|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004701 ID=TCONS_00004701|Name=TCONS_00004701|organism=Clytia hemisphaerica|type=transcript|length=443bp
cctgaACATTCTGTCCTTTCTTTCTACAAACTTTTCTTTTGGTATGGAGA
TGCCATAGTAgaaattggaTGTTACACGCGAAGAGTTGAAGCGGTTAAGT
GAATTTCATGACCCTGATACTGTGCAACTGATGGAATGGATTAAGAAAGA
AACACCAACGGACGCCGCGTTCACCGGTAGCATGCAACTGATGGCAGGTG
TCAAACTTTGCACGGACCGACCAATCACTAATCATCCGCATTACGAGAAC
AAATTCTTAAGGGAACGAACTCGAGAGGTATGTTTTATTTAATCCTAGTC
TAGCAAACTACtgtagacgactaattcagacatggtagaaataaagcaaa
aagtaatggagaaaacaattttagttatacaaactaaatcccctAACAAT
AATCtcattatcatataacgcctatactactgtagagtctgct Run BLAST on NCBI transcript from alignment at sc0000047:625003..630668- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004701 ID=TCONS_00004701|Name=TCONS_00004701|organism=Clytia hemisphaerica|type=transcript|length=5666bp|location=Sequence derived from alignment at sc0000047:625003..630668- (Clytia hemisphaerica)
CCTGAACATTCTGTCCTTTCTTTCTACAAACTTTTCTTTTGGTATGGAGA
TGCCATAGTAGGTAAATATTTATTTATTTCTTGTATGTGCAAGATACTCA
AAGCCGCTTAAAGGTCTTTAAATAAGAGTGATATTTGCTTACTCATCAAT
TTTAACTTACAAGCTTTTTAACATTGGATTGACACGGATGTTGAGCAAGA
TTGGTTTACATTTGCTTATATCAGCATAATATAACAATAGGCAGACACTG
TCCGGATATGAAATATGTGTCAATCGTGTCAATCCAATGTTAAAAAGCTT
GTAAATTAAAATTGACGAGTAAGCAAACGTTTTCTTACTCGAGTAATACT
GTACTACTGTAGACTATTTCCTCTATTTGGGTTTTTCATGGTACATGAAA
GGAGCGTAAAGAAGAACAACGGTAAAAGTAACGTGTAAGCCCGGGTGGGG
GGGGGTACCTAGGCAAGTGAAAGAAGATGGTTATTTCTCCCAACCAGGGT
AAAATAACCCTTACTGTACCTTCCAAGGGTTTATATCTATCTTGTATTCC
TTTGCATTTCAAATCTGTCCATCAAATCTGGTACAGGCTAGGTTTTATAT
CAATGAAATTATATAAGGGATACTCCAGTCTCAATTGGATGGGACTTCAA
TAATGGAGGGTTATTATTTGCCCCTTTATTGATTCATTTTTTTACACTTG
CACTCAAAATTTTATAACAAAGCTAGCATGGAAAAGCTGGGTCAATTATT
TCCGAAATATTGTCTTGATGTACAATTAAAAACAGCTGTTGAAATATTTA
TACCTCATTTAATTGACATAGTAAAATTTAATTTCATAGAATGCCCCTCG
TTTCTATTTATCACTTGCATGTTACAATTTTTCGGAACTGCAAGGGCCTT
GTTAGGTCTTAGTAAAGTTTCAATCAGATTGAAGCCTACACGTTTTTTTA
TAGGAATAAACTATATAAGAACATAAGGCTTTGATGGCCAAAATGTTAAG
AACAAGTTAAGAACATTTTAAGGTTTTGGGAACTCTAATTTCTTAGGAAA
ATGGACAAAATTGCTCAAAAATTGGTGAAAATAAGAACATTTGGAGGCTT
CAAAAATTTTGGATGTTCTTATAAAAAGAAAACGTGTATAATCAAAAATT
AAATACCATATTCCCGAGCTTAATAATCCTCAAATAAGCGCTCCGGTGCT
