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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004663 ID=TCONS_00004663|Name=TCONS_00004663|organism=Clytia hemisphaerica|type=transcript|length=337bp AGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAGGTGGT GTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGgtttgaGC TAGGATCATTGCACAATCCGAAGGTTAAAAGTTGGTGTTTACAATGGGTC TccatggatggatggatggatgggtCCGTTTGAATTGAAAAGGTGCTACA TTTGTTTTTGAGATCATCCAACCAGAACGCTGATGGTCAAAACGATTGAA TTTTGTTTACATGGATAATCAGATCATTCTTCCGTCACCTCCCTTTTCCT TTCAAGGTTTGTTTGTGTTGTATGGATTTACTATCCG Run BLAST on NCBI transcript from alignment at sc0000047:110075..123604- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004663 ID=TCONS_00004663|Name=TCONS_00004663|organism=Clytia hemisphaerica|type=transcript|length=13530bp|location=Sequence derived from alignment at sc0000047:110075..123604- (Clytia hemisphaerica) AGGTTGGCAGCCCACAGTCTGGCTCTGGTATTCTACAGCATCAAGGTGGT
GTACTTGGAAACCCTGGTCCGAGAGGTCCTCCAATGAGAATGGTATGATA
CAGTTTCTACCAAGAACCTAGTCTTTTTCAAAGTTTGTTTTGGCCTCTAT
AAGACTTAAAGTGTATTTAATGGTCTCAGTTTGGATGTGTTCCATGCACC
TGAAAATCTGTTCATCAGGCCTAATCAGACAGATATACTGTGAATTGCTC
AATTAATTTAAAGGTGGTATTGCTGCATGTTTTTTTTATTGTTAAACTTG
TCGATACTTGCACTTGCAGAATTTTAAGAAAAATCTTTGAATTGTTGAAA
TTGACAGTTGATTAATTTTGGGTTCGATATCTGGCCTATGATTGTGCTTT
ATGATTTGTGTTGCAGTAGTTCATTTAATTTTGCCAATGCCCTTCTCATT
GTTCTTCTTGAAATGACAATATCTTTGCCACATTAAAGTTTTAAAATCTA
TGTACGAGGAAAGAAATAGAGGAATTGTCAACTTTCTTATGAGAAAATGT
AAGTTGTTCAAGGCGCAATTCAAGATAACTTATCACTTAGGTCTGAGTTC
AATGGTCAGGGAAAACTTGGAGAGTTTGTTTTACATCAAACATGCATTGT
CAAAATATTTACCTAAATATCATAGTAAAGAGGGGTTCGGAATCTGGTTT
ATAGAGCTTCGAAACTATGAAAATGGTTTCTGTATGAGAAATTGATCAAA
ACCATAGTTTCTTTTGTAAGGGCAAGACATCTTGCTGATTTAGCCATAGC
CATAGTCATAGTAAAACATCTTGATTACTACCCATAGCTCCAATTCGTAA
GCAAGTGTCAAGAAATTAAATTTTGGATTACTTTTTTTTTTTTTTCATTG
TGTGAGCTCGGGAGCAAAACCACCACTTTGAGGAAAGAGTACTCACAGTA
TATCCTGTTCAAAACAGCCTATTTGAAGCAACGAAACTCGTAATGAAGTT
AGAAAAAAATGAACTTTTAGCCAAATTTATTATCCAATCCTAGATAAGGT
ATTAAATGAGTCTGGGTCTTTCAAGCTGACTTAATATTTTTTTTAAAGAA
TGCTTTTTCCATTCAGATGAACAGATTTTTCTGGTGCACAAAGTGGTCAA
