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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004679 ID=TCONS_00004679|Name=TCONS_00004679|organism=Clytia hemisphaerica|type=transcript|length=934bp
TTCAGAGAGCTAAAGAGTAAAAATATCCATTTTAAAGAGAATTAAAATCA
CTAAATATTAACACACATATGGAAATTTCAACAGATACTTCAGTACCTAA
ACCACAAAAGGTCCGAGATGTCAAATGTTTTGTGTGCAGTGGCGATTCAC
CCAAGTACCATTGTCCAAGATGTGGTGTCCATTATTGTTCACTGGTTTGT
TATAAGGATTCAAAACATGAAAGTTGTTCGGAAGCTTTCTATAAAGAACA
GGTTATGGAAGAGCTGAAAAACATGAAAGGCTCTAAAGAAGATAAAATGA
AGATGTTAAAAATgctacaaaaacaacaacatgaaCAACAACAAAACGAG
TCATGTGATGATAATCTAAGCCAACGATTGGCTGGAATTCACATGGACGA
CCATGAAGGATTATGGGAGAATttgagtgaagaagaaaaacactTGTTCA
ATGAACGCCTGAGAACAGGAAATGTTGATTTCTTAATCACCTGGAAACCT
TGGTGGAAACGGGGAAGCCGGACTCAAAAACTACCAAAGTTGTTTCCAGA
GTTTGAGACATGTCAGCAACTTCTAAACGAATGAGAAACTGGTCAGGGAG
TCTGGAAAAGAACTTTTGAAGTTGTACAAAGTGAAACAGAAAGATCGGCT
TGACTTTAACGAACACGTGCAAGATATTGAAAAACATAAACATCATTTGA
AACCCAAAGTCGCCGGACATAAAAACGATGGAGCAAACGTTTTAATCGAA
GAGCTGTAACCTGCTACGGTAATTTTCACTGTAAAAATGAGAATCAATAA
ATATAAATTGCATTTTAATTCTAATTGCATTTTAGTTTAAACGATAGATG
ATGAACGTTCTTCATAGATAATATCAGTTTACTATACTGTGTTAGCGAAT
TACATGTTATGACAAATTTGTTATAATaaatttt Run BLAST on NCBI transcript from alignment at sc0000047:318600..325584- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004679 ID=TCONS_00004679|Name=TCONS_00004679|organism=Clytia hemisphaerica|type=transcript|length=6985bp|location=Sequence derived from alignment at sc0000047:318600..325584- (Clytia hemisphaerica)
TTCAGAGAGCTAAAGAGTAAAAATATCCATTTTAAAGAGAATTAAAATCA
CTAAATATTAACACACATATGGAAATTTCAACAGATACTTCAGTACCTAA
ACCACAAAAGGTCCGAGATGTCAAATGTTTTGTGTGCAGTGGCGATTCAC
CCAAGTACCATTGTCCAAGATGTGGTGTCCATTATTGTTCACTGGTTTGT
TATAAGGATTCAAAACATGAAAGTTGTTCGGAAGCTTTCTATAAAGAACA
GGTAGGATAATTCTCAGGTGCCAAATTAACGGAGGGGGATTCTCAAATAT
TAATACATAGGGGAGGTGTCTAATTGCCTGGGGATTGAAAATTGTATCTT
ATAAAGTACCCCCCCCCCAAAAAAAAAAAAAAAAAAAGGAAATAAGAAGG
CGATTATGGACCAGAATTTACCAGTATTTACCACAAAAATGTCTCTTTTT
TGACGACTGAAAATATTTTCAAAAATTCATAAATATGATGGTCCTAATAA
GGTCGGAGGCAGGGGGGTCATACACAGTTGGTACCAGACATCATGAAAAA
CATCATAACTGAAAAATTGAAAATTTGGAAGCCCACCACCCCTCAGCAGT
TAGTACCCAAAAGTAAAGTGTATTTGACTATTGACAGGATGACACCCCTC
CTATTCGCACTTAGTAGCCCAAAGTACTAAGTGCATTTAACTATTCGCAG
GTCGACACCGCCCCTATTTGCACTTAATACCCCGAAGTACTAAGTGCATT
TGACTATTGGCTGGTTGACACCACCCCCTTTTCTGCCCTCGGTTAGTGGT
CTGTAGTGACTGACACTCAAGAGTTGGAACCCTTGGCAGCTATATTTGAT
TTATACCCACAAGGTACAAATTTTTTTTATAAGCAGCTCCATTTTTCGGG
TCAGGGCTGGGATTGTTTAGCATTCTAGCTCATTTTCTGAAAAATTGCTT
