|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004655 ID=TCONS_00004655|Name=TCONS_00004655|organism=Clytia hemisphaerica|type=transcript|length=1660bp
ATagatttcaaaactttcaaaactttcaaaacgtTCGCAGGGTTAAAACA
TCATATAAATACACTACAGATTTTTCCGCGCGAGTATGATGCTATTGGTC
AATTTTACCATATTGACAATTTTTTGTGATGACGTTTAGAATACTATTCT
TGGTGGTTCTAATTTGTTATTGGTGCAAATGTGCCAAACAAACTTGGAAT
CTGATTGCAGTCgacaaaacttttgatgatcAACCTTTTTACGAAGTGTC
TCTTATGGATGAGCGACAATGCTTTGGTCAATGTGTTTACAATAAAAAAT
GTCTCTCATTTGAGGCTTACCAAACAGCTCCTCGAAAAGTCGAATGTCGA
TTGTTTGGTTTTACTCACAGTACAACTTTGGTTGAGAAAGTTGGGGCGAA
GCTACATTCAAAAGTCGTTTACAAAAACTGTCTAGAATATTTCAGAGCAG
GTTATATAAAGAATGGAGTttacaaaataaatttgttAGGAACGCTGCGT
GATGTTTATTGCTTCATGGAAGGCGAGGGCGGAGGGTGGATGGCGTTTCA
AAGGCGTTATGATGGTTCAGTTTCATTCGAAGATAAAGGATGGGCGGAAT
ATAAAGATGGATTCGGAGATGGGTCAGgAGAATACTGGCTAGGCCTTGAA
GCATTGCATAAATTGACATCACAGCAATCTTATGATTTATATGTGTTGGC
TATGGATTTTACCGGCCGTTGGGAGAACAAACGATTCGCCGGTTTTACCA
TCGGCCCTGAGGAGCCAGAGAAATACAAATTCGACTACCGCTCTGTTTAT
GATGGAAACCAATATAGCTCTTTGGAACTTTTTGTCAACTGCAAAGGCAT
GAAATTCTCAACAAAGTTACATGATAATGATGCCGATGCTCGCAACTGCG
CCATAGTTTATCCAGCAGGTTGGTGGTATAAAGTATGTCATGCGGATCTT
ATGAATGGGAAATATTCACAAACAAGTGTTTGTGATTCTCCAGTAGCCCG
TGGTGTTCATTGGGAAGCATTTACAGGTCATGGGCAATGTTTGAAAGAAT
CTCTTTTGATGATAAGACCAAATTAAAGGACAACATTTTATATCGcatct
cctaccatttgcttacaaaGCATTTTTGGATATctgcatttttaaacaaa
agaaataaaacttTCTCTTCCTTCCGCCCCGTGCGAGCACAAATTTTGAG
AGATTATTTTGTTAACAcggttttttctttataagaatatctatgatgaa
attggccaaaaaattaagaatatgttgAGAATAACACCCAGGAATTTAGT
AACTTAACCTatgaatgccatttttagagtattttccCATTAAACTGCCA
ATTTTTTCCCAGCATTGCTTAAAGGTTCTACAATTGTTTTGTTAAGATAT
GTATTACATGCTAGATTTTGGCTGGGATTGGAtccaaacctaagaatacc
gtagaatatttcaggatgattttccccaaaaagctaagaatatttatgct
gaattgaaaaaacaccatattcttataaaaaaaagcgtgtattctaCTTT
ATCAGCACAAGAGGCACACCCTCTTTCTATGTCATAAAAATAATACAATT
GAGTCTatttaattcgaacctcttaACTCGAATGTCCCCCTTAACACGAA
CAAGTTTTCT Run BLAST on NCBI protein sequence of TCONS_00004655-protein >TCONS_00004655-protein ID=TCONS_00004655-protein|Name=TCONS_00004655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MTFRILFLVVLICYWCKCAKQTWNLIAVDKTFDDQPFYEVSLMDERQCFG
QCVYNKKCLSFEAYQTAPRKVECRLFGFTHSTTLVEKVGAKLHSKVVYKN
CLEYFRAGYIKNGVYKINLLGTLRDVYCFMEGEGGGWMAFQRRYDGSVSF
EDKGWAEYKDGFGDGSGEYWLGLEALHKLTSQQSYDLYVLAMDFTGRWEN
KRFAGFTIGPEEPEKYKFDYRSVYDGNQYSSLELFVNCKGMKFSTKLHDN
DADARNCAIVYPAGWWYKVCHADLMNGKYSQTSVCDSPVARGVHWEAFTG
HGQCLKESLLMIRPN Run BLAST on NCBI transcript from alignment at sc0000047:776667..779121+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004655 ID=TCONS_00004655|Name=TCONS_00004655|organism=Clytia hemisphaerica|type=transcript|length=2455bp|location=Sequence derived from alignment at sc0000047:776667..779121+ (Clytia hemisphaerica)