AAACAAAAGCTTAATAGGCATTTTGATATAATATGCAAAGTCATGTCAAG
AATATTTCTTGCAATTGTTAATAGTTATCCTCACTTACTGAGATCAATCC
TAGAGGGATGATCTTACTACCTTCCCAAAACTAATTTAAAGGATTAGCTT
TAGGGGCCACTTGCATATCGATTTTTTCCACGACTCATGTCAAAATCATG
CCAAGTCGTGGGGAACAATTATAGTGACTTTAGAACGCCATGAATTAAAG
ACATTATAGCAGAGTTTTCTGTTCTTTGAAAGCTTAAGAATTTTTTATCA
GGTTTCAAATATATCCAAGTATGTAATTCAACGCCTTATCAGCCCTTATC
AACTGTTGATCTCTGCACGAGACCCAACTCTAAGCGTGAAGATCTGAGTA
TCTAGAATTTGGTCAGAAAATAAAAATATTGAAACGTCTACCAATGACAA
AACCTTTAATTTAGAAATTGCTACATTTAGACTTTTGCTTAAGATTTCCC
AGTTGAAGAGTAAGAGATTTGGTCATCATTATTAAACCAGACGTATTATT
TAAACACGAAATTCTTTTCCCTCCCCTTAACTTGTCTTGATAGTCCCAGA
AAAACCTTCTTTCATAAGCACCTTAAGCTTCAAAGTAATAGTTCAGAGAC
ATTGGCAAATCCAAATTTTCAAGTTTTCATTTGACAAAATCATAATTTCA
TAATTCATTACAATATTGCTGGCGCTCCTAGGCAATTAAACCAATCTTTC
TTTTTTATTGTCTAAACTTGAATATGGTACTCATCTAATCATCTTTTAGC
GTCCTCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCCACGCGGTGGT
GATATGCAACACAGACCTCGTCGTTAAACACAAATAAATTTCAAAAATCT
CTTTGAAATTTTATTCGATAATCTAATCTACTGAAGTGAACTGACAAGCA
AAGATGACTTTTTAGCTTTTTTAAAGAACTTGCTTTTAAATGGTTTTATG
AACAAGGATGAACTGTATATATTGTGAGGTGTAGATTCAGAACCCTGAAT
ACATTGACAGACAACAAACGAACTTAAACAAAAATCTGTCTTTCAAAAGG
ATATCATTCCTGCAGATTCACTTGGCTTTATTTTGTTTCCTGAGATTGAG
TCTCANTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTTGTTTT
GTTTCCTGAGATCGAGTCTTGTGCGATAACTCAAGTATTTTTAATATATT
TTTGGTATTACTTTTTGCTTTTATGAAACCTGATTTTTATTTAAATAAAG
CTATTAACTGAGTAGTAAGCTTATTCTGAACTGGTTCTATCAATTAATTA
GAGTACATAATTCTAAGTCAGATCATACCTAAAGTTGCAAATTGATTTCC
TTTAATGCTATAATTTTCAAGAATTTTATCCTTTCTACCTGTTTCATCTT
TTTCGCTGGTCCTTTTAGAAAAGGTTCTTTATTGATCTTGTTGGCTTAAC
CTGATTTATTCACTTATTTCTTTCGACAAAATAGATACCAATGCGAAGCT
TAACAGATTTGAACACACCAATTAACTTGGACACATGTGAGATTTAGGTT
GAAAATATTATATGGTGACTTTTGTTTTTTGTTTTTCCCATTCGATGGGA
TTGGCCCCTTTTGAGATTTATGGCTTCACATGGGGAATCGTAATAATAGT
TTATCACAGTTTGTACCATGAACAACAGTTGCCATTCCAGCATACTTTAT
TGCTCAGTTATTGCTGAAGAGTGAATATCTACAGTTATTGTAAATTTCTA
AACGGAGTGTCTTTTAAAGGTGTTTTCTTTTCAATTTTGCTATTACAATT
TTCTTGGTTGCACCCCTTATATTTAAGTTTTGAAAAAAGTTGTATGGTGG
TTGTAAGTATCAAAATTGGATTTTGGTGCACCCCTTATATTTAAGTTTTG
AAAAAAGTTGTATGGTGGAAAAAGTATGGCAGCAGTCTACAATAAGGCAG