GACCACCCCTGATATCATACCATAATTATACTAAGTGGATCAAGGGCTAT
CGTTTCTCATGCTTAGATTATCTAAAAAGCTTTTACTTTACGAGATAGTG
AAAAAAATTAGCTAATTTCAGGACTCGAGCCTTGCTTATTTAAAAAAAAT
GTGTACTAACTACAAATTCCAATAATCAAATATCACCCACACGTCTTGAT
GTCTGGTACCGGCTGCATGAACTCCCTGCCGGGGGTTGGAAAATATCGAA
AAATTAACAAGCAGGGCAGGGGGGCTGTTTGTTAACAACCAAAGTGTACC
CAACCTGTGCAACGTCTGCTTCGTTTGGTTCAAAATTACATGGTTGTTTT
GATATTAAATATCAAAATAACCAGGAAATTTTCACCAATCAGAACGATTT
GAAGGTTAAGAAAATTTCCTGAAAGTTAGGCTGGTTCATGACGAGTTGAG
CTAAGCAAGCGGGATTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTCC
TTTAAATTAACCCATGTTTGTCCGTCCGTCCGTTCGTTCGTCTGTTACCA
ACTTTTCTCGAGATTGGCTCATTAATTTTTTCTGCTTTTAGGCACAATGA
TGCAAAATGATGATTCCTAAAAAGTGACGGAGCCCGATTTTCGAAAAATA
AATTTTTCGAAATATGCCGGAAAAACTGTTTTTTTGGCATTTTCTCGAGA
TTTTATCATTAGTTTTTTCTTAATATGGCCGAGTCCGATTTTTTAGAATA
TTTTTTTTCCGGCCGAAAATCGCCGTCTGGATTTTCATTGGACTTTTTCC
TTATAATTGATAACAATGCTCACCATCAAGCATGATTCAATTGTCAATAA
AACTGATTTTTGCGACCAGAACTTTTTATTTTCCCTACAACCCTTCCCTC
TCCCCCCATCAACAATCAGTGATGAATTTATTGCGTTATGCATTTTCGCT
TAACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTCCTCGCATTGCT
ATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTAG
TTCATCTGAGGTTATTGGTAGACTCAACCAGTTGTTTTATGGAGGTCAGT
ACATCAAAACTTTCAGTTCTCTTACAAAAATTTTTTTTCAGAGTAGTATA
TTTTTTACCCCGTCTCTTGCAGGTTATGGAAGAGCTGAAAAACATGAAAG
GCTCTAAAGAAGATAAAATGAAGATGTTAAAAATGCTACAAAAACAACAA
CATGAACAACAACAAAACGAGTCATGTGATGATAATCTAAGCCAACGATT
GGCTGGAATTCACATGGACGACCATGAAGGATTATGGGAGAATTTGAGTG
AAGAAGAAAAACACTTGTTCAATGAACGCCTGAGAACAGGAAATGTTGAT
TTCTTAATCACCTGGAAACCTTGGTGGAAACGGGGAAGCCGGTAAGTTCT
CTATATGCTGATGCAGAAAAAATATTTTGAAAATGAACTACCACATGATT
TTTTGGGTAAAGTTTTAATACATGAATTTCCTATTATATTAGCAGATTCA
TGTAAAAAAGTCACGAAAAAAGGTCAAGAAAAAGGTCGAATAAAAATCTA
ATCTGTTGAAAATTGCACACATAAACAATTTTTTGGACCTACCCCGGTGG
GGTGGAGGTCCTATAAATTAACCCGTGTTCGTTAGTTAGTTAGTTCGTTC
GTTAGTACGTTAGTTACCAACTTTTCTCGAGATTGGCTCATTCAATTTTT
CTGATTTTTTGCACAAAGGTGCATTACTATAAACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTTGAGATTTTCTCGAGATTTTATCATTAGTTTTTTGCGATTTTTTGCA
CATAGATGCACATTAGTACTGCCGAAAAGGTGTCGAAAACCGTTTGCCGA
AAAAAGAATTTTTCCGGTCTGTAGAACTGGAAATGTGCCGGAAATCGTCG
TTTTTTCACATTTCCGTCACATTTTTTCAACTTATTTAATTGTTTCTTTA
CAGAAAAATGTTCTTTTGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAATCGC
AAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTT
TAACGGTCATGCTCACGTAGATATCAATTAAATTATATATGTGTTAAATG
CATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTTTCTTCAAATGTCT
GAAGTATGAGGTAATCTTTGCATGTCTCGGCCAATCAGAGCTTTACTCGA
TGTTCTTTACATGAATCTGCTAATAGGCGCTATCAGTAAGCAAGAAAAGC
