|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004726 ID=TCONS_00004726|Name=TCONS_00004726|organism=Clytia hemisphaerica|type=transcript|length=2421bp
Aggccctgacccgaaaattggagttgcttacaaaaaaaaaatactatctc
tgaaattttttattttatagccACCCCAGTGGTTTTAAAAACTGCATCGG
TTCACTGAGCCAGGTGTTTTTTCAATAGATATTCTCAACCAGCCCCATCA
AATTTTAAGCATAAACTAATCGACCAAACATGGTTTACGGGAAATTGCTG
CCTGTAAATACTGGTAAATATGACTTTCATACTCCTAGTAAGGTAAAGCA
ATTTCATTGTTCAAAGGAAACATTTTGTGCAGGGTTTTAATCTTGTCTAA
AACTTGTAAACTTTTGTTCCCTCTGAAGGAATTCTCCATCATGCCATTTA
TTTCCCACGAATCATCAATATTACCTAAAACACAAATATTATTGTGAAAA
ACCTGGAAATGGACAAGATGTAACCTTATTTAATGGCTAGTAAGAAGACA
TATGCAACGCCAATAATATCTTTCTTAGTTTcttagttttgaaaaaacgg
TATAAAGAACGACAATAAAAGgcataaaaacaagtaaaaactTCCAAGCA
CGAAATAAATTTACTTTTATAATTTGCTGTATACCGTGTGATCTAATGCG
TGTGATGTTAACTTCTCAATTCGGATATTTGATTAGCTGTACCATTTCTC
AATGTATCAATTTCGCATACCTTGAAAGAAAAGCAACATCTTCAAATTAT
TCCACTCTCTTCTACCAGTATATATAATCTGAATCACATCTTAATACCGA
TAAAAACAGCAGCTGATACGCAACATCATGTCAAAACCTTCCTATCGTTT
TTGAACGTTAATCATGTGGCGTTataacgttgaaataacgttaaGTTTTG
GCTGGTGACGGGTACTTAATAGAAATATCTAGTTAGTTGAAGAATTTACA
CTCACCAAGACAGGCGAAACCCGCAAAATTCTAGAATCATTGACTTAAAT
CGTATTCTTTTGAGTGGGTTAATTTGAGCCATTTTCCCGACATTTAGTCC
TTGCAAAAAAATCGCAAACACTTTAAGATTCTCAATTCGCGAAAAAAGTA
TAGGCAAAAACTAATATCCACATAAGGTGATtaggcaaatacttttttat
ttattgtaatCGCTTTTATTTAAAGTTCTTTATGTGATTGTTAAAACACC
CCGTGCAATTGcaaggatgtgcctgactgattgAACTCCTAGATTAttac
cgtgaagttgggtaacttgcatcagcgcAGATCAgcggagggaaacttgc
atagatagccatcaaatgaataaccaatcaaagcaacaaaatttcgaaat
aaatgaactacgcagctcccctcgcagctctactctaccatttttgtttt
gatttaactttgtattttaatgaccagccaggtcatttattatttgaggg
ctatgttagcctccactgatgcaagttatccgATCTCTTACAAAATAGGT
CTTACAAAACTTTCTTTACTTTAAGTTCCTCTGATCTGTGATAGGGTGTG
CTATCaatgaaagttatcgtgacatgttatgacaaaaagtataattgata
aacttggtggagttatcaaaaaaaattagttgtcaaagagatttaacagt
aagtgaaaataaaggccagatatcaacagtcccatgttttaaacaatcgt
cccaagttagagcagttgacggtacattactttccctcagccaaaaaaag
catgataaattatcttgtctctggtAACTGTtatggagtaattagttatt
caataggctgtcgcattctccaaaacaacttttGTCAAGCGCAATCAGAT
CTCAAGCGAACAGCCAAAAAATTctaggtaatattcgattggttttgATT
GAGAATTTATGATTTCTGTCGTCGATGATGTTTGATATCTGTTGGTTATT
TTTTGATATGCTAGCCTGGATATCTAGGCTGTAAACTAATTGGCATACAA
CCAAGAATTTACAGTGACATAATAAGGGTGATAGTCAAACTAAAGTAAAG
TGTAAaggtaaaaaagtaaaaaagggcCGAAGTCGTGGTCTGTTACACAT
TGCGTGTTGCATTTGGCAATCTGAAAGCTCCCCTGGCCTGGAATGTAAGG
TAATCAGTGTTCTAATAATACTCCACGGAAGGATTGAACACAATCGAGTG
ATATAACTTTATTGAATGCAATTGAATACAATCAAACGCCATCAAACGCA
ATCGACTTTCAATTGAACCACAATCAAATCCAAAATTGGGATAATATTCA
ATTGAGATTTAATCAATTTGACAATCAAGTTTCAATTAGTTGATTGCATT
TGAtctggttcgactggttcgattgttgatctcgttcgattgagatcatc
TGGTAATCCTGACACTTCATAACATTATTAAAAGGGGTGTGTTTGTGTAT
AGTCTGGCTCTCTAGCCAACA Run BLAST on NCBI transcript from alignment at sc0000047:685335..687755 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004726 ID=TCONS_00004726|Name=TCONS_00004726|organism=Clytia hemisphaerica|type=transcript|length=2421bp|location=Sequence derived from alignment at sc0000047:685335..687755 (Clytia hemisphaerica)
TGTTGGCTAGAGAGCCAGACTATACACAAACACACCCCTTTTAATAATGT