CAGTCTACAATAAGGCCAAGTATTTTTTTGTTTTTTTTTTNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATGTCGTATATATACGACA
TCGGCAAATCAGGTTACTAAAAAAAATTACCCCTCGGCAAATGGATTGGG
GTACAAAAACAAGGTACCGGCACGCAAAGGGTTGAGGAAATTCCTTAGGG
TGGATTTAAAAAAAGGGGGTTTTGAGATGAGGAGAACGATAGAAAGTTTA
GTATTAACATTCCTTATGTGAGAATAAGTGTCGAACATTTTTTATCTCAT
TGGTCAAAATAGGAACACACATTGGGTCACTTTACTTGAAGGCCCGGTTA
TGCAAAAATGATATTAGTATGAATCATGTACTTGTAAGTAAAAGTTTAAA
GATCAGTATACTCACTCGAGTTGAAACTTGTAATAAATTCCAAGCCCATT
ATGAAGAAACAAACAAACATTGTTAAAGGTAAGAAAGTTTTGTATTGTTC
AAGGGGGTGGTCACTCGCTCAATTTTAAGGTAGAATCACAGTCAAGTATC
ACTTTCAAAGTCTGATTCAAAATGATGCAATGATTTTAAGTACCTTTAAA
GTCCGATAGAATTAGCATAAAAAGGCGGCTGAAATGTGTTTGAAAATCAC
TTATATATTTACTGACCCAGCATATTTCAATATTTTAGCTGAGTCAGTAA
AACATTGAANTTTTTTATTGTCTAAACTTGAATATGGTACTCATCTAATC
ATCTTTTAGCGTCCTCCTTTTGGAGGCCCTCCTCCGAGACACATGGGTCC
ACGCGGTGGTGATATGCAACACAGACCTCGTCGTTAAACACAAATAAATT
TCAAAAATCTCTTTGAAATTTTATTCGATAATCTAATCTACTGAAGTGAA
CTGACAAGCAAAGATGACTTCTTAGCTTTTTTAAAGAACTTGCTTTTAAA
TGGTTTTATGAACAAGGATGAACTGTACATATTGTGAGGTGTAGATTCAG
AACCCTGAATACGTTGACAGACAACAAACGAACTTAAAACAAAAATCTGT
CTTTCAAAAGGATATCATTCCTACAGATTCACTTGGCTTTGTTTTGTTTC
CTGAGATCGAGTCTTGTGCGATAACTCAAGTATTTTTAATATATTTTTGG
TATTACTTTTTGCTTTTATGAAACCTGATTTTTATTTAAATAAAGCTATT
AACTGAGTAGTAAGCTTATTCTGAACTGGTTCCATCAATTACTTTAAAGT
ACAAAATGCTTGATCAGTCATTTAGGTTATGCCTAAAGTTGCAAATGGAT
TTCTTTAATGCTATAATTTTCAAGAATTTTATTCTTTCTATGCCTGTTTC
ATCTTTTTCGCTGGTCCTTTTAGAAAAGGTTCTTTATTGATCTTGTTGGC
TTAACCTGATTTATTCACTTATTTCTTTCGACAAAATAGATACCAATGCG
AAGCTTAACAGATTTGAACACACCAATTAACTTGGACACATGTGAGATTT
AGGTTGAAAATATTATATGGTGACTTTTGTTTTTTGTTTTTCCCATTCGA
TGGGATTGGCCCCTTTTGAGATTTATGGCTTCACATGGGGAATCGTAATA
ATAGTTTATCACAGTTTGTACCATGAACAACAGTTGCCATTCCAGCATAC
TTTATTGCTCAGTTATTGCTGAAGAGTGAATATCTACAGTTATTGTAAAT
TTCTAAACGGAGTGTCTTTTAAAGGTGTTTTCTTTTCAATTTTGCTATTA
CAATTTTCTTGGTTGCACCCCTTATATTTAAGTTTTGAAAAAAGTTGTAT
GGTGGTTGTAAGTATCAAAATTGGATTTTGGTGCACCCCTTATATTTAAG
TTTTGAAAAAAGTTGTATGGTGGAAAAAGTATGGCAGCAGTCTACAATAA
GGCAGCAGTCTACAATAAGGCCAAGTATTTTTTTGTTTTTTTTTTGTTTT
TTTTTGGACCTACCTAGAGATCCTTTAAATTAACCCTCGTTCGTCCGTTC
GTTTGTTACCAGCTTTTCTCAGGTTTGGATCATAGGAACTTTACGAATTT