CGATAATTTCCCTATGTAGGATAATATTTGGAGAAAAAGAATTCACAGTA
AAAAAACCAGCCTCTTCCCCGTGTATCCCAGGCTTTATTTACGTTACTGA
TGGACGCAAGGGAATATTACATTGAGTATAAATTATCCGGCGCTATCAGT
AAGCATAGCCGACAGACAATACCGGGTGTGTCACAAAAAAGTTTCTCCCT
TTAAACTGATTTTCTGGAGTGCTATAAATTTTAAATGAACGAATCCCTTT
CCATTAATAAGAAGAATGATAAACTTTAATTTTGAGGGGTTAGTATTTAT
CTAATTTGGTTCATCAGATCAGAAGTTATCCTCAGTTGAATAAGAAAGTT
ACTTCCAGAAAGTGCTTTTAAAAACGTTGAAAATCGACCTATCAAATTTT
TATTTTAAAATTGGTAGTCGCGATAGCCTTCTGCACGAATAAGAGCATTT
TTTAAGTAATTAAACGCCTAAATTTTGAAATTTTGAGTTTAGAAAGGGTT
TAAAATCTTTATCAAAACCATTTTCATTTTTTTTTGCCGAGCTAGACTGG
GTAAAGTCATTTTGATCCATTTTTATGAATCTTGCCAGAATTTCTGGCAT
TTTCTGACGATTTTTTTTCCTTTAGTCTTAAAATTTAACTTTCCTTTCTT
TGACAGCTAATTGTAATTTTTAATGAATAAAACAACAATGCTGATGTATC
ATGTGATCGTGCATCTATTTAATTTGATAGGCTGATTTTGAACGTTTTTG
AGCACCTTTTGGAAGCAACTGTTCAATTCAATAGAGCATAACTTTTGATC
TAATGAACCAAATTTAACTAATGACCCATCAAAATTTAAGTTAATCTTTC
TTCTTTTCAATGGAAAAGAATTCGTTCTTTTAAAATTTTTAGATCTCAAG
AAAATTCACTTGAAAGAGAGAAACTTTTTTTGTGGCGCACCCTGCAGCAC
CCTGTACTACACAGGGAATGAAAAGCTACATTTCTTCAATAATTTCACGG
TGAAATTTTGAAAAAAGCTTTGGAGCCTTTGACTGTGGATTCGCGTTAAT
GCAACCAAAACTGTTAAGTTGGTGACCTTTCTATATAAATAATTCAGCGT
AAGATTTATATTTTTTTATACTTCTCAAAGCAATGCATGTTTTTACGTGA
CGTTAGGAACCCACTCTTAGTCTTAAGCGTCCGTTACTTAGCTTACTTTG
AGTGGCCATAAGGAAAATATCTTCTTTACACTTGAAAAAAGAGCGGGTTT
AGATTTTGCATTATATACATACAGATGCTTAAGCTCGTGCTGAAGTAACT
GACATTCATGTTGTAATGTTGAAATAAAAAGATCATTTGTAGCCTTTTAA
AGCAAAATATACTTTGTAATGTGTAGGTCGGAACGGACATTGGTTTCGAT
AAAAGTGTTTTTGCTATCGAAACAGATGGGATCTTAAAATAAAATCAGGA
AACTACATAGTCGACCTTTATCCCAACACGCGAGTTTTTGATACTCTGTC
ACATGAGTTTTTTTATCACCCTGTGAACGGTGTCAAGAAAGAAGCCGTGG
TCGTCTGGTCAGGCGTTCATACATAGTGGACAGAGGGGTATCAAGCCCCC
CCCCCTAAAAACGGCACCCCCTTCTTTTTACCCACGCCACTCCTTTCACA
AGCCTCCCTTCTTTTAAATTTAGTAAAATTCTCAAACCCCCCCCCCCCCC
CCTTGAAGGGGGGGGGCACCATGACATATTTTGATGAAAGAAAAGAAACT
GGTCCATAAATCCTATTTTGATATGCCGATTTGTATGATATTCGAAAATT
AGTCGTTTTCGGTAATGAAATAGTAATGAAAGTTTTTTTCTAACCAAAAT
TCATAATAAACAATTCTGGAGGTATTCTTGCAGGAGGTTTAAGCAGTTAG
TACAAGACACTATAATGCCTACTAACTGTAAAATACGATGTTTTTTTGAA
AGTGTCCTCAGAAAATTTCATTTTTCACGCAGCTAGTTTCAAAATTTGGC
AATTTTTTAGCAAGGGACCGCCCTTTTTTGCAGTTAGTACGTACCTGAGT
ACCAAGTGATTTCATCCAATTCACATGGCACACCACAAAGGTACTAACCG
GCATAGTGTCTTGTACTAACTGTTTGACCCCCTGATTCGTATATCATCCA
TGGTTAAGATTTATAAAAGCGTTCTTTTTTACAGGACTCAAAAACTACCA
AAGTTGTTTCCAGAGTTTGAGACATGTCAGCAACTTCTAAACGGTAAGCC
ACCTCATTTTTCATTGAAATTTAATTGTTGTGAGATCATTTTGACGTATG
TAGCCACATTACGTCTTTTCAATGGTGATTTATACGATTCACCGTTTGAG
GTATGTGATCTAATACATCAGCTATCAAATGTTCTATCGGAGGATAGGAG
TTACAGTGACGTGGAAACGGTTTTTGTATTTTTTATACAAAACCATCAAG
