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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004700 ID=TCONS_00004700|Name=TCONS_00004700|organism=Clytia hemisphaerica|type=transcript|length=1642bp
ACTCAGTCCAGCTCAGTCGGTCTCTTTGGCTCTTGTTATTTTTTCGTATA
GCAAAATTACTTCAAGCTGAACCCGACTAGACAGACACTCACCGACAACC
GGAAATACTTCACTACCAACTACCCTACGGATCCACATGACTGGCCCCCA
CAGACTGACAGAGACTTCAACAATACTGATTGGAAAAGAACCGAAAGATA
ACAGAAGATAGGCCCATTACAATTCGCAAACTATGGAGAAGAAACTGGAT
CGAATGATCAATGAATCACAGGAACTATTGGAAAGAGCGCGTACGCTGAA
TCAAATCCCTGGAGCATCAAAACTGGAACGGAAAATCAACGCCGAGCTAA
AATGCCTtatgaaattcaaaaagaaaccACCAAATTCTTTAGAAAACCAT
TTGAAAAgtacaaatttgaccaatttacGTGCTGTATTACGTGCTGTAGA
GAATTCACCTGATGTCGAATGTGTTTTATCAACTTTCTATTACGAGCTTG
ATGATATCGGTGACCAGCTTGTTGTAGATGCTGTTGTGACTGGTGGTTAC
AAATGGATCAAAGTGGTTGCCAGGAAACCGTTAGCTGTCCATCGTATCAT
GATCGGGGAAGGACAATACGGTGATAAAGACATTGTTCGCGTCGCGAGAG
ACTACATCGCAGCTAGTGATCAAAATCCAATCAACTACGAATCCCCTAgt
atttgttttttgtttccAAAGGGTTTGACACAGACTGTATATGATAATTT
GAAGATTACTGGTGTGTACACTATCGGGAAAGTTCTTCCCGACCCTGATT
ATGAGAATCTAGAAGCGTGGAATGAGTTGCAAGACGAAACTGCGATGAGT
GATATCACCAAATTGTTGAGTGATTTCACCATACGTTGTACTCGTGTTAA
TTTAGATATCACAACTCTTATTGTTCTAACATCGAACTTAACGAACGGTT
ATTGTCGATATATTTTTAAAGAGGATATTTTGACTAAACAAGCAGCAAAC
GAAGCTGCAAATCCTGCTTTACCAGAACTATTGAAATATTTGGAAGGTAA
AGAACTTGTTTGTTGTCAAACTGCTTATaataattttcaagaaatcttGA
AAACGGTCGGTGGTACCATGGAAAAAGGGAGAGCTAAGGAACTGTTTGAT
CGTGTTACCTTAATACCGGACGATCCAGCTTTCTATGCAATGGAGCTTGA
CGAAAGCGCTAGCATTAAAGAaagatcaaaaatcattttcggCACTGGAG
AAACGAATCAAGCTATTACAACAACTGCAAATACTGCTTTTGTTCGAGCA
GCTGTTAATCAAGGAATTAAATTTAGCTCTTATTTCCACGCCTCTCGCGC
TTTGACTGAGCAGAAACAAGCAAAAGCAACTCCTATTGAATAGAATTTTA
TATGCATATTTTCATActgtttgtagtttttttcCTCGTTTTTTTATTGA
TAGTGTTGCAGTTTTATGTTGTTTTGGTCAGctttgcaatgaattttgat
atgttCCTACACGAGTTTGCGTTCTATACgttttaattttctattttttt
aaacGAAAAAATGTAATAAGACTAATATTCAAAAACAACTTTGCAAACAT
CATTAAATAGTGCCACCTTTGGGTTATTTTACAGGTCTAGTT Run BLAST on NCBI protein sequence of TCONS_00004700-protein >TCONS_00004700-protein ID=TCONS_00004700-protein|Name=TCONS_00004700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MEKKLDRMINESQELLERARTLNQIPGASKLERKINAELKCLMKFKKKPP
