatttctattcagt
acAAAGCTTACCAGAAAAGATTAGAGCGATTCAAAGAATCCAGCCGTGAG
ATAAGACACAACGGCTATAAAAAGTGCTCACGCCTTAAATTTTACAACGC
ttcaaaaaaatacataaagTCAAAACGTAACACTCGTCTTCGTAATATCA
AGCCGCTTCCAAAGGGCTCTTGGCTTGAGGATGGTCTTAAGATCAAACGG
AAACTTACGAATCTTGGAATAGAAATACCCTCTGAAATAGAAAGTCAATT
AAAACAGATCGAAAAAGTGTCAGCGATCGCTAAAGAATTGTCTTCGCTAG
CTTCATCACAATGTGATTTCATGACAAAACTGAATAAAGTGAACAAATTA
TGCTTTCGTGTAAAACCATGGAAAATCAGCTATGAAGAGGAAATTGCACA
GCGTTTCTTACACGAAATCAACGATATTCAAACAACCTTGGAAAACACAG
AAGCATTGGTGTACAAATATCTGAAAGAGCCACATTCTGCTGGTAAATTG
ATAAAAGAGATGAATCCATACGATAAAGATATTGATGCTGGTGATTCTAG
GATAAGTAACATTGTTATAGATGGTAACGAAGATTGAGAC Run BLAST on NCBI protein sequence of TCONS_00004751-protein >TCONS_00004751-protein ID=TCONS_00004751-protein|Name=TCONS_00004751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
HKLHEIDASIKSFEIPNYEDKSSSGFKRFAGRLWLHLENILFSEILDWIK
QDVESYPKKTILEICSAMDYFCRVLATNNGLVINNEQRQDFSVAALKKVY
GWMKSDWNYLTEPYKLLQRKYNEKSVMKKTEYSMHHGLFLNPPSGESKNV
YFLRKDENFSVVLKRILESTRLKKSRAITEVTKMENKIQHMRKKVDLIEY
QGVENGKKHVDRIKLYIEDTRAIAKDCHTLAQCSNFFLSGEDEKSISIQY
KAYQKRLERFKESSREIRHNGYKKCSRLKFYNASKKYIKSKRNTRLRNIK
PLPKGSWLEDGLKIKRKLTNLGIEIPSEIESQLKQIEKVSAIAKELSSLA
SSQCDFMTKLNKVNKLCFRVKPWKISYEEEIAQRFLHEINDIQTTLENTE
ALVYKYLKEPHSAGKLIKEMNPYDKDIDAGDSRISNIVIDGNED Run BLAST on NCBI transcript from alignment at sc0000048:301759..303299+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004751 ID=TCONS_00004751|Name=TCONS_00004751|organism=Clytia hemisphaerica|type=transcript|length=1541bp|location=Sequence derived from alignment at sc0000048:301759..303299+ (Clytia hemisphaerica)
TTCACAAATTGCACGAAATCGATGCTTCTATAAAATCCTTCGAAATACCA
AATTACGAGGATAAAAGTTCTTCTGGGTTCAAAAGATTCGCTGGACGTCT
TTGGCTTcatcttgaaaatattttgttcagtGAAATTCTTGATTGGATCA
AACAAGATGTTGAAAGCTATCCAAAGAAAACTATTCTTGAAATCTGCTCC
GCTATGGATTACTTTTGCCGGGTTTTAGCAACAAATAACGGTTTAGTCAT
CAACAATGAGCAACGTCAAGATTTTTCTGTAGCTgcattaaaaaaagttt
atggTTGGATGAAATCTGATTGGAATTATTTAACCGAACCGTACAAATTG
CTGCAACggaaatataatgaaaaatCGGTTATGAAGAAAACAGAATATTC
TATGCACCATGGTCTATTCTTAAATCCGCCATCTGGAGAATCCAAGAACG
TttattttctacggaaagatgAAAACTTTAGCGTTGTTCTTAAGAGGATT
TTGGAATCGACAAGACTGAAAAAATCAAGGGCAATAACGGAGGTCACAAA
GATGGAAAATAAGATTCAACATATGAGGAAAAAAGTTGATTTAATAGAAT
ATCAAGGTgtagaaaatgggaaaaaacaTGTCGATCGAATAAAATTGTAT
ATAGAAGACACGCGTGCAATTGCCAAAGATTGCCATACCCTAGCTCAATG
CTCAAACTTTTTCCTATCAGGGGAagatgaaaaatcaatttctattcagt
acAAAGCTTACCAGAAAAGATTAGAGCGATTCAAAGAATCCAGCCGTGAG