ATagatttcaaaactttcaaaactttcaaaacgtTCGCAGGGTTAAAACA
TCATATAAATACACTACAGATTTTTCCGCGCGAGTATGATGCTATTGGTC
AATTTTACCATATTGACAATTTTTTGTGATGACGTTTAGAATACTATTCT
TGGTGGTTCTAATTTGTTATTGGTGCAAATGTGCCAAACAAACTTGGAAT
CTGATTGCAGTCgacaaaacttttgatgatcAACCTTTTTACGAAGTGTC
TCTTATGGATGAGCGACAATGCTTTGGTCAATGTGTTTACAATAAAAAAT
GTCTCTCATTTGAGGCTTACCAAACAGCTCCTCGAAAAGTCGAATGTCGA
TTGTTTGGTTTTACTCACAGTACAACTTTGGTTGAGAAAGTTGGGGCGAA
GCTACATTCAAAAGTCGTTTACAAAAACTGTCTAGAATATTTCAGAGCAG
GTTATATAAAGAATGGAGTttacaaaataaatttgttAGGAACGCTGCGT
GATGTTTATTGCTTCATGGAAGGCGAGGGCGGAGGGTGGATGGCGTTTCA
AAGGCGTTATGATGGTTCAGTTTCATTCGAAGATAAAGGATGGGCGGAAT
ATAAAGATGGATTCGGAGATGGGTCAGGTGAGATAAAGTAATCTTTCTCT
ATTcgcgaatttgtattttataaCTAGCTAGAGTCGCCTGTAAGTTACAC
CTACAAAAAACAGCATTACACGTCTTTTGTGGTAATTACTTGGGGTGTAC
TGTTCATGTATGTAAAATAGCCGTAGAGCCAACTTCATCAAAGTCAACCC
TAATGCATATGCNGTATGTAAAATAGCTGTAGAGCCAACTTCATCAAAGT
CAACCCTAATGCTTATGTtcattatttcttcttttataggAGAATACTGG
CTAGGCCTTGAAGCATTGCATAAATTGACATCACAGCAATCTTATGATTT
ATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGAGAACAAACGATTCG
CCGGTTTTACCATCGGCCCTGAGGAGCCAGAGAAATACAAATTCGACTAC
CGCTCTGTTTATGATGGAAACCAATATAGCTCTTTGGAACTTTTTGTCAA
CTGCAAAGGCATGAAATTCTCAACAAAGTTACATGATAATGATGCCGATG
CTCGCAACTGCGCCATAGTTTATCCAGCAGGTGAGTGTAATACTTTTGGT
TTTTAACGTGGTTTTAATTGGTAGAGATAACATACTTTTCTGGTGATTAA
TTTGAAATCGCGTtgctttttgcctgaaaacgaaaactaaaacaaaaacg
aTTTAGCGACAGCGATGGGTcctaatgtttatgtttttgataaaacGATG
GACTTTTGTAGCGATTTCTTTACTTCAGCACCTACATCACCGCGCTCAAA
GACTTAGTTTGTATTCATTGAAAGTCTAGAAGGACACCGTTTGTGACTAC
CAACTTTGGCTGTAATGAGTAATCAGGATCTACTTGGAGATTatgtatac
cttatcggcccttattGGTGTCGCTGGTGTAATAAGAGCCGGAGTTAGGG
ATTTAAATTAAATTAGACCCGGGCCGAAAGGGGGAGCTGACGAAGAAGGG
CTGACGTAAAAGAGGCTGGTCCCAAATTAGGACCGGCATAAAAAAGGCCG
ATAAGGTAAAGTGTTTCACTCTTAAAGAAGCGAATgatatgtttttaaca
tgtCTTGTTTTAGGTTGGTGGTATAAAGTATGTCATGCGGATCTTATGAA
TGGGAAATATTCACAAACAAGTGTTTGTGATTCTCCAGTAGCCCGTGGTG
TTCATTGGGAAGCATTTACAGGTCATGGGCAATGTTTGAAAGAATCTCTT
TTGATGATAAGACCAAATTAAAGGACAACATTTTATATCGcatctcctac
catttgcttacaaaGCATTTTTGGATATctgcatttttaaacaaaagaaa
taaaacttTCTCTTCCTTCCGCCCCGTGCGAGCACAAATTTTGAGAGATT
ATTTTGTTAACAcggttttttctttataagaatatctatgatgaaattgg
ccaaaaaattaagaatatgttgAGAATAACACCCAGGAATTTAGTAACTT
AACCTatgaatgccatttttagagtattttccCATTAAACTGCCAATTTT
TTCCCAGCATTGCTTAAAGGTTCTACAATTGTTTTGTTAAGATATGTATT
ACATGCTAGATTTTGGCTGGGATTGGAtccaaacctaagaataccgtaga
atatttcaggatgattttccccaaaaagctaagaatatttatgctgaatt
gaaaaaacaccatattcttataaaaaaaagcgtgtattctaCTTTATCAG
CACAAGAGGCACACCCTCTTTCTATGTCATAAAAATAATACAATTGAGTC
TatttaattcgaacctcttaACTCGAATGTCCCCCTTAACACGAACAAGT