NSLENHLKSTNLTNLRAVLRAVENSPDVECVLSTFYYELDDIGDQLVVDA
VVTGGYKWIKVVARKPLAVHRIMIGEGQYGDKDIVRVARDYIAASDQNPI
NYESPSICFLFPKGLTQTVYDNLKITGVYTIGKVLPDPDYENLEAWNELQ
DETAMSDITKLLSDFTIRCTRVNLDITTLIVLTSNLTNGYCRYIFKEDIL
TKQAANEAANPALPELLKYLEGKELVCCQTAYNNFQEILKTVGGTMEKGR
AKELFDRVTLIPDDPAFYAMELDESASIKERSKIIFGTGETNQAITTTAN
TAFVRAAVNQGIKFSSYFHASRALTEQKQAKATPIE Run BLAST on NCBI transcript from alignment at sc0000047:604477..613673- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004700 ID=TCONS_00004700|Name=TCONS_00004700|organism=Clytia hemisphaerica|type=transcript|length=9197bp|location=Sequence derived from alignment at sc0000047:604477..613673- (Clytia hemisphaerica)
ACTCAGTCCAGCTCAGTCGGTCTCTTTGGCTCTTGTTATTTTTTCGTATA
GCAAAATTACTTCAAGCTGAACCCGACTAGACAGACACTCACCGACAACC
GGAAATACTTCACTACCAACTACCCTACGGATCCACATGACTGGCCCCCA
CAGACTGACAGAGACTTCAACAATACTGATTGGAAAAGAACCGAAAGATA
ACAGAAGATAGGTGAAACACCATTTTTTTTAAACTATAGGGAAGCTAGGT
TCTTTGCATGATAATTTTTTATTTCATTTTCAGGTTATTTTTGGGCCAAA
ATGGCAAAACATTCTTTTGACCCAAAACAACATATTTGTCAGTCTGGGAA
ATCCTCTCAATTGCACGCTTATGTTCCGAGGCCGTAAGCGCGCAATTACA
CGGTTATCAAAATGGCAGAATTTTTAAGCGTGTAATTACACGCTTATCGA
AATTGTTCTGAAACAGGCGGTAAGCGTTTAAGCAAGATTGACGGGTGACA
GCCGCACAAGTGTTACGCGTAAGCCAAATCGCGTATTACGAACAACCTCT
AAATTGCCGAGTACAGGAGAAAAAAAATCGAAATTCAAAATGGCGGCCAA
GCCCACGCTGATAACTATCAAAAATCTTCGTTTTTCAATCAGCTATCAGT
TAGTCACACTAGGAAATCTAGCTTTCAGAAAAAACAACATCAGTCATCTA
CAGGATGTATTTTGCACAACAAGGATGAGGGTTACCTGAATCAAGTTCGC
AAGACAATTAATTAAAACTTGAAAGTTTGAAACAAAATAAAACGTGCAGC
AGCCAAAATCAACCAACCAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGG
ATGGTCACGTGACCAGAATTTTTATCCAGGGAAATGCCGTGGCCGCAATG
TTTTGCTTTAGTGAGATTGACCATTTTGTTGTTTAGATTTGAGTGGGCGA
AATTTCTGTACAAACCAAAATATGGCTTCGTTGGAATACCGGTTGAAACA
CTTGTGGCCGGGTGACGGCTTTTGCGGTAAGCGTGCAACTGCACGCTTTA
AAATTTCCTATATTTTTGACACGCAATTCCTTCCAAAAGCTCTGTTGAAT
TTCAAAAGCCTAGGGCAGTTTTACTCAAAATTTATTGTAGAAGAAGATTC