ATAAGACACAACGGCTATAAAAAGTGCTCACGCCTTAAATTTTACAACGC
ttcaaaaaaatacataaagTCAAAACGTAACACTCGTCTTCGTAATATCA
AGCCGCTTCCAAAGGGCTCTTGGCTTGAGGATGGTCTTAAGATCAAACGG
AAACTTACGAATCTTGGAATAGAAATACCCTCTGAAATAGAAAGTCAATT
AAAACAGATCGAAAAAGTGTCAGCGATCGCTAAAGAATTGTCTTCGCTAG
CTTCATCACAATGTGATTTCATGACAAAACTGAATAAAGTGAACAAATTA
TGCTTTCGTGTAAAACCATGGAAAATCAGCTATGAAGAGGAAATTGCACA
GCGTTTCTTACACGAAATCAACGATATTCAAACAACCTTGGAAAACACAG
AAGCATTGGTGTACAAATATCTGAAAGAGCCACATTCTGCTGGTAAATTG
ATAAAAGAGATGAATCCATACGATAAAGATATTGATGCTGGTGATTCTAG
GACAAGTAACATTGTTATAGATGGTAACGAAGATTGGGACTACCTGACAT
AGACATATCTTATTGAATGAAATACAATTATGTAAAAAATGAATTGATAT
GTTTTTGTTCTCTTACATTGCCACGAAGTCAGAGCGACGAGGATCATTTT
CTGTCAGCTAATGCGATTTAAAAATTATGGAGTTTTGANAGGTGATTCTA
GGATAAGTAACATTGTTATAGATGGTAACGAAGATTGAGAC Coding sequence (CDS) from alignment at sc0000048:301759..303299+ >TCONS_00004751 ID=TCONS_00004751|Name=TCONS_00004751|organism=Clytia hemisphaerica|type=CDS|length=2670bp|location=Sequence derived from alignment at sc0000048:301759..303299+ (Clytia hemisphaerica)
CACAAATTGCACGAAATCGATGCTTCTATAAAATCCTTCGAAATACCAAA
TTACGAGGATAAAAGTTCTTCTGGGTTCAAAAGATTCGCTGGACGTCTTT
GGCTTcatcttgaaaatattttgttcagtGAAATTCTTGATTGGATCAAA
CAAGATGTTGAAAGCTATCCAAAGAAAACTATTCTTGAAATCTGCTCCGC
TATGGATTACTTTTGCCGGGTTTTAGCAACAAATAACGGTTTAGTCATCA
ACAATGAGCAACGTCAAGATTTTTCTGTAGCTgcattaaaaaaagtttat
ggTTGGATGAAATCTGATTGGAATTATTTAACCGAACCGTACAAATTGCT
GCAACggaaatataatgaaaaatCGGTTATGAAGAAAACAGAATATTCTA
TGCACCATGGTCTATTCTTAAATCCGCCATCTGGAGAATCCAAGAACGTt
tattttctacggaaagatgAAAACTTTAGCGTTGTTCTTAAGAGGATTTT
GGAATCGACAAGACTGAAAAAATCAAGGGCAATAACGGAGGTCACAAAGA
TGGAAAATAAGATTCAACATATGAGGAAAAAAGTTGATTTAATAGAATAT
CAAGGTgtagaaaatgggaaaaaacaTGTCGATCGAATAAAATTGTATAT
AGAAGACACGCGTGCAATTGCCAAAGATTGCCATACCCTAGCTCAATGCT
CAAACTTTTTCCTATCAGGGGAagatgaaaaatcaatttctattcagtac
AAAGCTTACCAGAAAAGATTAGAGCGATTCAAAGAATCCAGCCGTGAGAT
AAGACACAACGGCTATAAAAAGTGCTCACGCCTTAAATTTTACAACGCtt
caaaaaaatacataaagTCAAAACGTAACACTCGTCTTCGTAATATCAAG
CCGCTTCCAAAGGGCTCTTGGCTTGAGGATGGTCTTAAGATCAAACGGAA
ACTTACGAATCTTGGAATAGAAATACCCTCTGAAATAGAAAGTCAATTAA
AACAGATCGAAAAAGTGTCAGCGATCGCTAAAGAATTGTCTTCGCTAGCT
TCATCACAATGTGATTTCATGACAAAACTGAATAAAGTGAACAAATTATG
CTTTCGTGTAAAACCATGGAAAATCAGCTATGAAGAGGAAATTGCACAGC
GTTTCTTACACGAAATCAACGATATTCAAACAACCTTGGAAAACACAGAA
GCATTGGTGTACAAATATCTGAAAGAGCCACATTCTGCTGGTAAATTGAT
AAAAGAGATGAATCCATACGATAAAGATATTGATGCTGGTGATTCTAGGA
TAAGTAACATTGTTATAGATGGTAACGAAGATTGACACAAATTGCACGAA