TTTTAGTTTTTCAAGATCGACACCTTTTTTCGAATAGCATACCGACCGTA
GAGAATCTAAAAATAGACATTGATTTTTCTGTTTGACTGATGACGCTTGC
ACGCAAAATACACTCAATTACAAAGAAAAAGTAATAACTTTCACTACTTT
CGAATTACGATGAAAAGGATTGTGGGATTGAATTTCGGTCAAATGGGGTA
AGTAATAATCAAGACGATTGGGTAACGAAGGGCTATTTTGAAATATTTAT
GTACAGAAAAACTTCCTGGTTCAAGTAGAACACATATTTTTCTAATACCG
AAGTTTTTCTTTTAGCAGTTTCAACCTATGGAAAGTAATTTTGTAACCAT
GAAACCTTGAGTTCGAAAATACCTATAGAGTGTGCTGCGTTAAAATGTGA
ATTTTATTGAAGCTTTTTTTACTCACCAGTTAATTTTAACTACATCTTCT
TTTCTTATTCTTGTGATTTTCAGGATAAAACGTTGTTAAAATGTTCTTAA
TTATACTTACTCTATTCTTTTATTGACTTTAAAGGGTCCTAAAGTTAGCA
TTTTCTGAGCTATTTCTGAAATGCAAGGCTGGGATTGTTCTAAAATTTTC
TCATGCTTTCATAGTTTAGTTGGGACTTGGAAATTTTTGGATTCTAGTGG
GAAAAATATACTCATGATAAAATAGTTCGAAGAATTAAGAATGCACTAAG
AATATCATCATCGTGAAATATGGGAACTGAATCCAAGAATACCGATTTGA
GGGCATTTGGATAGTAGTCCTTCCTATAAATGGCCAACTCCCCAAAAACA
CCATACTTTTGCTTTAGGTATGCATTACAAGTTCTATTAAGGTTAGGTTC
ATATTCTCACCTAGAAATACTATTAAGAATATTTTAGGATGGTTTGATCA
AAATCTTAACAATATTCATGATGAAAATGGAAAGCGTTCACACGTTTTTT
TATAAGAACTACAAACTATATAAGAATATAAAGCTTCGATGGCCGAAATT
TTAGAATATTTTAAGGTTTTTACCGACTCTAAAACAGCCGGTTTCTTAGA
AAAATGGGCAAAAATACTCAAAAACGGTGAAAATAAGAACATTTTAAGAA
ATTTTTTTGGCTTAAAACCCAAAAGGTTAAGAACATCCAAAGGCTTCAAA
ATTTTGAATGGTCAAAAAAGAACAAAAAAACACGTGTATTTGAAAACTCA
GTTATTGTTGTATGTATTTTCTCCCTTTGTTTTTTTTCAGAAATTGGATG
TTACACGCGAAGAGTTGAAGCGGTTAAGTGAATTTCATGACCCTGATACT
GTGCAACTGATGGAATGGATTAAGTGAGTAGTTCTTTTAAATGCCCTCTT
TATTCTTATGAGAAAAGTGTAAATAAAGAAGTCAAATATTAGCGAGTTAT
GCCGGCATTTTTCACTCCGTTTCCCGGCATTACTGCATAGAAAAAAAGCC
GTGACGTCTAAAATAGATTTGTCAAATATTGGCGCTAATTTTGGTATCCC
ATGCAATGGTTTTAAATTAGTTCACTGTTTCGATTCCATATAGTGTAGGC
GAAGAAATATCAAGTGCAATAAAGGATTGATCCAAATATTAACATATTGT
CAATCAAAGAATTTGTTTACAGAAAGAATAACAAATATACTTTTTGAAAT
ATTTTCCCAACTAAAAATTTAGACTGTCCAACTGTATATAGGAAATGCTT
TGCGGGAATACAGTCCAATTAGGTAAATAATTCCACCTTGAATATATTTT
AGACTAAAGTTAGACTATTGATTAAATAAAAGTTCCATTCAAAAAGACCT
GAATAGATCAACGGGATACCGTAAAGCCTGAGTATGGAATATCAGACTAC
TCAACCTGGTCACTTTCGCAAACAATGGCCACGGCTCCTGTGTGAGCGGT
CGGGGTTCGATTCCCTGCGAATTTTCGAAAAATTAATTAGCGGGGGGGCG
GCTATTCGGTACCCGGGAGTAAGCAAATAAGAAAGGGACAAAATTGAAAA
AGACTTTTCTCTTCTAACACAAATTTTTTTCAATGTCCGCAATGTGCCAC
GCGATGGACCATGAAGGACATCACTTGGAAAAAGAAAAGAGAAAATAATT