CATAAAAATGGATTGCCCGTTAAACCANGAAACAGCCTATCCGTTGGTGC
GCGGATCTAGGTGGGTTCCGCCTCCCCCGTAGATCTTTTTCTTGGGAAGT
TGATCTTCAAATTAGTTTGAAGGTTGGCTTGGCTCAAATTTTTTCATCTA
TGGCTTAAATTTTAGGCAATTTCTCATAGTTTTTGAAAATGTTAATTTCA
TTAAAGAGCGCCGGGTTATTTTTTCATGAATCCCTTTAGAAGTTTTGCGG
CGCATTTCTCTGCTTGAGAGTCAAGTAAACGATATGGCGCTTTTGCAGCA
TTAATCTTTGATACGCATTTTGGCGGGAAGCTAGTGTGACTAACTGGCTA
TTGCAGCTCAATAAATCAATGAAATAATTTGAAATAAAAAGTAAACAAAC
CTTGAACCTTTCATGAATCCAAATAAATAAAGGTATTCNTTGAACCCCTT
GAAATCCCTAAGCAATTTCAACCGGGGCTGGAGCGGGCGTAAATTATAAC
CATGCAATTGCGCGCTTACGCCCTCGGAACATAAGCGTGCATTGAGAGGA
TTTCCCAGACTGTTTGTGTTCAGTATCAGAATCAGGCCACACACGCACCG
GACATTCCGATGTTTTGTCTGGTGCTGAAAAACTTGAAACCTTTGGTCCA
GCGTTAGTCCAGTGCAGTCAGGACCTATTTGGTCTTTTTTAACATTAGTT
CGGATAGAATAAAAACATACCTGATCAACACAACCAAACCTTCTGTCTTG
CGTTCACTTCCTTCACAACAACTTTCGTTTTTGCTTATGTAGGTTTTAAA
ATCCACAAGTAATGAACCTCTTATAGCTTTATCTGAATAAATCTGGTTGA
AAACCTTCTATCAGGTTTCATTCCTTACGTTTTTTATTCACGTGGTGAAC
CAGTTTCCCCGATTTCCCGATAATTAAAAATTGGAACTTTCCCGTGGGCG
CGATTGGGCTTACCGCCGTCGCGAAATATTTTTCGTGAAAATTTACCGTA
TTCTAACGCTAATATAATCTAGATAGGAAACAAATATTAAATTTGATCTT
TTTTTGCTCGTATTTCTAAATTTCAAGATAAAAAGAACTATCTATGAATT
ATTTTCTTTAACGGGTGTTGAATCGACATTGACATATTTAATGATGTCAT
AATCAATACCGTGCATATTTTGTCAACATCCTTTTCATTGGATAAATACC
ACTAAAATATACAAAGATAAGTAAACATAAATGTATCGCCCGCGAGCACG
GCTTAGCTAAGCGCACCTCTCTTATTCATTATCTAAGAATTGAAGCGGGC
AAAGATTACCGCGCAGCTGATAGCGGACGAAGGTTTTTTTGAAGATATTT
TCAGTTATAATCCAAGGTAGAACAAACTAAACATAGAAAGGGGGTATTTT
TTAGTGCTTTATACGATGATCGCTATATTTTTTGAATTCTATGTTTAGAT
TTTTCTACCCAGCCCTGTTGCTATGTACGCGCGCCCTGTTGCAAAGACAT
TTGCTTGAAATCGAAAGCGAAACCGAGATTATTTAGCGCACACTGCCGTT
TGCGTAATATCGATAAAGTGAAATGAGGTCCTGACTGGTCCAGTGTTAAT
TTTTAGAACTTCTGGACACCAGGACGCACCAGATCCCTGGAAACTCAAGT
CTGGTGTTTAGGATTGGGCCATTTCAGAATTAGTCCTAAAAATAGACCTA
ATCGGCCAATCAGAAGCGTTTCAACAAAAAATTGTAGAAATTTTTGTCCA
AAACTGCCCGTCTACTATCGAGTTCAGAAAAAATCGTAAGTAGACGGGGT
CCTAGCCTGGGAATCCAAGCTCATAATTTTAGAAAAAACAAAAAATACCT
CACCTCACAAAGTTCTAAAATTATAGAGCTTGGTGCAGGTAGATTAGTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGAATGTTATAAACAGTCTGTGTGTGAACCCTTG
