TCONS_00004723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004723
Unique NameTCONS_00004723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004723 ID=TCONS_00004723|Name=TCONS_00004723|organism=Clytia hemisphaerica|type=transcript|length=1105bp
cagcttgTGAGCTATTTTGTAAGTGTTGAAAAAAGGCAAAATGATGATTC
TAGCATGGCTTATAATTCAGTCACAAATCTTTCTTGCAAATGGTACCCTA
ACACCAGAAGATAAAATGTTCAATTTGGTATCTACGGGCAAAGAGTATGA
AGGGATCACTGCAATTTATGAATCAACTGTTCCAGACAAGCGTACGTGTA
TAAGTAAATGTTTTTACAATACTAAATGTTTGTCTTATGATGTTTACAAA
GTATCTGATCAAGCTATTGAATGCCGCATGTTCAACGTGACTTTTGATTA
TTTCCTCTATTTTGGTCACCAACTAATTGTGAGATCTGGTGTTGAAATCC
AGTCcaagtttttcatcaaaacaagtTGTGTAGCTTGGTATAAATCAGGG
GCACGCACCAATGGCGTGTACAAGGTTCTTATCAGTGGGAAGTATGTGAA
AGCAGTTTATTGTGATATGCAGGAAGACGGGGGTGGGTGGATGGCGTTCC
AAAGGCGTTTTGACGGTTCGGTCACCTTTTCCGAACGCTTATGGTCGGAA
TATAGAGACGGTTTTGGACAAATTGCAGGCGAACATTGGTTAGGAAATGA
AGTGGTCCACCAAATGACTTTATCACAACCACATGATCTACTATTTATTG
GAAGGAATTTTTCTACTGGTGAAtttacgaaaaagaaaatgaaaaatttc
ctgATCAAATCAGAAGACGAGTTTTATTTCATGACTTATTCGATAAATTA
TCCTGAGTACCCTGGGCTGAATGTATTCACAAAAAATCGTAATTTTTCGA
CGATAGACAGAGATCACGATAAAAGCGCTGATAAAAATTGCGCTGATTTG
TTTGGCAAAGGTGGGTGGTGGTTTGGTGCGTGCAGTAACAACCAAATGAA
CGGAAGATACATACTACCAGGTTCTTCTGTTGACCCTAAACACGGAATGT
ACCATAGTAAATGGAGTCCAAACGAGAGTTTGAAGTCAAGTTTATTTCTT
ATTCGACCCATCCAATGAAATTATTGACCTTGTGGACTTAAATAAATGGA
CCATCTCAGCTGCCGATATTTATAACAAAGATAAAGATTGTTTGTAAATT
TCGAA
Run BLAST on NCBI

protein sequence of TCONS_00004723-protein

>TCONS_00004723-protein ID=TCONS_00004723-protein|Name=TCONS_00004723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MMILAWLIIQSQIFLANGTLTPEDKMFNLVSTGKEYEGITAIYESTVPDK
RTCISKCFYNTKCLSYDVYKVSDQAIECRMFNVTFDYFLYFGHQLIVRSG
VEIQSKFFIKTSCVAWYKSGARTNGVYKVLISGKYVKAVYCDMQEDGGGW
MAFQRRFDGSVTFSERLWSEYRDGFGQIAGEHWLGNEVVHQMTLSQPHDL
LFIGRNFSTGEFTKKKMKNFLIKSEDEFYFMTYSINYPEYPGLNVFTKNR
NFSTIDRDHDKSADKNCADLFGKGGWWFGACSNNQMNGRYILPGSSVDPK
HGMYHSKWSPNESLKSSLFLIRPIQ
Run BLAST on NCBI

transcript from alignment at sc0000047:640727..641831

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004723 ID=TCONS_00004723|Name=TCONS_00004723|organism=Clytia hemisphaerica|type=transcript|length=1105bp|location=Sequence derived from alignment at sc0000047:640727..641831 (Clytia hemisphaerica)
TTCGAAATTTACAAACAATCTTTATCTTTGTTATAAATATCGGCAGCTGA
GATGGTCCATTTATTTAAGTCCACAAGGTCAATAATTTCATTGGATGGGT
CGAATAAGAAATAAACTTGACTTCAAACTCTCGTTTGGACTCCATTTACT
ATGGTACATTCCGTGTTTAGGGTCAACAGAAGAACCTGGTAGTATGTATC
TTCCGTTCATTTGGTTGTTACTGCACGCACCAAACCACCACCCACCTTTG
CCAAACAAATCAGCGCAATTTTTATCAGCGCTTTTATCGTGATCTCTGTC
TATCGTCGAAAAATTACGATTTTTTGTGAATACATTCAGCCCAGGGTACT
CAGGATAATTTATCGAATAAGTCATGAAATAAAACTCGTCTTCTGATTTG
ATcaggaaatttttcattttctttttcgtaaaTTCACCAGTAGAAAAATT
CCTTCCAATAAATAGTAGATCATGTGGTTGTGATAAAGTCATTTGGTGGA
CCACTTCATTTCCTAACCAATGTTCGCCTGCAATTTGTCCAAAACCGTCT
CTATATTCCGACCATAAGCGTTCGGAAAAGGTGACCGAACCGTCAAAACG
CCTTTGGAACGCCATCCACCCACCCCCGTCTTCCTGCATATCACAATAAA
CTGCTTTCACATACTTCCCACTGATAAGAACCTTGTACACGCCATTGGTG
CGTGCCCCTGATTTATACCAAGCTACACAacttgttttgatgaaaaactt
gGACTGGATTTCAACACCAGATCTCACAATTAGTTGGTGACCAAAATAGA
GGAAATAATCAAAAGTCACGTTGAACATGCGGCATTCAATAGCTTGATCA
GATACTTTGTAAACATCATAAGACAAACATTTAGTATTGTAAAAACATTT
ACTTATACACGTACGCTTGTCTGGAACAGTTGATTCATAAATTGCAGTGA
TCCCTTCATACTCTTTGCCCGTAGATACCAAATTGAACATTTTATCTTCT
GGTGTTAGGGTACCATTTGCAAGAAAGATTTGTGACTGAATTATAAGCCA
TGCTAGAATCATCATTTTGCCTTTTTTCAACACTTACAAAATAGCTCAca
agctg

