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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004661 ID=TCONS_00004661|Name=TCONS_00004661|organism=Clytia hemisphaerica|type=transcript|length=1397bp
AGCAAACCCTGTAAACCATACCATTTGAGATAGTACGTTTCAAGGTCCAT
CTTTTGAGTCTGGTTTGAAATTACAAATCTTATCGGGCAGCTAATGACGT
CACTAAGAAATGTGACAGACTTTAAGCCATTTCGGACCAAAACTTCAACT
GACGAAATTTTAAAGACGACTACATTTTCGTCATCTACTTTTCATAATCT
TTTAGATAAAAGTGCGGAAATTTATTTTTGGGAAGTTTTAGAATTTGCTA
TTGGGAGTTTGTACTAGAAATTGGCATCATCATATAATTCTCTGAAAAGT
GTGAGaaacttttctattcaattaATTATAAAATATTCAGGGTAATTCCG
GTGGTTTTAGGGACCCCATCATAAGGAACGTCTGTGCCAAATCTTAGCca
cctttttatttttctcaaattaaaaaaataattctgtCGGACTATTATCA
GTTTGTGTCCATGATTTAGATGCTGTAATTAACGAggaatttttatgttt
tatgaTCGAATACTGTTTGAATGCAATGAATTTGTTCAATATTTGATTTA
AGACTTGAGTAGAATCAATAATACCTTACCATCTTGATTATGTATAAAAA
GGGACCAAATGATTGGTTTGGATTAGCTTTGGTCCTGatctctttttcaa
atttttacacaTCAGCTTATCTTTGGAGAAATGCTAACGTTAAGGCAGAT
ACTTGACAAAATTTAAGTTTGAGTGACCACCCATTTCAGTCATTTGGAAG
TGTTCCAGAGAAAACCTATTAGTTGGCCCTAACAGGGAAAAGAACTTTGC
CACACTGTGAAACCGATATTGTAACATCTTAAGAAATCAGGCCTATATCT
AAATTTTATGGAGTTCATTGTTGGGCCTCTAATACATATGGTATTTCTGG
AACACTGTTTTCCTGGCCTCTTGCAACGTTTTTgggttataaaaaaatat
atgcaAAGAAAGCTAAAATTCCCTACCCCTTAATCCCTACCAGATTTGTT
TATATTCAATATAGTGAATCTTAAACTTTTTAGAAAACTTTGATTTGTCA
TTGCTAACCACTTCAACAACAAAACTTCTGATTGAGaggatatttttgaa
atattattttaccTAGGCGAAGCCCcttctttaatttctttctttgacac
atttttcactcgttttttttaggtttgaGCTAGGATCATTGCACAATCCG
AAGGTTAAAAGTTGGTGTTTACAATGGGTCTccatggatggatggatgga
tgggtCCGTTTGAATTGAAAAGATCATCCAACCAGAACGCTGATGGTCAA
AACGATTGAATTTTGTTTACATGGATAATCAGATCATTCTTCCGTCACCT
CCCTTTTCCTTTCAAGGTTTGTTTGTGTTGTATGGATTTACTATCCG Run BLAST on NCBI transcript from alignment at sc0000047:110075..111924- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004661 ID=TCONS_00004661|Name=TCONS_00004661|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000047:110075..111924- (Clytia hemisphaerica)
AGCAAACCCTGTAAACCATACCATTTGAGATAGTACGTTTCAAGGTCCAT
CTTTTGAGTCTGGTTTGAAATTACAAATCTTATCGGGCAGCTAATGACGT
CACTAAGAAATGTGACAGACTTTAAGCCATTTCGGACCAAAACTTCAACT
GACGAAATTTTAAAGACGACTACATTTTCGTCATCTACTTTTCATAATCT
TTTAGATAAAAGTGCGGAAATTTATTTTTGGGAAGTTTTAGAATTTGCTA
TTGGGAGTTTGTACTAGAAATTGGCATCATCATATAATTCTCTGAAAAGT
GTGAGAAACTTTTCTATTCAATTAATTATAAAATATTCAGGGTAATTCCG
GTGGTTTTAGGGACCCCATCATAAGGAACGTCTGTGCCAAATCTTAGCCA
CCTTTTTATTTTTCTCAAATTAAAAAAATAATTCTGTCGGACTATTATCA
GTTTGTGTCCATGATTTAGATGCTGTAATTAACGAGGAATTTTTATGTTT
TATGATCGAATACTGTTTGAATGCAATGAATTTGTTCAATATTTGATTTA
AGACTTGAGTAGAATCAATAATACCTTACCATCTTGATTATGTATAAAAA
GGGACCAAATGATTGGTTTGGATTAGCTTTGGTCCTGATCTCTTTTTCAA
ATTTTTACACATCAGCTTATCTTTGGAGAAATGCTAACGTTAAGGCAGAT