TTGACAGAGTTTCTGAACTTTGGAAACCCAGGCAAACACACATAATCAAC
TTACCATAAAACTCCTCAACAATCTATAAAGACTTTCAAAGCTACTAAAA
ACCAAATAAAAACATCAGCCACATGTATTTAGACTTCCAGCCAACAGCCA
TTTTGTTTTGAAATGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTATTTGTTTTCCTTTTTTCTGCAGAGTCAGCTTTTTC
CATAAATTATGCGCGCGCATCGAAATAATCAAAATGCGCGCAAAAGTACT
GCTAAGTAATACGCCGAAAGCTGGCCAATCAGGCTGAACCTGCATTGCAG
GGAAAAATCTCCCTGCAGGCGAGTTACCTGCGCCAAGCGTTAAACCAGCA
GCAAAAATATCATAAACTAGACTCTGAAAAAAGTTTAACGCTTGGATTCC
CAGGCTAACGGGGTCCCATCTATTCCAGAATTTGTCTGTAACAGGGGGGC
GGACGACACAGGATTTCACCATCAAAATTCAAAATTTCCAAGGTGAGAGA
AGAAAATGTATGAATTTCCAAGGCAATTGAACTGAAACTTGAAAAGACAA
AATAGAGTGGAATTTCCGATGCATTTTGCAAAAGTACATAGATTTTCATC
AGAATTTCCGACTACCACTGGAAAAGAAAAATTATTTCCGAGGCTAGAAA
AAATTAAAAAATGCACGTCGTCCGACGGGGGTATACAGAAATTTTCTGGA
ATGGCCCATTGTTGTCCGGTCCCGGACACGGTGGCGTGGGAGAGGGTATA
GCACCCTAAGTTCCCTGGGAGAGGCACTTAGGCAAAAATGGTTTCCGATA
GAGTTCGGCCATCAATGGGGGGTTTGTACTTTTACGGTGTGACGGGATTG
GCCCTTTTTTAGTATGGTATTACGGGATTTAACGAAAAAAGTGACAAGAA
AACGGAATTTTAAAATCAGACAGTGACGGTATATAGCCTTATTTTTGTCA
TTATGCCGATATTTTAACCTCTATATACAACCCGGTGAAACGGTGTTATT
ATTTTTTTCAATTTTCAGGATTCCGGGATTGAGCAAAAATTGTGACGGGA
AAACGATATTTCAGACCCCTACAAACCAGTGCCCCCCCCCCCCCGGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAAACATGGGACTGTTTGATATCTGGCCTAAAACTCAACATGATA
CCTAGCCCAAAACTCAACATCCTTACAAAAGTTGTCTTTCTGATTTCCCA
AACATTTGTTTCAAGCGTTCACTTCCACAATAATTTATGTATATATTTAC
TATTTTGGTCAGTCGGATTCACAACATATACGCGGTTTTTAGTCACGCGA
CTGAAGTGCCTACTAAGTGGGGGGCGTACGATATTTTGTAATTGCGGAAA
TCGACCCTTTTTCCTTCGGAATTTCGGAAATTGGGCACAATTCCTTCGGT
ATTTCGGAATGCTGAAATTGTTTCTGTACCGGAAATCCATGAATTTTTGC
TTCGGAATTTCGGTATTATAAAGTTTTTATCCCCCTTTTTTCGGAATTCA
TGCATGAAAAATCAAATTTGATGAAAAATTAGTGAAAACAAGGATAATAA
CACAAAAAAATCGGTATTGGAATTGCAAGTACTTTTTTACGGAATCTTGG
AAATTTTAGCAAAATTATTAGATATTTCGGAAATTGCAAACCCTGTACGC
CCCCCTACTAAAACAATCCAGGGGTAAGAATCAAAGCAACACATCAGGTT
ATTCGTAATCCAGCGTAAACTGTTTGATATCTGGCCTTTATTTTCACTTA
TAAATCTCTTTGATAACAAATATTTTTTGATAACTCCACCAAGTTTATCA
ATCTCATGTTAAAGGCAACCCGAAGACTCCCCTTTCTCTAGCTCCTCTTT