TATGAAGTGTCAGGATTACCAgatgatctcaatcgaacgagatcaacaat
cgaaccagtcgaaccagaTCAAATGCAATCAACTAATTGAAACTTGATTG
TCAAATTGATTAAATCTCAATTGAATATTATCCCAATTTTGGATTTGATT
GTGGTTCAATTGAAAGTCGATTGCGTTTGATGGCGTTTGATTGTATTCAA
TTGCATTCAATAAAGTTATATCACTCGATTGTGTTCAATCCTTCCGTGGA
GTATTATTAGAACACTGATTACCTTACATTCCAGGCCAGGGGAGCTTTCA
GATTGCCAAATGCAACACGCAATGTGTAACAGACCACGACTTCGgccctt
ttttacttttttacctTTACACTTTACTTTAGTTTGACTATCACCCTTAT
TATGTCACTGTAAATTCTTGGTTGTATGCCAATTAGTTTACAGCCTAGAT
ATCCAGGCTAGCATATCAAAAAATAACCAACAGATATCAAACATCATCGA
CGACAGAAATCATAAATTCTCAATcaaaaccaatcgaatattacctagAA
TTTTTTGGCTGTTCGCTTGAGATCTGATTGCGCTTGACaaaagttgtttt
ggagaatgcgacagcctattgaataactaattactccataACAGTTacca
gagacaagataatttatcatgctttttttggctgagggaaagtaatgtac
cgtcaactgctctaacttgggacgattgtttaaaacatgggactgttgat
atctggcctttattttcacttactgttaaatctctttgacaactaatttt
ttttgataactccaccaagtttatcaattatactttttgtcataacatgt
cacgataactttcattGATAGCACACCCTATCACAGATCAGAGGAACTTA
AAGTAAAGAAAGTTTTGTAAGACCTATTTTGTAAGAGATcggataacttg
catcagtggaggctaacatagccctcaaataataaatgacctggctggtc
attaaaatacaaagttaaatcaaaacaaaaatggtagagtagagctgcga
ggggagctgcgtagttcatttatttcgaaattttgttgctttgattggtt
attcatttgatggctatctatgcaagtttccctccgcTGATCTgcgctga
tgcaagttacccaacttcacggtaaTAATCTAGGAGTTcaatcagtcagg
cacatccttgCAATTGCACGGGGTGTTTTAACAATCACATAAAGAACTTT
AAATAAAAGCGattacaataaataaaaaagtatttgcctaATCACCTTAT
GTGGATATTAGTTTTTGCCTATACTTTTTTCGCGAATTGAGAATCTTAAA
GTGTTTGCGATTTTTTTGCAAGGACTAAATGTCGGGAAAATGGCTCAAAT
TAACCCACTCAAAAGAATACGATTTAAGTCAATGATTCTAGAATTTTGCG
GGTTTCGCCTGTCTTGGTGAGTGTAAATTCTTCAACTAACTAGATATTTC
TATTAAGTACCCGTCACCAGCCAAAACttaacgttatttcaacgttatAA
CGCCACATGATTAACGTTCAAAAACGATAGGAAGGTTTTGACATGATGTT
GCGTATCAGCTGCTGTTTTTATCGGTATTAAGATGTGATTCAGATTATAT
ATACTGGTAGAAGAGAGTGGAATAATTTGAAGATGTTGCTTTTCTTTCAA
GGTATGCGAAATTGATACATTGAGAAATGGTACAGCTAATCAAATATCCG
AATTGAGAAGTTAACATCACACGCATTAGATCACACGGTATACAGCAAAT
TATAAAAGTAAATTTATTTCGTGCTTGGAagtttttacttgtttttatgc
CTTTTATTGTCGTTCTTTATAccgttttttcaaaactaagAAACTAAGAA
AGATATTATTGGCGTTGCATATGTCTTCTTACTAGCCATTAAATAAGGTT
ACATCTTGTCCATTTCCAGGTTTTTCACAATAATATTTGTGTTTTAGGTA
ATATTGATGATTCGTGGGAAATAAATGGCATGATGGAGAATTCCTTCAGA
GGGAACAAAAGTTTACAAGTTTTAGACAAGATTAAAACCCTGCACAAAAT
GTTTCCTTTGAACAATGAAATTGCTTTACCTTACTAGGAGTATGAAAGTC
ATATTTACCAGTATTTACAGGCAGCAATTTCCCGTAAACCATGTTTGGTC
GATTAGTTTATGCTTAAAATTTGATGGGGCTGGTTGAGAATATCTATTGA
AAAAACACCTGGCTCAGTGAACCGATGCAGTTTTTAAAACCACTGGGGTg
gctataaaataaaaaatttcagagatagtattttttttttgtaagcaact
ccaattttcgggtcagggccT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004726-exon-sc0000047-1491911889:685335..687755 | TCONS_00004726-exon-sc0000047-1491911889:685335..687755 | Clytia hemisphaerica | exon |
| TCONS_00004726-exon-sc0000047-1510915933:685335..687755 | TCONS_00004726-exon-sc0000047-1510915933:685335..687755 | Clytia hemisphaerica | exon |
| TCONS_00004726-exon-sc0000047-1575043694:685335..687755 | TCONS_00004726-exon-sc0000047-1575043694:685335..687755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:685335..687755 . |
Blast
The following BLAST results are available for this feature:
|