ACTTGACAAAATTTAAGTTTGAGTGACCACCCATTTCAGTCATTTGGAAG
TGTTCCAGAGAAAACCTATTAGTTGGCCCTAACAGGGAAAAGAACTTTGC
CACACTGTGAAACCGATATTGTAACATCTTAAGAAATCAGGCCTATATCT
AAATTTTATGGAGTTCATTGTTGGGCCTCTAATACATATGGTATTTCTGG
AACACTGTTTTCCTGGCCTCTTGCAACGTTTTTGGGTTATAAAAAAATAT
ATGCAAAGAAAGCTAAAATTCCCTACCCCTTAATCCCTACCAGATTTGTT
TATATTCAATATAGTGAATCTTAAACTTTTTAGAAAACTTTGATTTGTCA
TTGCTAACCACTTCAACAACAAAACTTCTGATTGAGAGGATATTTTTGAA
ATATTATTTTACCTAGGCGAAGCCCCTTCTTTAATTTCTTTCTTTGACAC
ATTTTTCACTCGTTTTTTTTAGGTTTGAGCTAGGATCATTGCACAATCCG
AAGGTTAAAAGGTGAGCTAAACTTGATATTAAGGAAAAGTTTCCTTTTCC
CAGTTAACATGAAAAATCAAATTTCAAATCGCAACATTTGTCATGACGAT
GATTGAACAACTTTTCCCGAAAACGATTTCAATTAAAGTGAGATTAAACT
TTATGATAACGGAGTCATGAACAATTCAATAAAACATTTTACTATGTGAT
GGCTCAACTTTCAATAGATTTGAGAGAATCTGAATTTTGACTTCCTTTTT
AGTTGGTGTTTACAATGGGTCTCCATGGATGGATGGATGGATGGGTCCGT
TTGAATTGAAAAGGTGCTACATTTGTTTTTGAGGTAATACATTTATGGTT
AACTGGTTAACTTATTAGACAAAGGCCCTTCTCTTCTAGCCTTGAACGAT
TATCTAGTTGAATCGAGTGAAGCTCTTCCTCTTGTCACAACCTTCACCTT
CACAACCAATTTCTCACTTGTTTCTAAACTTTAAGCATAAATATTAGAAT
TTATTCTGTATGTATTCATGTTTAGATCATCCAACCAGAACGCTGATGGT
CAAAACGATTGAATTTTGTTTACATGGATAATCAGATCATTCTTCCGTCA
CCTCCCTTTTCCTTTCAAGGTTTGTTTGTGTTGTATGGATTTACTATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004661-exon-sc0000047-1575043694:110714..111924 | TCONS_00004661-exon-sc0000047-1575043694:110714..111924 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1575043694:110412..110472 | TCONS_00004661-exon-sc0000047-1575043694:110412..110472 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1575043694:110075..110199 | TCONS_00004661-exon-sc0000047-1575043694:110075..110199 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1510915933:110714..111924 | TCONS_00004661-exon-sc0000047-1510915933:110714..111924 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1510915933:110412..110472 | TCONS_00004661-exon-sc0000047-1510915933:110412..110472 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1510915933:110075..110199 | TCONS_00004661-exon-sc0000047-1510915933:110075..110199 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1491911889:110714..111924 | TCONS_00004661-exon-sc0000047-1491911889:110714..111924 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1491911889:110412..110472 | TCONS_00004661-exon-sc0000047-1491911889:110412..110472 | Clytia hemisphaerica | exon |
| TCONS_00004661-exon-sc0000047-1491911889:110075..110199 | TCONS_00004661-exon-sc0000047-1491911889:110075..110199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:110075..111924 - |
Blast
The following BLAST results are available for this feature:
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