CTCTTGCTCTAGGTAGACAGTATAGACCTAACTCTTCATACAAAAATTAC
GGGAAACCATGGCGTTCTAAATTGCAAAAAAAACGCCACATAGAAGATCT
TTCAGTAAAAAAATACAACTTTTCTATTTTTCTTTTTTTTTTGTAAAAGT
TCTAGGAATGAAAATAAAAGGATAATGATAATTGAATTACTATCCACTGA
TGATCCGCGGCGCCATCTTAAGGCTAGAATCGCTTCGCGTACTCCTCGTT
TGAGAAAATGATTGACTGATTAAATTTTTCACCCGCGCAGGAGTTCGCGG
GCATTCTGCGAGCGTTCTGCAAGCGTTCCCGGCTCAATCCTCGTCTCAAT
CCTCAGGCTGTGTTAAAAATGGTAGACTCAGCTGTGACAGATCATTTCGA
TGGCAGTTGTTGAAGTAATTACAAGACTCTTGACAGAAAATCTTTTGTTT
TATTGTCAATGCAGTGCCGTTATTAATTTTGTTAGATCTGATATATTGAT
GTTTGTAAGTGCACTTTATAGTTTTGATTCCCTTTGAAGAATCATATTCT
GGTTTTCATGTTCTTAGATGCTGTTTTAGAGCTTTAGAGCTAGCCTGGTA
GGAGAGGACGCAACTACTTTCCCTGGATTTCTCCACTTACTCTGTAACGT
TATCCATTTCCTAGTTCCTGAGCATCAAGCAGAGAGGTATTAAGTACCAT
TTTGGGAATCTTTGGTATGACCCGGCTAGGGGCTGAACCCACGACCTTCC
ACATCGTATGTGGATGCTTTTCCTTCATGCTACAGCTACAAGACTAAACT
GCCTGAAAGCTGTTAAGAAAATTATTTATCCTTTGTTGATGACCCCTAGG
CTTTAGTGGCTAGAACTCGCACTAACACTTAGCATTTTTGCCAGGATTTA
TGTTCTCCTTGTCTTTCCGCCGCTGAAAACATAAAACAACCAGTCAAAGA
ATTGTAGCTAAACTGTAGCTAGCCTCCAGAAATGTTTTCAAAACCCTAGA
TTCGACCTTGGCATGCTAGCACTAAACTACCTAGTCACTGCAGAAAATGG
AATATTCTAAAATATTTGTAAAGAGAAAAACTTTCTCCTGCATGAAAATT
TTCTTCTTAAATTGTATGCTTTTTGGGGATTTTCTCTCGCTTTCTCCAAA
TTTAATTTCAACATTTTTTACATTTTGCCTTGCATCTTGAAAAAATTCCA
AGGTAAAAATCAAATTACACCTGAAAATTAGCTCAATTACCCGTTTTTTG
AATCAGGTATTAGGACTTAAACATAACAAAATTTTTATTATTATTCTCAA
GATGATGTCAGGGCAATAATAAGATATGACAAAATGATAGTCAAATATGA
CAGGAGGCTGTTTAAGACAAAGAGGATTAGTTTTTAACACAGTTTTTTTG
TATAACATTATATCTGTCTCTGCAATTTTGAGCAATTTCCAATATTGTTA
GTGTAAAATTAAGAAAGTTTTTGACCAAGAAGTGCTCAAGAATGTTAAAA
ATGTTTTTTGATAATATTCTGAAAAAAAATCTCTCAGCACTTTGCCAGAA
AATTGTGAAAATCAGCCTCTCATAATTGTTGAACATGTTTAAAAATCACG
AGAAATCGCTGCAAAAAAGCAATTTTTATGGCAGAAAAACTTAGGGTATG
AATGTTTAAAAGTGTAACTGTGAACAGCTGTGAAGAGTCATTTTTATTTT
CTGGCTGTATTTCATTTTTGGAACCTAGACTTTCATAATATTTCCTAACA
TTGTAAATCGGCTGATGTTTGACCTGATTTATGACCTATGATTTATTGTC
TACCAGATGTTTCTTATTTGATATTTTTGTTCAAAGTTGTGTTTATTTTG
AGAATGATGTGTTGAGTGAACAAAATTGCTGTGACAATCATTCTCTCAAA
ATTCAATAGTTGCAGTCAAGCCACATAATCATGTTTTTCTTAAAACAGAC