TGACACATAGATGCAAAATGGTATTCCCGGTGCCCGATTATCATATATAC
ATTTTTAAGGGGATCAATTTCAGCCACAAAATGGCCAAAAATGGATTTTT
GTCCTTTGTGAAAAATTGCATCGTAAATTTTATTTGATTTTTCCATAAAA
GCAGGTTGCTTGCTATCATATCATAGGTTAAAAATGGCTGAAGCAGATTT
TTGCTGAAAAAATTTCAGCTTAAAAATCTTTAGCTTATGAGTCATTATTT
ATAAGCATTTTCTTAATCCAAATTACCCAATTATTGTTAATCAATATATA
GTATATTATAACACATGGTTTTCATGCTTGTGAGATTACAATTTTAGACA
AAATTATATTTGGGTGATAACAATTTTTTGGGCCAATAATGGATGAGCTA
GGTAAGTTTGTCTCAAAAGTTTTTTTAGGCTCGAAAATGAATCTTTGGCA
ATAAAAGTCACTTTTTATAAGCAAAATAAGATTTGCTTACCAAATTTTTC
GAGAATCTGACTGTAAAATTTAATTCCTTTATGAAAAAGTTTCAAAACAT
TTTCATTAAGGGATGAAAGTTTGGTGGGAACTTAATTTGGTGGATTTGTT
CAAAATCTGCCAAAATTAAGTTTCTGCCAAATTTAATTTTTTATGTCATC
CACCATTTAAATTTCTCTATTTATTCTCCCAAATATGTGCTATTTCAGGC
TTTAAATCAGGTTTTTCCTTTTTTAATAGCGTTTTTGGACAAAAATGTCC
TTCATCCATCTGCCACATTAAATTCCCGCTAAATTTAATTTTTCGAGTTA
ACCGCCAAATTAAATTCCCTCTGAAAAAACTTTTTCAGCCATCTGCTAAA
ATAAATTCCTGCCAAAATTTATTCCTTTAATGTAATTTGTTGTAAACATT
GTATCGATAAAGTATCAAGCTTTCTTGAATTCGGATGGCTTTTTCTGATG
TTTATCAAAAATCGAATCCTTCTCAAAGTTTGTATTATAATCAATTTTCA
AAAAGATTTTGCTAGTGAAACAAATGTCATCTCTTTTGCAGCAGTTAATG
TATGTATAATGTAGGCAAACGTAGAGGTCAAGCTTTCACTAATCGATGAA
ATTGTTCGATCAAATGGGCATGGAATTATTGGTTAAAAAACCATATTTTT
TAATTTCTGTTCCTATAGTGATGGAATGTGAAGGTATTGTATGTTTTTGT
AATGGTAAGTCCTTTTTTCCCCTTTAAGAAGGAAATGAAGTCCATTCAAA
ATGAGCATTGGATAATTTTTGCTACACTTAAAAAAACAAGTAGAAATTTT
TGACTGGACTTTTTATTTTTACTCTACTTTGCGGGGAAATATTTTTAGAA
TACTAGCCGTTCCGGCCTCGTCCGAGACCACTCTTTACGTTAATAATTTA
AGCTATCATTATTGAGAAATTAAATGTATTTTTTACCTTAATGAGAAATA
TGTTAAAACAACAATATTTTCGTATAGATTGGAGCATGAATTAAAACTCT
TCCTGTATTTTCAAAGGAAAATTATTATGTATAGAAAATGTCTTATTTTT
TCATGGAAAACTACCTCTTGTTAAAAAAAATCGACTAATACAATTTCTTG
TATTTTCCAAGGAAACGATTACATGAGACAATTTTAATGTTTCAAATAAA
TTATCTTAAATTATTTTTTGCTAGTTTCACCAAGTTGATTTTTCAAAATG
GCTTCTGTCTTTAAAAATGGTAAAAGGTGGTAGAGTTATTTTAAAAGCAC
ATCGAATCGAAATTTTTAAATCTAGTGACAAGGTAAGAAGACCTAGCATT
GCTTGAATTTACCACAATCAAGAGTATCTTGTAAAACTATTTTCATGCTA
AGAGTAGTTGAGTCATCGTGGCTAGCCAACTTGGGACATTCGAGGGTGAC
TTTGAAAGTTAAATATTTTAAAATGAAAAAAATAGAGAACGAGGGTTCAA
TTTCAAAGCACTCTGTCTTGAAATACAGTATGCTCAAAAGTGAAGACATG
TCTGCTTAAAAATCGCTAGCGAAAATGCTTCATGCGAGAATGGGAGAGTT
GCGTTTAAGTGATTATAGTATAAGACAAACCTGGCAAATTTTACTATATT