ATCGATGCTTCTATAAAATCCTTCGAAATACCAAATTACGAGGATAAAAG
TTCTTCTGGGTTCAAAAGATTCGCTGGACGTCTTTGGCTTcatcttgaaa
atattttgttcagtGAAATTCTTGATTGGATCAAACAAGATGTTGAAAGC
TATCCAAAGAAAACTATTCTTGAAATCTGCTCCGCTATGGATTACTTTTG
CCGGGTTTTAGCAACAAATAACGGTTTAGTCATCAACAATGAGCAACGTC
AAGATTTTTCTGTAGCTgcattaaaaaaagtttatggTTGGATGAAATCT
GATTGGAATTATTTAACCGAACCGTACAAATTGCTGCAACggaaatataa
tgaaaaatCGGTTATGAAGAAAACAGAATATTCTATGCACCATGGTCTAT
TCTTAAATCCGCCATCTGGAGAATCCAAGAACGTttattttctacggaaa
gatgAAAACTTTAGCGTTGTTCTTAAGAGGATTTTGGAATCGACAAGACT
GAAAAAATCAAGGGCAATAACGGAGGTCACAAAGATGGAAAATAAGATTC
AACATATGAGGAAAAAAGTTGATTTAATAGAATATCAAGGTgtagaaaat
gggaaaaaacaTGTCGATCGAATAAAATTGTATATAGAAGACACGCGTGC
AATTGCCAAAGATTGCCATACCCTAGCTCAATGCTCAAACTTTTTCCTAT
CAGGGGAagatgaaaaatcaatttctattcagtacAAAGCTTACCAGAAA
AGATTAGAGCGATTCAAAGAATCCAGCCGTGAGATAAGACACAACGGCTA
TAAAAAGTGCTCACGCCTTAAATTTTACAACGCttcaaaaaaatacataa
agTCAAAACGTAACACTCGTCTTCGTAATATCAAGCCGCTTCCAAAGGGC
TCTTGGCTTGAGGATGGTCTTAAGATCAAACGGAAACTTACGAATCTTGG
AATAGAAATACCCTCTGAAATAGAAAGTCAATTAAAACAGATCGAAAAAG
TGTCAGCGATCGCTAAAGAATTGTCTTCGCTAGCTTCATCACAATGTGAT
TTCATGACAAAACTGAATAAAGTGAACAAATTATGCTTTCGTGTAAAACC
ATGGAAAATCAGCTATGAAGAGGAAATTGCACAGCGTTTCTTACACGAAA
TCAACGATATTCAAACAACCTTGGAAAACACAGAAGCATTGGTGTACAAA
TATCTGAAAGAGCCACATTCTGCTGGTAAATTGATAAAAGAGATGAATCC
ATACGATAAAGATATTGATGCTGGTGATTCTAGGATAAGTAACATTGTTA
TAGATGGTAACGAAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004751-exon-sc0000048-1491911889:301759..303048 | TCONS_00004751-exon-sc0000048-1491911889:301759..303048 | Clytia hemisphaerica | exon |
| TCONS_00004751-exon-sc0000048-1510915933:301759..303048 | TCONS_00004751-exon-sc0000048-1510915933:301759..303048 | Clytia hemisphaerica | exon |
| TCONS_00004751-exon-sc0000048-1575043694:301759..303048 | TCONS_00004751-exon-sc0000048-1575043694:301759..303048 | Clytia hemisphaerica | exon |
| TCONS_00004751-exon-sc0000048-1491911889:303250..303299 | TCONS_00004751-exon-sc0000048-1491911889:303250..303299 | Clytia hemisphaerica | exon |
| TCONS_00004751-exon-sc0000048-1510915933:303250..303299 | TCONS_00004751-exon-sc0000048-1510915933:303250..303299 | Clytia hemisphaerica | exon |
| TCONS_00004751-exon-sc0000048-1575043694:303250..303299 | TCONS_00004751-exon-sc0000048-1575043694:303250..303299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:301759..303299 + |
Blast
The following BLAST results are available for this feature:
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