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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004710 ID=TCONS_00004710|Name=TCONS_00004710|organism=Clytia hemisphaerica|type=transcript|length=1069bp
NNGCACCTTTCAAGCTTGTATTGATTACGGCTTCCCACCTATTGATAAAC
TGTTTATGCAATGCAATGGTCACCTGTTTGTCTTTGGTGGAGCTGACAGA
AAGATTGCACTAAAGGGAAGTAAAGCTGCAAGAGAAATTCTCAAGTCGTC
CCATGCAAGTCCCCCACAAGGTTATAAATCTGAACCAAAGAAATATAGCA
CATTTACTACAGCACCACATACAACAACACCAGCACCTAAACAGAATCTG
GCTTCGACCTCACCAATACCAAAAAACACTATTCCTCAATTGCCAACTAC
TGCAATACAACAGTTGTCAAGCACTGGAAAATCAATTTTATCAGCTTCTC
TTCAATCAGATGTGGAAAAAGCTTACCAGAAAGGCCAAACTGTTGTTGTG
GTAGGAAAAGATTCAACACTACCAGTAGTATTTCTTACTGAGAATACTTC
AAATGTTACCAATTTGGAAATGTTAGTTGGACTCAAATCTCAATTGGAAT
CAGAGATCCATAgaagaacttttgcaaaataaaagattttggtataatga
actttttactgttttttaaaaattcagaTTTTACAAATGTAATTTTTCAT
TATCTATTCTTGTATGATACTTTATATGAAtattgtatattataaaacct
AGACCTGTACCTGGAAACTAAGATCTTACTCCCTTATAACCTGCAATGAC
ATTTTTTTCTTGGATGAAATTTCTAAAGCATAGCTTTataaaaattcact
atttttTGTAAGTGTCTCCAAAGCTTGCTCTTATCAACTTGTTTTCTTCC
ATTACAGTTCGCCTTTTTGTAACCtttattaaaaagcaaatttctTAAAG
CCTGTTGAATGCCTCCAGGGTCTAGGTTCAGGTTTTGCTTTTATAGTATG
CCAtctattttatcaaattttgattattatttAGACATTTTATTTAACGA
AActtagaaaatttagaattttaagcactgttttggattttcaaatttac
caaaataaaaTTAGTGAGATATTTCTCTTATAGCAGTTACTTTTATTTGT
AAGTAATTTTGAATGATAC Run BLAST on NCBI protein sequence of TCONS_00004710-protein >TCONS_00004710-protein ID=TCONS_00004710-protein|Name=TCONS_00004710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
XTFQACIDYGFPPIDKLFMQCNGHLFVFGGADRKIALKGSKAAREILKSS
HASPPQGYKSEPKKYSTFTTAPHTTTPAPKQNLASTSPIPKNTIPQLPTT
AIQQLSSTGKSILSASLQSDVEKAYQKGQTVVVVGKDSTLPVVFLTENTS
NVTNLEMLVGLKSQLESEIHRRTFAK Run BLAST on NCBI transcript from alignment at sc0000047:326532..327600 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004710 ID=TCONS_00004710|Name=TCONS_00004710|organism=Clytia hemisphaerica|type=transcript|length=1069bp|location=Sequence derived from alignment at sc0000047:326532..327600 (Clytia hemisphaerica)
GTATCATTCAAAATTACTTACAAATAAAAGTAACTGCTATAAGAGAAATA
TCTCACTAAttttattttggtaaatttgaaaatccaaaacagtgcttaaa
attctaaattttctaagTTTCGTTAAATAAAATGTCTaaataataatcaa
aatttgataaaatagaTGGCATACTATAAAAGCAAAACCTGAACCTAGAC
CCTGGAGGCATTCAACAGGCTTTAagaaatttgctttttaataaaGGTTA
CAAAAAGGCGAACTGTAATGGAAGAAAACAAGTTGATAAGAGCAAGCTTT
GGAGACACTTACAaaaaatagtgaatttttatAAAGCTATGCTTTAGAAA
TTTCATCCAAGAAAAAAATGTCATTGCAGGTTATAAGGGAGTAAGATCTT
AGTTTCCAGGTACAGGTCTaggttttataatatacaataTTCATATAAAG
TATCATACAAGAATAGATAATGAAAAATTACATTTGTAAAAtctgaattt
ttaaaaaacagtaaaaagttcattataccaaaatcttttattttgcaaaa
gttcttcTATGGATCTCTGATTCCAATTGAGATTTGAGTCCAACTAACAT
TTCCAAATTGGTAACATTTGAAGTATTCTCAGTAAGAAATACTACTGGTA
GTGTTGAATCTTTTCCTACCACAACAACAGTTTGGCCTTTCTGGTAAGCT
TTTTCCACATCTGATTGAAGAGAAGCTGATAAAATTGATTTTCCAGTGCT
TGACAACTGTTGTATTGCAGTAGTTGGCAATTGAGGAATAGTGTTTTTTG
GTATTGGTGAGGTCGAAGCCAGATTCTGTTTAGGTGCTGGTGTTGTTGTA
TGTGGTGCTGTAGTAAATGTGCTATATTTCTTTGGTTCAGATTTATAACC
TTGTGGGGGACTTGCATGGGACGACTTGAGAATTTCTCTTGCAGCTTTAC
TTCCCTTTAGTGCAATCTTTCTGTCAGCTCCACCAAAGACAAACAGGTGA
CCATTGCATTGCATAAACAGTTTATCAATAGGTGGGAAGCCGTAATCAAT
ACAAGCTTGAAAGGTGCNN Coding sequence (CDS) from alignment at sc0000047:326532..327600 >TCONS_00004710 ID=TCONS_00004710|Name=TCONS_00004710|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at sc0000047:326532..327600 (Clytia hemisphaerica)
ttattttgcaaaagttcttcTATGGATCTCTGATTCCAATTGAGATTTGA
GTCCAACTAACATTTCCAAATTGGTAACATTTGAAGTATTCTCAGTAAGA
AATACTACTGGTAGTGTTGAATCTTTTCCTACCACAACAACAGTTTGGCC
TTTCTGGTAAGCTTTTTCCACATCTGATTGAAGAGAAGCTGATAAAATTG
ATTTTCCAGTGCTTGACAACTGTTGTATTGCAGTAGTTGGCAATTGAGGA
ATAGTGTTTTTTGGTATTGGTGAGGTCGAAGCCAGATTCTGTTTAGGTGC
TGGTGTTGTTGTATGTGGTGCTGTAGTAAATGTGCTATATTTCTTTGGTT
CAGATTTATAACCTTGTGGGGGACTTGCATGGGACGACTTGAGAATTTCT
CTTGCAGCTTTACTTCCCTTTAGTGCAATCTTTCTGTCAGCTCCACCAAA
GACAAACAGGTGACCATTGCATTGCATAAACAGTTTATCAATAGGTGGGA
AGCCGTAATCAATACAAGCTTGAAAGGTGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004710-exon-sc0000047-1491911889:326532..327600 | TCONS_00004710-exon-sc0000047-1491911889:326532..327600 | Clytia hemisphaerica | exon |
| TCONS_00004710-exon-sc0000047-1510915933:326532..327600 | TCONS_00004710-exon-sc0000047-1510915933:326532..327600 | Clytia hemisphaerica | exon |
| TCONS_00004710-exon-sc0000047-1575043694:326532..327600 | TCONS_00004710-exon-sc0000047-1575043694:326532..327600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:326532..327600 . |
Blast
The following BLAST results are available for this feature:
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