AATTGGCTGGATTAAGTGAAAAACATTTAGATGAATGTTTTAAAGATTTA
TCGTATTTTTTCGAATCAAGTCGAATGATAATGTTGCACGCTTTATGTGA
TTTTCATAAAAAATTGAAAAAGTTACGAAAATTGGTTTCCTTGAAGAAGG
ATGACCCTAAAACAGAACTTTTATGTAAATTATACAAGAACATTAAAAAG
TTGTATTTTCTATCCTGTTTTTGTAATGAGAATGAGAAACTGGTCAGGGA
GTCTGGAAAAGAACTTTTGAAGTTGTACAAAGTGAAACAGAAAGATCGGC
TTGACTTTAACGAACACGTGCAAGATATTGAAAAACATAAACATCATTTG
AAACCCAAAGTCGCCGGACATAAAAACGATGGAGCAAACGTTTTAATCGA
AGAGCTGTAACCTGCTACGGTAATTTTCACTGTAAAAATGAGAATCAATA
AATATAAATTGCATTTTAATTCTAATTGCATTTTAGTTTAAACGATAGAT
GATGAACGTTCTTCATAGATAATATCAGTTTACTATACTGTGTTAGCGAA
TTACATGTTATGACAAATTTGTTATAATAAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004679-exon-sc0000047-1575043694:325334..325584 | TCONS_00004679-exon-sc0000047-1575043694:325334..325584 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1575043694:323194..323462 | TCONS_00004679-exon-sc0000047-1575043694:323194..323462 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1575043694:319392..319450 | TCONS_00004679-exon-sc0000047-1575043694:319392..319450 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1575043694:318600..318954 | TCONS_00004679-exon-sc0000047-1575043694:318600..318954 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1510915933:325334..325584 | TCONS_00004679-exon-sc0000047-1510915933:325334..325584 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1510915933:323194..323462 | TCONS_00004679-exon-sc0000047-1510915933:323194..323462 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1510915933:319392..319450 | TCONS_00004679-exon-sc0000047-1510915933:319392..319450 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1510915933:318600..318954 | TCONS_00004679-exon-sc0000047-1510915933:318600..318954 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1491911889:325334..325584 | TCONS_00004679-exon-sc0000047-1491911889:325334..325584 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1491911889:323194..323462 | TCONS_00004679-exon-sc0000047-1491911889:323194..323462 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1491911889:319392..319450 | TCONS_00004679-exon-sc0000047-1491911889:319392..319450 | Clytia hemisphaerica | exon |
| TCONS_00004679-exon-sc0000047-1491911889:318600..318954 | TCONS_00004679-exon-sc0000047-1491911889:318600..318954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:318600..325584 - |
Blast
The following BLAST results are available for this feature:
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