CTCGTAATTCGAAATTTCAAATTGACATCCAACAAGACCCTGAAATTTCC
ACATATTCCTCACATAATTAATTAAATCAGCCAATTTCTGAGAAAGCCAT
TTCTTCGCTTCTTCTGGATTCTGCTCCTATAGACCATATCTCAAATGCCT
GATGAACGCTCCTCGTCAATTTATTTTCGAAAATATACAGCTATTCAAGA
CAAGTAGTTCATATTTAAAAAAGTACGAAAGAAATTCCGAATAGTGAATT
CATCATCATAATCTTGATCAGGAAAATAGGCTATATTTCTATATATCGAG
TATAACCTCACTCATCTTTCAGGATTGTAAAATGAAAAATTACAAACTTG
CTACTTCTGTCTAAAAATGGAAAAAATGCGCTAATTCCTAGTTCAAGTTC
ACCTATTTATGCTCTGAAAGCGAGATATAATAATGGGTCAGTTGCCTTAA
CAACAGAATCTCATTCTGATAGAGTGAATATTAATTTATTAATTGAGAAT
TTCTTGTTTTGCTCAGGCCCATTACAATTCGCAAACTATGGAGAAGAAAC
TGGATCGAATGATCAATGAATCACAGGAACTATTGGAAAGAGCGCGTACG
CTGAATCAAATCCCTGGAGCATCAAAACTGGAACGGAAAATCAACGCCGA
GCTAAAATGCCTTATGAAATTCAAAAAGAAACCACCAAATTCTTTAGAAA
ACCATTTGAAAAGTACAAATTTGACCAATTTACGTGCTGTATTACGTGCT
GTAGAGAATTCACCTGATGTCGAATGTGTTTTATCAACTTTCTATTACGA
GCTTGATGATATCGGTGACCAGCTTGTTGTAGATGCTGTTGTGACTGGTG
GTTACAAATGGATCAAAGTGGTTGCCAGGAAACCGTTAGCTGTCCATCGT
ATCATGATCGGGGAAGGACAATACGGTGATAAAGACATTGTTCGCGTCGC
GAGAGACTACATCGCAGCTAGTGATCAAAATCCAATCAACTACGAATCCC
CTAGTATTTGTTTTTTGTTTCCAAAGGGTTTGACACAGACTGTATATGAT
AATTTGAAGATTACTGGTGTGTACACTATCGGGAAAGTTCTTCCCGACCC
TGATTATGAGAATCTAGAAGCGTGGAATGAGTTGCAAGACGAAACTGCGA
TGAGTGATATCACCAAATTGTTGAGTGATTTCACCATACGTTGTACTCGT
GTTAATTTAGATATCACAACTCTTATTGTTCTAACATCGAACTTAACGAA
CGGTTATTGTCGATATATTTTTAAAGAGGATATTTTGACTAAACAAGCAG
CAAACGAAGCTGCAAATCCTGCTTTACCAGAACTATTGAAATATTTGGAA
GGTAAAGAACTTGTTTGTTGTCAAACTGCTTATAATAATTTTCAAGAAAT
CTTGAAAACGGTCGGTGGTACCATGGAAAAAGGGAGAGCTAAGGAACTGT
TTGATCGTGTTACCTTAATACCGGACGATCCAGCTTTCTATGCAATGGAG
CTTGACGAAAGCGCTAGCATTAAAGAAAGATCAAAAATCATTTTCGGCAC
TGGAGAAACGAATCAAGCTATTACAACAACTGCAAATACTGCTTTTGTTC
GAGCAGCTGTTAATCAAGGAATTAAATTTAGCTCTTATTTCCACGCCTCT
CGCGCTTTGACTGAGCAGAAACAAGCAAAAGCAACTCCTATTGAATAGAA
TTTTATATGCATATTTTCATACTGTTTGTAGTTTTTTTCCTCGTTTTTTT
ATTGATAGTGTTGCAGTTTTATGTTGTTTTGGTCAGCTTTGCAATGAATT
TTGATATGTTCCTACACGAGTTTGCGTTCTATACGTTTTAATTTTCTATT
TTTTTAAACGAAAAAATGTAATAAGACTAATATTCAAAAACAACTTTGCA