TTATTTTATTATTTTTTTTAATTTTTTTTTTGTTTCACTTTGAAAAATAA
AAAGTAATTCATTTTGCATTTCATTTCAATTTTTCAAGATTTAGAAAATC
TTTAAAAAACGGGTTGGCTCTAATGGGCCACCATATATGTGTCAATTCAA
TGTGAAAAAGCTCGTAAGTTAAAATCGATTAGTAAGCAAACGATACTTTT
CTTATTTAAAAACAAAACCTTTAATCAGGCTTGCTTTGGTGTTACCTTTA
TACAAAAATAGGAAAGAAAACTTTCGGGATCATATTATTATCAAAGAAAG
GGGACCCTATTTTGGTATCAATATCAACTGAGGACAATTCTTTTTTCTAC
AGCCTTAGTGGTATCAAAATTCATTTTCAGACAGTTTCCAAATGGTCTTT
GTTTTGACAGAGGAGACAGTGCCAATCAAATGCGTTTATTTCATCCCTAT
GGGTGGTACTGTTTTCTCAGCTTTACTTACGGAACGAGTTGTCAAATGTT
TGAAATGTTTAAATGTTGTTGGTGTTGTAGTGATCATTACGAACATCCAT
TTTTTGTGGGGTTACTTACTTGTATGGTATTTTATTTGTACCCGACTCCT
GTCATTTTGTTTGGGGTTTTCATCATTGTGACGTCTTACGCAAGGGTAAC
TTTAATTCGCGTTAATAACTTGAGTTGTATCGACACTAGAATGAGTTGAG
GTAATGTTTATATAAGGAAAAGAGAAAATTTTATCTCTGTAATTTTCAAA
GAAAAACATTTTGTACTTTGGAATAAACTTGTCTTTGAATTAAAACATTT
TTAACGGTAAAAAGTAAAGACAAATGTTATAAAAACTCTTTTGTAGCAAT
TTTAGGTTAATTTTATAAAATGAGATATGCGTGTTGGGCAGTCGGGAACA
CTATATGGAAAAGGCAACTATTGCCTTAATGGGAAATATTTCCCGAACGG
GACGGTGGAAAACTTCCCGAAATGGCTACAATCATCGTCGAAATATATTG
AGATTTTAGTGTATTTTAACGTTTTTCAGAATTTAAAGTTCGGGCGAGAA
TTTTGCTATTTTAGCACTTCCACTTTCTTTCATTGAATACTTCGATTTTA
GAGGGGTTATATGGCTTCTAGGCTATATTCCAAGCCTTATTCGAGCAAAT
TTGTGCTTTTAAATCCTGAAATCCTAAGGTCCTTAGCCTTAAGTCTCATG
TTGAAACCCAGAGTCAAAACCCAGAGTCAAAACCCAGAGTTAAAACCCTT
CCAAATCGGGAAGTTCACCAGTTTCCCGATCGGGAAAGTGGCCTCTGAGC
ACTTCGAAAATGCCTGTGGAAAGTTAAAAACTTATCCCTCTTGTAAAGGA
GGGAAAATAAATAATATTCACCAGGTAGTTAAGAAATCTACCGGGTAATC
GCTTCTTAATTCTATTTTCCCCATTCCCAATTAAAAACTTCCCATTTTGG
AAACTTTTCCTCGATCGGGATACAAAAATCTGCGTTGTTTATAAAAATTC
TATTTTCCGTTCCGGAACGATGAAAAATTCTTGACCAAAACGGGAAACAG
AAAAGTGATGAAATTTTCAATCTGGAAACAGTTTCCTTTTTGGGTTATTT
TCACCTTCCCGTTCGGGAAATACTTCCCGTTAATGCAATAGTTGCCTTTT
TCATGTAGTGGTACCGACTGTTGGGGGCGTGTTTCAACAGTTTCACTCGA
GAAGTCCGTTCAACGCTTTTTGTACACCAGCACATGGCATTCTCTAGCTG
TTTTGTTACCATCCCGCACATTTCATATCTGCAATAATTTATGATGGTTT
GATAAAAAAAGTTGTCATTCAAGAGTCATCTAGGGCCAACAATTTAAAAA
TCAAAATTTACTCTTGTCGGCAAATAGCACTATTTTCATTTGACGTATTC
TTAATGTCATTTAGAAATTTCTGGTCACGTGATCGAATAATATTGCATGA
AAGATAGAAGCTGGCGTTAATTGCTTTTCACGTGGTCTTCATTTAAAGCT
CAGCAATTCAAACAAAACTAGTTTTTGAATAATTTCATTATAGCTTGAAA
TTCTTCTCTCTTTTCAGGAAAGAAACACCAACGGACGCCGCGTTCACCGG
