|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004656 ID=TCONS_00004656|Name=TCONS_00004656|organism=Clytia hemisphaerica|type=transcript|length=2139bp
NGAAATACCAACGAGCATGGTCAAACTGGTTGGATTGGTGTAAAGATAAA
GAAGAAATCATGCCATTTCCAGCAAACCCCTTTTACGTAGCAATCTACCT
GAAGTTCGTATTGAAAACTTCGAAGAAGAGTGGTACATTAACAACAGCCT
TCTACGGCTTAATTAAGACTTTCGATTCAGAATCATTAACGAGCTTACGT
TTTCTATTGATTTGCTCCCTGGGCTTTTTTGGCTTCTGCAGAATAGATGA
ACTATTAACCGTACAGTTGAAGGACGTAACAATAAAATCAGCCCACCTCG
AAATTTTTCTAGAAATCTCCAAAAGTGATCAGCATCGTGATGGTAATACA
ATTTACGTTTCAAGAAATGagaacaccaaattttgccccGTGAACTTAGC
AGAAAGATTTTTATCGCTTTCAAACGTATCCTTAACATCCAACCCTGAAT
GTTTTTTAGTTCCAAGAttgattaaaatcaaaaaaggtcACAAGATCCAT
TTATCCGAAGGAATTTCTTACACGAGAGCaagggaaatatttaaagaGAA
AATAGAGGAGGCTGAAATTAAAGGCAATTTTGGTTTACATAGTCTTAGAT
CAGGTGGTGCATCTGCTGCCGCTCAAAACAACGTCAACGAAAGACTGATT
TCAAAGCATGGTCGTTGGGCGTCCGACAGGGCTAGAAATTCATACATAAA
AGACTCTATCGAGTACAGGTTAACAATTAGTCGCCAATTGGGAATCTAAT
TAACTTTGAAGTATCTTTAAATTATCATCGCGTCGATATgtgattaaaat
tttttttttctatatctatttttcttccacaatcaactttctttttaacC
CTCGAGATACACTGTTCACGCCAGCCAAAGACCAAATGCTCAGTGAAAAC
AAATATGTGTATTTCAATGTGTTTTGAACCCTTTGAGTAAGATAAGTAGN
atatttttttttatatctatttttcttcgacaatcaactttctttttaac
CCTCGAGATACACTGTTCACGCCAGCCAAAGACCAAATGCTCAGAGAAAA
CAAATATGTGTATTTCAATGTGTTTTGAACCCTTTGAGTAAGATAAGTAG
GAGTGGAAAATAGGAAGGAATTTCGGGGAAAACGAACGCTATGAGGAATC
TAGTAAAAGAACAAAATACTCAAACAGTTTGACATTTGTGATTCTAAAGC
GTTTTCTGCTCTTCCCTTCATAACTCCACCATAAAATAATTGCACTCAAA
ATAAATAGCATTTCGTGACAACCCGTTTTTGTATTTTCGCATGACTGAAA
TTTATGATAATCATGACGTGATGTTTTATATGGAAGAACCAAAAAAAGAT
CGggtgtttgccactaattttggtaatttgaatttaaacaaaaaatacta
GTGGCATGCGGCCGCTCTACTTtaggtgcttccgtataaaatattacgtc
atgaatatcatgaattaagaATTCTCAAAAGTAAGTCTACTGCTAATATT
GATGGCAAAGTACaattggtcaaaatttaatATGCATATCTCGGCAATCT
GTTCGTTTTCATTTCAGCAACTCTCTTTCTATGTTTGGTACAGGTCCATg
tcaaaatgaagcaattccattggatAATTTTATGACACAAAACATTTTTG
ACCAATAGAATAGCTTTATTTCTTTTCGAAGAGGACCACAACTATAAAGT
CTGAGCTTGGTTCTATTTTGGAACGTACACTCAATTGCGAATTGCGTCAG
TATCGTAAATCAATACCCAAGACACCTTTTTACTCTAATCCGAATCCTTC
AGCATTGCTTATCGCGATTAGAAGTTTCTCGTGAATATCTTTTCGACTTT