TTTCT Coding sequence (CDS) from alignment at sc0000047:776667..779121+ >TCONS_00004655 ID=TCONS_00004655|Name=TCONS_00004655|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000047:776667..779121+ (Clytia hemisphaerica)
ATGACGTTTAGAATACTATTCTTGGTGGTTCTAATTTGTTATTGGTGCAA
ATGTGCCAAACAAACTTGGAATCTGATTGCAGTCgacaaaacttttgatg
atcAACCTTTTTACGAAGTGTCTCTTATGGATGAGCGACAATGCTTTGGT
CAATGTGTTTACAATAAAAAATGTCTCTCATTTGAGGCTTACCAAACAGC
TCCTCGAAAAGTCGAATGTCGATTGTTTGGTTTTACTCACAGTACAACTT
TGGTTGAGAAAGTTGGGGCGAAGCTACATTCAAAAGTCGTTTACAAAAAC
TGTCTAGAATATTTCAGAGCAGGTTATATAAAGAATGGAGTttacaaaat
aaatttgttAGGAACGCTGCGTGATGTTTATTGCTTCATGGAAGGCGAGG
GCGGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTC
GAAGATAAAGGATGGGCGGAATATAAAGATGGATTCGGAGATGGGTCAGg
AGAATACTGGCTAGGCCTTGAAGCATTGCATAAATTGACATCACAGCAAT
CTTATGATTTATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGAGAAC
AAACGATTCGCCGGTTTTACCATCGGCCCTGAGGAGCCAGAGAAATACAA
ATTCGACTACCGCTCTGTTTATGATGGAAACCAATATAGCTCTTTGGAAC
TTTTTGTCAACTGCAAAGGCATGAAATTCTCAACAAAGTTACATGATAAT
GATGCCGATGCTCGCAACTGCGCCATAGTTTATCCAGCAGGTTGGTGGTA
TAAAGTATGTCATGCGGATCTTATGAATGGGAAATATTCACAAACAAGTG
TTTGTGATTCTCCAGTAGCCCGTGGTGTTCATTGGGAAGCATTTACAGGT
CATGGGCAATGTTTGAAAGAATCTCTTTTGATGATAAGACCAAATTAAAT
GACGTTTAGAATACTATTCTTGGTGGTTCTAATTTGTTATTGGTGCAAAT
GTGCCAAACAAACTTGGAATCTGATTGCAGTCgacaaaacttttgatgat
cAACCTTTTTACGAAGTGTCTCTTATGGATGAGCGACAATGCTTTGGTCA
ATGTGTTTACAATAAAAAATGTCTCTCATTTGAGGCTTACCAAACAGCTC
CTCGAAAAGTCGAATGTCGATTGTTTGGTTTTACTCACAGTACAACTTTG
GTTGAGAAAGTTGGGGCGAAGCTACATTCAAAAGTCGTTTACAAAAACTG
TCTAGAATATTTCAGAGCAGGTTATATAAAGAATGGAGTttacaaaataa
atttgttAGGAACGCTGCGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTCGA
AGATAAAGGATGGGCGGAATATAAAGATGGATTCGGAGATGGGTCAGgAG
AATACTGGCTAGGCCTTGAAGCATTGCATAAATTGACATCACAGCAATCT
TATGATTTATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGAGAACAA
ACGATTCGCCGGTTTTACCATCGGCCCTGAGGAGCCAGAGAAATACAAAT
TCGACTACCGCTCTGTTTATGATGGAAACCAATATAGCTCTTTGGAACTT
TTTGTCAACTGCAAAGGCATGAAATTCTCAACAAAGTTACATGATAATGA
TGCCGATGCTCGCAACTGCGCCATAGTTTATCCAGCAGGTTGGTGGTATA
AAGTATGTCATGCGGATCTTATGAATGGGAAATATTCACAAACAAGTGTT
TGTGATTCTCCAGTAGCCCGTGGTGTTCATTGGGAAGCATTTACAGGTCA
TGGGCAATGTTTGAAAGAATCTCTTTTGATGATAAGACCAAATTAAATGA
CGTTTAGAATACTATTCTTGGTGGTTCTAATTTGTTATTGGTGCAAATGT
GCCAAACAAACTTGGAATCTGATTGCAGTCgacaaaacttttgatgatcA
ACCTTTTTACGAAGTGTCTCTTATGGATGAGCGACAATGCTTTGGTCAAT
GTGTTTACAATAAAAAATGTCTCTCATTTGAGGCTTACCAAACAGCTCCT
CGAAAAGTCGAATGTCGATTGTTTGGTTTTACTCACAGTACAACTTTGGT
TGAGAAAGTTGGGGCGAAGCTACATTCAAAAGTCGTTTACAAAAACTGTC
TAGAATATTTCAGAGCAGGTTATATAAAGAATGGAGTttacaaaataaat
ttgttAGGAACGCTGCGTGATGTTTATTGCTTCATGGAAGGCGAGGGCGG
AGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTCGAAG
ATAAAGGATGGGCGGAATATAAAGATGGATTCGGAGATGGGTCAGgAGAA
TACTGGCTAGGCCTTGAAGCATTGCATAAATTGACATCACAGCAATCTTA