TAGCATGCAACTGATGGCAGGTGTCAAACTTTGCACGGACCGACCAATCA
CTAATCATCCGCATTACGAGAACAAATTCTTAAGGGAACGAACTCGAGAG
GTATGTTTTATTTAATCCTAGTCTAGCAAACTACTGTAGACGACTAATTC
AGACATGGTAGAAATAAAGCAAAAAGTAATGGAGAAAACAATTTTAGTTA
TACAAACTAAATCCCCTAACAATAATCTCATTATCATATAACGCCTATAC
TACTGTAGAGTCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004701-exon-sc0000047-1575043694:630608..630668 | TCONS_00004701-exon-sc0000047-1575043694:630608..630668 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1575043694:628146..628228 | TCONS_00004701-exon-sc0000047-1575043694:628146..628228 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1575043694:625003..625301 | TCONS_00004701-exon-sc0000047-1575043694:625003..625301 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1510915933:630608..630668 | TCONS_00004701-exon-sc0000047-1510915933:630608..630668 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1510915933:628146..628228 | TCONS_00004701-exon-sc0000047-1510915933:628146..628228 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1510915933:625003..625301 | TCONS_00004701-exon-sc0000047-1510915933:625003..625301 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1491911889:630608..630668 | TCONS_00004701-exon-sc0000047-1491911889:630608..630668 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1491911889:628146..628228 | TCONS_00004701-exon-sc0000047-1491911889:628146..628228 | Clytia hemisphaerica | exon |
| TCONS_00004701-exon-sc0000047-1491911889:625003..625301 | TCONS_00004701-exon-sc0000047-1491911889:625003..625301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:625003..630668 - |
Blast
BLAST of TCONS_00004701 vs. Swiss-Prot (Human)
Match: D19L3 (Probable C-mannosyltransferase DPY19L3 OS=Homo sapiens GN=DPY19L3 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.484e-26 Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 2
Query: 80 EELKRLSEFHDPDTVQLMEWIKKETPTDAAFTGSMQLMAGVKLCTDRPITNHPHYENKFLRERTREV 280
+EL L EF+DPDTV+LM WI TP A F GSMQL+AGVKLCT R +TNHPHYE+ LRERTR V
Sbjct: 545 DELSELREFYDPDTVELMNWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDSSLRERTRAV 611
The following BLAST results are available for this feature:
|