TATAAGATGGTAGGCACAATTGATTGAAGCATGTATGAGCCATCGGTAAC
ctgaaataagaaaataatataCTTCAGTGGATGCCCTTGTTTCGctttca
ctttttgattttaaatgtaCAGGTTAAACATTTATAAACTTTTCTCAAGT
TTATTAtttttgccccgcaggggcttttgttgcttcacgtagcggagttg
ctcgccagaaaaatattcatgttcagattcatgttgtttcttccgattct
gagcgggctgccgcggttaaaaaatgttcgcgcgCACCT Run BLAST on NCBI protein sequence of TCONS_00004656-protein >TCONS_00004656-protein ID=TCONS_00004656-protein|Name=TCONS_00004656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
KYQRAWSNWLDWCKDKEEIMPFPANPFYVAIYLKFVLKTSKKSGTLTTAF
YGLIKTFDSESLTSLRFLLICSLGFFGFCRIDELLTVQLKDVTIKSAHLE
IFLEISKSDQHRDGNTIYVSRNENTKFCPVNLAERFLSLSNVSLTSNPEC
FLVPRLIKIKKGHKIHLSEGISYTRAREIFKEKIEEAEIKGNFGLHSLRS
GGASAAAQNNVNERLISKHGRWASDRARNSYIKDSIEYRLTISRQLGI Run BLAST on NCBI transcript from alignment at sc0000047:53397..55679- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004656 ID=TCONS_00004656|Name=TCONS_00004656|organism=Clytia hemisphaerica|type=transcript|length=2283bp|location=Sequence derived from alignment at sc0000047:53397..55679- (Clytia hemisphaerica)
NGAAATACCAACGAGCATGGTCAAACTGGTTGGATTGGTGTAAAGATAAA
GAAGAAATCATGCCATTTCCAGCAAACCCCTTTTACGTAGCAATCTACCT
GAAGTTCGTATTGAAAACTTCGAAGAAGAGTGGTACATTAACAACAGCCT
TCTACGGCATCAGATGGGGTCTTCACGTCAACGGACTATACTCTCCTACC
GACCACCCATTCGTGAGTATGACATACGAAGGTACGTTACGACTTTGTGA
AAAGAAGCCGAAGAATCCTAAAGAACCTATAACGCCAGAAATCCTCAAAC
ACTTAATTAAGACTTTCGATTCAGAATCATTAACGAGCTTACGTTTTCTA
TTGATTTGCTCCCTGGGCTTTTTTGGCTTCTGCAGAATAGATGAACTATT
AACCGTACAGTTGAAGGACGTAACAATAAAATCAGCCCACCTCGAAATTT
TTCTAGAAATCTCCAAAAGTGATCAGCATCGTGATGGTAATACAATTTAC
GTTTCAAGAAATGAGAACACCAAATTTTGCCCCGTGAACTTAGCAGAAAG
ATTTTTATCGCTTTCAAACGTATCCTTAACATCCAACCCTGAATGTTTTT
TAGTTCCAAGATTGATTAAAATCAAAAAAGGTCACAAGATCCATTTATCC
GAAGGAATTTCTTACACGAGAGCAAGGGAAATATTTAAAGAGAAAATAGA
GGAGGCTGAAATTAAAGGCAATTTTGGTTTACATAGTCTTAGATCAGGTG
GTGCATCTGCTGCCGCTCAAAACAACGTCAACGAAAGACTGATTTCAAAG
CATGGTCGTTGGGCGTCCGACAGGGCTAGAAATTCATACATAAAAGACTC
TATCGAGTACAGGTTAACAATTAGTCGCCAATTGGGAATCTAATTAACTT
TGAAGTATCTTTAAATTATCATCGCGTCGATATGTGATTAAAATTTTTTT
