|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004651 ID=TCONS_00004651|Name=TCONS_00004651|organism=Clytia hemisphaerica|type=transcript|length=1811bpRun BLAST on NCBI protein sequence of TCONS_00004651-protein >TCONS_00004651-protein ID=TCONS_00004651-protein|Name=TCONS_00004651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp MFQRIVTNHSIRSALTNVSKRVYQQHNLVAKNIVQNVRKKFMSGTTATTLRun BLAST on NCBI transcript from alignment at sc0000047:748202..836460+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004651 ID=TCONS_00004651|Name=TCONS_00004651|organism=Clytia hemisphaerica|type=transcript|length=88259bp|location=Sequence derived from alignment at sc0000047:748202..836460+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000047:748202..836460+ >TCONS_00004651 ID=TCONS_00004651|Name=TCONS_00004651|organism=Clytia hemisphaerica|type=CDS|length=10935bp|location=Sequence derived from alignment at sc0000047:748202..836460+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004651 vs. Swiss-Prot (Human)
Match: COX15 (Cytochrome c oxidase assembly protein COX15 homolog OS=Homo sapiens GN=COX15 PE=1 SV=1) HSP 1 Score: 372.859 bits (956), Expect = 8.260e-123 Identity = 199/349 (57.02%), Postives = 261/349 (74.79%), Query Frame = 1
Query: 376 AKKIVGYWLXXXXXXXXXXXXXXXXTRLTKSGLSMTDWHLIKGMRPPRSEEEWLKEFARYQAFPEFKLARADMTLGEFKLIFYMEWFHRMYGRFVGLAFYLPAAYLWKKGYLTKAMKPRVIVFGSLILAQGLIGWFMVRSGLDEQTMANTNEPRVSQYRLAMHLGMAFTVFSGLFYNALSHLLKENPLQYTKKLGQMKKFAHSSMALTFITAVSGAFVAGLEAGLVYNSFPKFADRWIPSDIAAINPWWRNMFENPTTTQFNHRLLGIATFSTIAATMYLSSPLALPHRARLAMNCVMGMACLQVGLGISTLLLYVPTALAATHQFGSLTLLSLAIWLNYELKTAKIPK 1422
A+++VG WLL CSG+VAGAV+LGGVTRLT+SGLSM DWHLIK M+PP S+EEW EF RYQ FPEFK+ DMTL EFK I+YME+ HRM+GR VGL + LPAAY W+KG+L++ MK RV+ L+ QGL+GW+MV+SGL+E++ ++ + PRVSQYRLA HLG A ++ + +LS LL + L T +L Q+++FAH + L F+TA+SGAFVAGL+AGLVYNSFPK + WIP D+ +P RN+FENPT QF+HR+LGI + + I +LS + LP R ++A ++ +A QVGLGISTLL+YVPT LAATHQ GSL LL+ A+WL EL+ ++PK
Sbjct: 65 AERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAEFQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSH-DIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELR--RVPK 410 The following BLAST results are available for this feature:
BLAST of TCONS_00004651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.