GTTAAAGGTCCGAATGTTCTACACTTTGCAATTATTACTGTCCTTTACCT
TAAAAAAGAATCCCTTTCATTAGAATTAATGGTCAAAATTTTGCTGACGC
ATGGGAAATACAGTATTCGATTGTACTGAAAAAAATAGGGTTTTTATATC
TGTTCAGTCTTAAAAAGGAAGCACGTACCCCTATATGTATAATGTTACAT
GTTTAAAGAAATTTGTCCAAGGTGCTTTTTAACCCTTTCCGTGCCGATGT
CGTATATATCCGACATGCAAATTTTCACTCTACTTGCCAATGTCGGATAT
ATCCGACATCAAATTTTTTTACCTAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAAACCCTGTAAACCATA
CCATTTGAGATAGTACGTTTCAAGGTCCATCTTTTGAGTCTGGTTTGAAA
TTACAAATCTTATCGGGCAGCTAATGACGTCACTAAGAAATGTGACAGAC
TTTAAGCCATTTCGGACCAAAACTTCAACTGACGAAATTTTAAAGACGAC
TACATTTTCGTCATCTACTTTTCATAATCTTTTAGATAAAAGTGCGGAAA
TTTATTTTTGGGAAGTTTTAGAATTTGCTATTGGGAGTTTGTACTAGAAA
TTGGCATCATCATATAATTCTCTGAAAAGTGTGAGAAACTTTTCTATTCA
ATTAATTATAAAATATTCAGGGTAATTCCGGTGGTTTTAGGGACCCCATC
ATAAGGAACGTCTGTGCCAAATCTTAGCCACCTTTTTATTTTTCTCAAAT
TAAAAAAATAATTCTGTCGGACTATTATCAGTTTGTGTCCATGATTTAGA
TGCTGTAATTAACGAGGAATTTTTATGTTTTATGATCGAATACTGTTTGA
ATGCAATGAATTTGTTCAATATTTGATTTAAGACTTGAGTAGAATCAATA
ATACCTTACCATCTTGATTATGTATAAAAAGGGACCAAATGATTGGTTTG
GATTAGCTTTGGTCCTGATCTCTTTTTCAAATTTTTACACATCAGCTTAT
CTTTGGAGAAATGCTAACGTTAAGGCAGATACTTGACAAAATTTAAGTTT
GAGTGACCACCCATTTCAGTCATTTGGAAGTGTTCCAGAGAAAACCTATT
AGTTGGCCCTAACAGGGAAAAGAACTTTGCCACACTGTGAAACCGATATT
GTAACATCTTAAGAAATCAGGCCTATATCTAAATTTTATGGAGTTCATTG
TTGGGCCTCTAATACATATGGTATTTCTGGAACACTGTTTTCCTGGCCTC
TTGCAACGTTTTTGGGTTATAAAAAAATATATGCAAAGAAAGCTAAAATT
CCCTACCCCTTAATCCCTACCAGATTTGTTTATATTCAATATAGTGAATC
TTAAACTTTTTAGAAAACTTTGATTTGTCATTGCTAACCACTTCAACAAC
AAAACTTCTGATTGAGAGGATATTTTTGAAATATTATTTTACCTAGGCGA
AGCCCCTTCTTTAATTTCTTTCTTTGACACATTTTTCACTCGTTTTTTTT
AGGTTTGAGCTAGGATCATTGCACAATCCGAAGGTTAAAAGGTGAGCTAA
ACTTGATATTAAGGAAAAGTTTCCTTTTCCCAGTTAACATGAAAAATCAA
ATTTCAAATCGCAACATTTGTCATGACGATGATTGAACAACTTTTCCCGA
AAACGATTTCAATTAAAGTGAGATTAAACTTTATGATAACGGAGTCATGA
ACAATTCAATAAAACATTTTACTATGTGATGGCTCAACTTTCAATAGATT
TGAGAGAATCTGAATTTTGACTTCCTTTTTAGTTGGTGTTTACAATGGGT
CTCCATGGATGGATGGATGGATGGGTCCGTTTGAATTGAAAAGGTGCTAC
ATTTGTTTTTGAGGTAATACATTTATGGTTAACTGGTTAACTTATTAGAC
AAAGGCCCTTCTCTTCTAGCCTTGAACGATTATCTAGTTGAATCGAGTGA
AGCTCTTCCTCTTGTCACAACCTTCACCTTCACAACCAATTTCTCACTTG