TTTCTATATCTATTTTTCTTCCACAATCAACTTTCTTTTTAACCCTCGAG
ATACACTGTTCACGCCAGCCAAAGACCAAATGCTCAGTGAAAACAAATAT
GTGTATTTCAATGTGTTTTGAACCCTTTGAGTAAGATAAGTAGNATATTT
TTTTTTATATCTATTTTTCTTCGACAATCAACTTTCTTTTTAACCCTCGA
GATACACTGTTCACGCCAGCCAAAGACCAAATGCTCAGAGAAAACAAATA
TGTGTATTTCAATGTGTTTTGAACCCTTTGAGTAAGATAAGTAGGAGTGG
AAAATAGGAAGGAATTTCGGGGAAAACGAACGCTATGAGGAATCTAGTAA
AAGAACAAAATACTCAAACAGTTTGACATTTGTGATTCTAAAGCGTTTTC
TGCTCTTCCCTTCATAACTCCACCATAAAATAATTGCACTCAAAATAAAT
AGCATTTCGTGACAACCCGTTTTTGTATTTTCGCATGACTGAAATTTATG
ATAATCATGACGTGATGTTTTATATGGAAGAACCAAAAAAAGATCGGGTG
TTTGCCACTAATTTTGGTAATTTGAATTTAAACAAAAAATACTAGTGGCA
TGCGGCCGCTCTACTTTAGGTGCTTCCGTATAAAATATTACGTCATGAAT
ATCATGAATTAAGAATTCTCAAAAGTAAGTCTACTGCTAATATTGATGGC
AAAGTACAATTGGTCAAAATTTAATATGCATATCTCGGCAATCTGTTCGT
TTTCATTTCAGCAACTCTCTTTCTATGTTTGGTACAGGTCCATGTCAAAA
TGAAGCAATTCCATTGGATAATTTTATGACACAAAACATTTTTGACCAAT
AGAATAGCTTTATTTCTTTTCGAAGAGGACCACAACTATAAAGTCTGAGC
TTGGTTCTATTTTGGAACGTACACTCAATTGCGAATTGCGTCAGTATCGT
AAATCAATACCCAAGACACCTTTTTACTCTAATCCGAATCCTTCAGCATT
GCTTATCGCGATTAGAAGTTTCTCGTGAATATCTTTTCGACTTTTATAAG
ATGGTAGGCACAATTGATTGAAGCATGTATGAGCCATCGGTAACCTGAAA
TAAGAAAATAATATACTTCAGTGGATGCCCTTGTTTCGCTTTCACTTTTT
GATTTTAAATGTACAGGTTAAACATTTATAAACTTTTCTCAAGTTTATTA
TTTTTGCCCCGCAGGGGCTTTTGTTGCTTCACGTAGCGGAGTTGCTCGCC
AGAAAAATATTCATGTTCAGATTCATGTTGTTTCTTCCGATTCTGAGCGG
GCTGCCGCGGTTAAAAAATGTTCGCGCGCACCT Coding sequence (CDS) from alignment at sc0000047:53397..55679- >TCONS_00004656 ID=TCONS_00004656|Name=TCONS_00004656|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000047:53397..55679- (Clytia hemisphaerica)
TTAATTAAGACTTTCGATTCAGAATCATTAACGAGCTTACGTTTTCTATT
GATTTGCTCCCTGGGCTTTTTTGGCTTCTGCAGAATAGATGAACTATTAA
CCGTACAGTTGAAGGACGTAACAATAAAATCAGCCCACCTCGAAATTTTT
CTAGAAATCTCCAAAAGTGATCAGCATCGTGATGGTAATACAATTTACGT
TTCAAGAAATGAGAACACCAAATTTTGCCCCGTGAACTTAGCAGAAAGAT
TTTTATCGCTTTCAAACGTATCCTTAACATCCAACCCTGAATGTTTTTTA
GTTCCAAGATTGATTAAAATCAAAAAAGGTCACAAGATCCATTTATCCGA
AGGAATTTCTTACACGAGAGCAAGGGAAATATTTAAAGAGAAAATAGAGG
AGGCTGAAATTAAAGGCAATTTTGGTTTACATAGTCTTAGATCAGGTGGT