TGATTTATATGTGTTGGCTATGGATTTTACCGGCCGTTGGGAGAACAAAC
GATTCGCCGGTTTTACCATCGGCCCTGAGGAGCCAGAGAAATACAAATTC
GACTACCGCTCTGTTTATGATGGAAACCAATATAGCTCTTTGGAACTTTT
TGTCAACTGCAAAGGCATGAAATTCTCAACAAAGTTACATGATAATGATG
CCGATGCTCGCAACTGCGCCATAGTTTATCCAGCAGGTTGGTGGTATAAA
GTATGTCATGCGGATCTTATGAATGGGAAATATTCACAAACAAGTGTTTG
TGATTCTCCAGTAGCCCGTGGTGTTCATTGGGAAGCATTTACAGGTCATG
GGCAATGTTTGAAAGAATCTCTTTTGATGATAAGACCAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004655-exon-sc0000047-1491911889:776667..777293 | TCONS_00004655-exon-sc0000047-1491911889:776667..777293 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1510915933:776667..777293 | TCONS_00004655-exon-sc0000047-1510915933:776667..777293 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1575043694:776667..777293 | TCONS_00004655-exon-sc0000047-1575043694:776667..777293 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1491911889:777556..777846 | TCONS_00004655-exon-sc0000047-1491911889:777556..777846 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1510915933:777556..777846 | TCONS_00004655-exon-sc0000047-1510915933:777556..777846 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1575043694:777556..777846 | TCONS_00004655-exon-sc0000047-1575043694:777556..777846 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1491911889:778380..779121 | TCONS_00004655-exon-sc0000047-1491911889:778380..779121 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1510915933:778380..779121 | TCONS_00004655-exon-sc0000047-1510915933:778380..779121 | Clytia hemisphaerica | exon |
| TCONS_00004655-exon-sc0000047-1575043694:778380..779121 | TCONS_00004655-exon-sc0000047-1575043694:778380..779121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:776667..779121 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004655 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 5.968e-37 Identity = 87/223 (39.01%), Postives = 122/223 (54.71%), Query Frame = 3
Query: 423 KNCLEYFRAGYIKNGVYKI--NLLGTLRDVYCFMEGEGGGWMAFQRRYDGSVSFEDKGWAEYKDGFGDGSGEYWLGLEALHKLTSQQSYDLYVLAMDFTGRWENKRFAGFTIG-----PEEPEKYKFDYRSVYDGNQYSSLELFVNCKGMKFSTKLHDNDADARNCAIVYPAGWWYKVCHADLMNGKYSQTSVCDSPVARGVHWEAFTGHGQCLKESLLMIRP 1070
++CL+ +G +GVY + VYC M +GGGW FQRR DGSV+F +GW Y+DGFG +GE+WLGL+ +H LT+Q +Y+L+V DF R+ F +G PEE + Y + Y G SL + GM+F+TK D+D NCA Y WWY+ CH +NG+Y + + + A GV W ++TG LK S + IRP
Sbjct: 242 RDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFF-RGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPEE-DGYPLTV-ADYSGTAGDSL---LKHSGMRFTTKDRDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLRGA--HASYADGVEWSSWTGWQYSLKFSEMKIRP 456
The following BLAST results are available for this feature:
|