TTTCTAAACTTTAAGCATAAATATTAGAATTTATTCTGTATGTATTCATG
TTTAGATCATCCAACCAGAACGCTGATGGTCAAAACGATTGAATTTTGTT
TACATGGATAATCAGATCATTCTTCCGTCACCTCCCTTTTCCTTTCAAGG
TTTGTTTGTGTTGTATGGATTTACTATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004663-exon-sc0000047-1575043694:123513..123604 | TCONS_00004663-exon-sc0000047-1575043694:123513..123604 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1575043694:110714..110752 | TCONS_00004663-exon-sc0000047-1575043694:110714..110752 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1575043694:110392..110472 | TCONS_00004663-exon-sc0000047-1575043694:110392..110472 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1575043694:110075..110199 | TCONS_00004663-exon-sc0000047-1575043694:110075..110199 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1510915933:123513..123604 | TCONS_00004663-exon-sc0000047-1510915933:123513..123604 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1510915933:110714..110752 | TCONS_00004663-exon-sc0000047-1510915933:110714..110752 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1510915933:110392..110472 | TCONS_00004663-exon-sc0000047-1510915933:110392..110472 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1510915933:110075..110199 | TCONS_00004663-exon-sc0000047-1510915933:110075..110199 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1491911889:123513..123604 | TCONS_00004663-exon-sc0000047-1491911889:123513..123604 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1491911889:110714..110752 | TCONS_00004663-exon-sc0000047-1491911889:110714..110752 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1491911889:110392..110472 | TCONS_00004663-exon-sc0000047-1491911889:110392..110472 | Clytia hemisphaerica | exon |
TCONS_00004663-exon-sc0000047-1491911889:110075..110199 | TCONS_00004663-exon-sc0000047-1491911889:110075..110199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000047 | supercontig | sc0000047:110075..123604 - |
Blast
The following BLAST results are available for this feature:
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