TCONS_00004716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004716
Unique NameTCONS_00004716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004716 ID=TCONS_00004716|Name=TCONS_00004716|organism=Clytia hemisphaerica|type=transcript|length=629bp
AACCCTTCCACTGTTGGCCGgattaaaaaatcattaataGGATGTATCAC
ACAGTACTCTACACAGCACGAGCAAGACATGACACCCGTCTATATTCTTT
TACTGCTGTTTCGAAacgtaaacaaaacaaaaatatggaGTGGGGAgcta
ttaaaacaaaagaattaaaaaaacatgtttttgcaATGATCATAAAAGAT
AATGACATTTGGTTTTTGTGTTGATGACACTGACAATGAAATATTGAACT
GTATctttataaaatacaaaacagtTGAAAATTGCACCGAACGATTATCA
TTAGATTGTTGAAACAAAAGAGAAGTATTAGAGTCACTGTCAGTTTGATT
AAAACAATCCGTTATCAATGCTATAAGTCACCATGGTAACTTAATTACCA
CTTAATTGACTCCTAGGttatgttgttttttcgaaTTAAAACTAGTTCTA
TGCAAATTTTTATCTCGATCTCATCTTGTGTAGCTGCACGTCGGCTTGTT
TTACATATTCTTTCACTACAAACAAAAACTTATACTTAAAAGTATTGCTT
ATGTACTAGCACAGGAAAAATCATAACGTCCGGACACCAAACAAAACACC
TTTTCTAAAAAGGGAGAAAATATAAACAc
Run BLAST on NCBI

transcript from alignment at sc0000047:514387..515015

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004716 ID=TCONS_00004716|Name=TCONS_00004716|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at sc0000047:514387..515015 (Clytia hemisphaerica)
gTGTTTATATTTTCTCCCTTTTTAGAAAAGGTGTTTTGTTTGGTGTCCGG
ACGTTATGATTTTTCCTGTGCTAGTACATAAGCAATACTTTTAAGTATAA
GTTTTTGTTTGTAGTGAAAGAATATGTAAAACAAGCCGACGTGCAGCTAC
ACAAGATGAGATCGAGATAAAAATTTGCATAGAACTAGTTTTAAttcgaa
aaaacaacataaCCTAGGAGTCAATTAAGTGGTAATTAAGTTACCATGGT
GACTTATAGCATTGATAACGGATTGTTTTAATCAAACTGACAGTGACTCT
AATACTTCTCTTTTGTTTCAACAATCTAATGATAATCGTTCGGTGCAATT
TTCAactgttttgtattttataaagATACAGTTCAATATTTCATTGTCAG
TGTCATCAACACAAAAACCAAATGTCATTATCTTTTATGATCATtgcaaa
aacatgtttttttaattcttttgttttaatagcTCCCCACtccatatttt
tgttttgtttacgtTTCGAAACAGCAGTAAAAGAATATAGACGGGTGTCA
TGTCTTGCTCGTGCTGTGTAGAGTACTGTGTGATACATCCtattaatgat
tttttaatcCGGCCAACAGTGGAAGGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002664XLOC_002664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004716-exon-sc0000047-1491911889:514387..515015TCONS_00004716-exon-sc0000047-1491911889:514387..515015Clytia hemisphaericaexon
TCONS_00004716-exon-sc0000047-1510915933:514387..515015TCONS_00004716-exon-sc0000047-1510915933:514387..515015Clytia hemisphaericaexon
TCONS_00004716-exon-sc0000047-1575043694:514387..515015TCONS_00004716-exon-sc0000047-1575043694:514387..515015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:514387..515015 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0956422	0.280713	0.455654	0	0.325802	0.101671	0.569455	0.264511	0	0.900114	0.112358	0.116685	0.0959306	0.0514741	0	0	0.0897943	0	0.245014	0.478036	0	0.088053	0.0906926	0.161882	0	0	0.281268	0.0955225
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top