AACATCATTAAATAGTGCCACCTTTGGGTTATTTTACAGGTCTAGTT Coding sequence (CDS) from alignment at sc0000047:604477..613673- >TCONS_00004700 ID=TCONS_00004700|Name=TCONS_00004700|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0000047:604477..613673- (Clytia hemisphaerica)
ATGGAGAAGAAACTGGATCGAATGATCAATGAATCACAGGAACTATTGGA
AAGAGCGCGTACGCTGAATCAAATCCCTGGAGCATCAAAACTGGAACGGA
AAATCAACGCCGAGCTAAAATGCCTTATGAAATTCAAAAAGAAACCACCA
AATTCTTTAGAAAACCATTTGAAAAGTACAAATTTGACCAATTTACGTGC
TGTATTACGTGCTGTAGAGAATTCACCTGATGTCGAATGTGTTTTATCAA
CTTTCTATTACGAGCTTGATGATATCGGTGACCAGCTTGTTGTAGATGCT
GTTGTGACTGGTGGTTACAAATGGATCAAAGTGGTTGCCAGGAAACCGTT
AGCTGTCCATCGTATCATGATCGGGGAAGGACAATACGGTGATAAAGACA
TTGTTCGCGTCGCGAGAGACTACATCGCAGCTAGTGATCAAAATCCAATC
AACTACGAATCCCCTAGTATTTGTTTTTTGTTTCCAAAGGGTTTGACACA
GACTGTATATGATAATTTGAAGATTACTGGTGTGTACACTATCGGGAAAG
TTCTTCCCGACCCTGATTATGAGAATCTAGAAGCGTGGAATGAGTTGCAA
GACGAAACTGCGATGAGTGATATCACCAAATTGTTGAGTGATTTCACCAT
ACGTTGTACTCGTGTTAATTTAGATATCACAACTCTTATTGTTCTAACAT
CGAACTTAACGAACGGTTATTGTCGATATATTTTTAAAGAGGATATTTTG
ACTAAACAAGCAGCAAACGAAGCTGCAAATCCTGCTTTACCAGAACTATT
GAAATATTTGGAAGGTAAAGAACTTGTTTGTTGTCAAACTGCTTATAATA
ATTTTCAAGAAATCTTGAAAACGGTCGGTGGTACCATGGAAAAAGGGAGA
GCTAAGGAACTGTTTGATCGTGTTACCTTAATACCGGACGATCCAGCTTT
CTATGCAATGGAGCTTGACGAAAGCGCTAGCATTAAAGAAAGATCAAAAA
TCATTTTCGGCACTGGAGAAACGAATCAAGCTATTACAACAACTGCAAAT
ACTGCTTTTGTTCGAGCAGCTGTTAATCAAGGAATTAAATTTAGCTCTTA
TTTCCACGCCTCTCGCGCTTTGACTGAGCAGAAACAAGCAAAAGCAACTC
CTATTGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004700-exon-sc0000047-1575043694:613463..613673 | TCONS_00004700-exon-sc0000047-1575043694:613463..613673 | Clytia hemisphaerica | exon |
| TCONS_00004700-exon-sc0000047-1575043694:604477..605907 | TCONS_00004700-exon-sc0000047-1575043694:604477..605907 | Clytia hemisphaerica | exon |
| TCONS_00004700-exon-sc0000047-1510915933:613463..613673 | TCONS_00004700-exon-sc0000047-1510915933:613463..613673 | Clytia hemisphaerica | exon |
| TCONS_00004700-exon-sc0000047-1510915933:604477..605907 | TCONS_00004700-exon-sc0000047-1510915933:604477..605907 | Clytia hemisphaerica | exon |