GCATCTGCTGCCGCTCAAAACAACGTCAACGAAAGACTGATTTCAAAGCA
TGGTCGTTGGGCGTCCGACAGGGCTAGAAATTCATACATAAAAGACTCTA
TCGAGTACAGGTTAACAATTAGTCGCCAATTGGGAATCTAAAAATACCAA
CGAGCATGGTCAAACTGGTTGGATTGGTGTAAAGATAAAGAAGAAATCAT
GCCATTTCCAGCAAACCCCTTTTACGTAGCAATCTACCTGAAGTTCGTAT
TGAAAACTTCGAAGAAGAGTGGTACATTAACAACAGCCTTCTACGGCTTA
ATTAAGACTTTCGATTCAGAATCATTAACGAGCTTACGTTTTCTATTGAT
TTGCTCCCTGGGCTTTTTTGGCTTCTGCAGAATAGATGAACTATTAACCG
TACAGTTGAAGGACGTAACAATAAAATCAGCCCACCTCGAAATTTTTCTA
GAAATCTCCAAAAGTGATCAGCATCGTGATGGTAATACAATTTACGTTTC
AAGAAATGAGAACACCAAATTTTGCCCCGTGAACTTAGCAGAAAGATTTT
TATCGCTTTCAAACGTATCCTTAACATCCAACCCTGAATGTTTTTTAGTT
CCAAGATTGATTAAAATCAAAAAAGGTCACAAGATCCATTTATCCGAAGG
AATTTCTTACACGAGAGCAAGGGAAATATTTAAAGAGAAAATAGAGGAGG
CTGAAATTAAAGGCAATTTTGGTTTACATAGTCTTAGATCAGGTGGTGCA
TCTGCTGCCGCTCAAAACAACGTCAACGAAAGACTGATTTCAAAGCATGG
TCGTTGGGCGTCCGACAGGGCTAGAAATTCATACATAAAAGACTCTATCG
AGTACAGGTTAACAATTAGTCGCCAATTGGGAATCTAAAAATACCAACGA
GCATGGTCAAACTGGTTGGATTGGTGTAAAGATAAAGAAGAAATCATGCC
ATTTCCAGCAAACCCCTTTTACGTAGCAATCTACCTGAAGTTCGTATTGA
AAACTTCGAAGAAGAGTGGTACATTAACAACAGCCTTCTACGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004656-exon-sc0000047-1575043694:55522..55679 | TCONS_00004656-exon-sc0000047-1575043694:55522..55679 | Clytia hemisphaerica | exon |
| TCONS_00004656-exon-sc0000047-1575043694:53397..55377 | TCONS_00004656-exon-sc0000047-1575043694:53397..55377 | Clytia hemisphaerica | exon |
| TCONS_00004656-exon-sc0000047-1510915933:55522..55679 | TCONS_00004656-exon-sc0000047-1510915933:55522..55679 | Clytia hemisphaerica | exon |
| TCONS_00004656-exon-sc0000047-1510915933:53397..55377 | TCONS_00004656-exon-sc0000047-1510915933:53397..55377 | Clytia hemisphaerica | exon |
| TCONS_00004656-exon-sc0000047-1491911889:55522..55679 | TCONS_00004656-exon-sc0000047-1491911889:55522..55679 | Clytia hemisphaerica | exon |
| TCONS_00004656-exon-sc0000047-1491911889:53397..55377 | TCONS_00004656-exon-sc0000047-1491911889:53397..55377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:53397..55679 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
|