Coding sequence (CDS) from alignment at sc0000047:640727..641831

>TCONS_00004723 ID=TCONS_00004723|Name=TCONS_00004723|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000047:640727..641831 (Clytia hemisphaerica)
TCATTGGATGGGTCGAATAAGAAATAAACTTGACTTCAAACTCTCGTTTG
GACTCCATTTACTATGGTACATTCCGTGTTTAGGGTCAACAGAAGAACCT
GGTAGTATGTATCTTCCGTTCATTTGGTTGTTACTGCACGCACCAAACCA
CCACCCACCTTTGCCAAACAAATCAGCGCAATTTTTATCAGCGCTTTTAT
CGTGATCTCTGTCTATCGTCGAAAAATTACGATTTTTTGTGAATACATTC
AGCCCAGGGTACTCAGGATAATTTATCGAATAAGTCATGAAATAAAACTC
GTCTTCTGATTTGATcaggaaatttttcattttctttttcgtaaaTTCAC
CAGTAGAAAAATTCCTTCCAATAAATAGTAGATCATGTGGTTGTGATAAA
GTCATTTGGTGGACCACTTCATTTCCTAACCAATGTTCGCCTGCAATTTG
TCCAAAACCGTCTCTATATTCCGACCATAAGCGTTCGGAAAAGGTGACCG
AACCGTCAAAACGCCTTTGGAACGCCATCCACCCACCCCCGTCTTCCTGC
ATATCACAATAAACTGCTTTCACATACTTCCCACTGATAAGAACCTTGTA
CACGCCATTGGTGCGTGCCCCTGATTTATACCAAGCTACACAacttgttt
tgatgaaaaacttgGACTGGATTTCAACACCAGATCTCACAATTAGTTGG
TGACCAAAATAGAGGAAATAATCAAAAGTCACGTTGAACATGCGGCATTC
AATAGCTTGATCAGATACTTTGTAAACATCATAAGACAAACATTTAGTAT
TGTAAAAACATTTACTTATACACGTACGCTTGTCTGGAACAGTTGATTCA
TAAATTGCAGTGATCCCTTCATACTCTTTGCCCGTAGATACCAAATTGAA
CATTTTATCTTCTGGTGTTAGGGTACCATTTGCAAGAAAGATTTGTGACT
GAATTATAAGCCATGCTAGAATCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002671XLOC_002671Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004723-proteinTCONS_00004723-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004723-exon-sc0000047-1491911889:640727..641831TCONS_00004723-exon-sc0000047-1491911889:640727..641831Clytia hemisphaericaexon
TCONS_00004723-exon-sc0000047-1510915933:640727..641831TCONS_00004723-exon-sc0000047-1510915933:640727..641831Clytia hemisphaericaexon
TCONS_00004723-exon-sc0000047-1575043694:640727..641831TCONS_00004723-exon-sc0000047-1575043694:640727..641831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:640727..641831 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158383	0.154448	0.806981	1.00881	0.266985	0.126585	0.305439	0.23829	0.0333665	0.165319	0	0.131853	3.13373	2.6254	0.17987	0.675598	0.505314	0.548397	5.26139	2.46654	1.1485	1.06438	0.771794	1.07315	1.57295	1.70735	0.0542936	0	0.0439481	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00004723 vs. Swiss-Prot (Human)
Match: ANGP4 (Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.804e-34
Identity = 80/219 (36.53%), Postives = 123/219 (56.16%), Query Frame = 2 
Query:  377 CVAWYKSGARTNGVYKVLIS-GKYVKAVYCDMQEDGGGWMAFQRRFDGSVTFSERLWSEYRDGFGQIAGEHWLGNEVVHQMTLSQPHDLLFIGRNFSTGEFTKKKMKNFLIKSEDEFYFMTYSINYPEYPGL--NVFTKNRNFSTIDRDHDKSADKNCADLFGKGGWWFGACSNNQMNGRYILPGSSVDPKHGMYHSKW----SPNESLKSSLFLIRPI 1012
            C    +SGA  +GVY + +S     + V+CD+Q  GG W   QRR +G+V F +R W +Y+ GFG  AGEHWLGNEVVHQ+T    + L    +++  G     + ++F + SE++ Y ++  + Y    G   ++  +N +FST+D D+D    K CA +   GGWWF AC  + +NG Y     + D K+ M   +W     P+ SL++S  +IRP+
Sbjct:  291 CAEIQRSGASASGVYTIQVSNATKPRKVFCDLQSSGGRWTLIQRRENGTVNF-QRNWKDYKQGFGDPAGEHWLGNEVVHQLTRRAAYSLRVELQDWE-GHEAYAQYEHFHLGSENQLYRLSV-VGYSGSAGRQSSLVLQNTSFSTLDSDNDHCLCK-CAQVMS-GGWWFDACGLSNLNGVYY---HAPDNKYKMDGIRWHYFKGPSYSLRASRMMIRPL 501
The following BLAST results are available for this feature:
BLAST of TCONS_00004723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGP41.804e-3436.53Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1[more]
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