| TCONS_00004700-exon-sc0000047-1491911889:613463..613673 | TCONS_00004700-exon-sc0000047-1491911889:613463..613673 | Clytia hemisphaerica | exon |
| TCONS_00004700-exon-sc0000047-1491911889:604477..605907 | TCONS_00004700-exon-sc0000047-1491911889:604477..605907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:604477..613673 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010733 | DUF1308 |
Blast
BLAST of TCONS_00004700 vs. Swiss-Prot (Human)
Match: CG025 (UPF0415 protein C7orf25 OS=Homo sapiens GN=C7orf25 PE=1 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 9.848e-83 Identity = 167/401 (41.65%), Postives = 237/401 (59.10%), Query Frame = 2
Query: 266 SQELLERARTLNQ-----IPGASKLERKINAELKCLMKFKKKPPNSLENHLKSTNLTNLRAVLRAVENSPDVECVLSTFYYELDDIGDQ--LVVDAVVTGGYKWIKVVARKPLAVHRIMIGEGQYGDKDIVRVARDYIAASDQNPINYESPSICFLFPKGLTQTVYDNLKITGVYTIGKVLPDPDYENLEAWNELQDETAMSD--------ITKLLSDFTIR------------CTRVNLDITTLIVLTSNLTNGYCRYIFKEDILTKQXXXXXXXXXXXXXXKYLEGKELVCCQTAYNNFQEILKTVGGTMEKGRAKELFDRVTLIPDDPAFYAMELDESASIKERSKIIFGTGEXXXXXXXXXXXXFVRAAVNQGIKFSSYFHASRALTEQKQAKATPI 1387
++EL++RA +L++ I G +KL K+ AELK L K + E+HL+STNLT+LRA++ + EN +V VL F Y D +G++ LVVD V GG+ W+K + RK A+H I +G GQYGDK I+ A D++ AS Q P+ Y +P I F F ++ + + LK G+ G ++ L+ ELQ + SD +T++ + + C RVNLDITTLI S L+ G C +IFKE +LT+QA E LP+L +++ KEL C++A +FQ IL T+GG E+ RA L R+ ++PD P+ A+ L S+ I RS IFGTG+T +AIT TAN+ FVRAA NQG+KFS + H RALTE K+A ATP+
Sbjct: 14 AKELIKRAESLSRSRKGGIEGGAKLCSKLKAELKFLQKVEAGKVAIKESHLQSTNLTHLRAIVESAENLEEVVSVLHVFGY-TDTLGEKQTLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASHQQPVQYSNPHIIFAFYNSVSSPMAEKLKEMGISVRGDIVAVNAL--LDHPEELQPSESESDDEGPELLQVTRVDRENILASVAFPTEIKVDVCKRVNLDITTLITYVSALSYGGCHFIFKEKVLTEQAEQERKEQVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERATVLIKRINVVPDQPSERALRLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSVFIHQPRALTESKEALATPL 411
The following BLAST results are available for this feature:
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