TCONS_00004646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004646
Unique NameTCONS_00004646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004646 ID=TCONS_00004646|Name=TCONS_00004646|organism=Clytia hemisphaerica|type=transcript|length=1473bp
cagATTAAATACAACATGAACATGGAATAAAaaacaatcaacaaaaaaat
atacaatgacaGAAAAACTTAAACCATGCTTTGGTCAACTTATAATTGGT
CCACTTGGGAGTGGGAAGACTACATACTGTCATgctgtcaaaaattttct
tactgGAATTGGAAGAAAAGTTGTGATATTTAATTTAGATCCTGCTAATG
ACAACATGCCCTTCATTCCTGATTGGGATTTAGCAGAACTGATTTGCTTA
AAAGACGTCATGAATCTTTTAAAACTTGGCCCAAATGGTGGTCTATTGTA
TTGTCTTgaatttttagagaaaaactttgaacatCTGGAAACAAAGTTAA
GAAAGTTTCAAAATGATGGTTTTTATTTCTTATTCGATTGCCCTGGTCAA
GTGGAGCTTTACACCCACCACACATCTGTACATTCTATAGTAGATCGCCT
TGGTAAACTGGATATTAGGTTAGTAGCTGTTCACTTGGTAGATTCACATT
ATTGCAGTGATGCTTCAAAATTCATATCTGTTTTGTTAACTTCTCTATCA
ACTATGTTGCGGATTGCTCTTCCACATATCAATGTTCTTTCAAAGATGGA
CCTGATCGAGAACTTTTGACATTGACTATTTCACTGAGGTTTTGGATCTA
CATTACCTGCTAGAGAACTTTAAAGAGGAtcagaaaatgggaaaatttgc
AAAGTTCAATGAAGCATTGATTGGTGTCATTCAAGATTACAGTTTGGTGT
CTTTCTCCAAACTCCATGTGGAGAACAAAGAAAGTATGttgaatttgatg
aaaattgtgGACCGTGCAAATGGATATATTTATGGTGGCTTATCCAAAGA
GAGTGATGATGTCATGGAAATGATGTCTGATAAAGTTGGTGCTGATCTAG
ATTTTGAGGCTAACTCTTAGGTTGAACAATCAGTCATTCATACAAATGTG
GAATTTATGCTAATTGAGGCGGCTCAATAGCTTCGTCCAGAAATCGACCG
GCATTGTCTTGTCACCAAAAAAGAAACCCTTTTTTGAATCAAAGAGAATC
AATGTTTTGTATGATATCTGATCTCTCTGCAAGAAATTTTGAGAGACCAG
GAACAGCTTTTCAAAACAACTACGTCATCacaaaaataattgataaaaat
acTATGATGCCATCAAAAAACAGATGATGTTAAAAATTGGTTTGAAATGG
CATCAAAATGACTTCATGGATATATTATTCGAAAGAAGAAGAATATTAAA
ACCAAAgcaaaatacattttttactgttattattaaaatatgtaaataat
ATTTCTACAAATGCTATaagttttattgtttgaagaAATATTGAAGCTCA
GTGTCAGTTTGAACAACTGGTGCATGCATCAATGATGCTTGAAACCATTG
GTATGGTCAAGAAGAAGTACTGGTTCTTTTAATGGAGAAAAGCTTTACTA
GATGTTTTAAGCTAATGTAGATA
Run BLAST on NCBI

transcript from alignment at sc0000047:703447..709629+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004646 ID=TCONS_00004646|Name=TCONS_00004646|organism=Clytia hemisphaerica|type=transcript|length=6183bp|location=Sequence derived from alignment at sc0000047:703447..709629+ (Clytia hemisphaerica)
cagATTAAATACAACATGAACATGGAATAAAaaacaatcaacaaaaaaat
atacaatgacaGAAAAACTTAAACCATGCTTTGGTCAACTTATAATTGGT
CCACTTGGGAGTGGGAAGACTACATACTGTCATgctgtcaaaaattttct
tactgGAATTGGAAGAAAAGTTGTGATATTTAATTTAGATCCTGCTAATG
ACAACATGCCCTTCATTCCTGATTGGGATTTAGCAGAACTGATTTGCTTA
AAAGACGTCATGAATCTTTTAAAACTTGGCCCAAATGGTGGTCTATTGTA
TTGTCTTgaatttttagagaaaaactttgaacatCTGGAAACAAAGTTAA
GAAAGTTTCAAAATGATGGTTTTTATTTCTTATTCGATTGCCCTGGTCAA
GTGGAGCTTTACACCCACCACACATCTGTACATTCTATAGTAGATCGCCT
TGGTAAACTGGATATTAGGGTTAGTAActaaagttttcaatttttttcat
cagaATTCCATAGTTTTTAATGCTGAATAGAACAACTTATTTGATTTTAA
TCTTCCAGGATCAAAACAAATGACATCTCTGTTTGATGTTTTTCACAAAG
CAGTCATCTTATGGTAGAAGATGTATCCGTTACCTGAAATACTTGCTCTT
TTTTTAGTTAGTAGCTGTTCACTTGGTAGATTCACATTATTGCAGTGATG
CTTCAAAATTCATATCTGTTTTGTTAACTTCTCTATCAACTATGTTGCGG
ATTGCTCTTCCACATATCAATGTTCTTTCAAAGATGGACCTGATCGAGAA
GTATGGGAAATTAGGTACctcctttctttttaaataaaacatCGCATTTT
ATGACCCTTGTTATAGCTGCAAATTCTCTCATCTCACATGGATATCACAT
AATATCAAGAAGATCTACAGAGATCTGAAGCTTTGGGATATTTGGTGCTC
ACAAcatcaaagtctaaaaaacttCAGCGGCTTTACACTTTTGggcctac
cccggtggaggtcctataaattaacctttgtccgttccttcgtttgttcg
ttcgttcgttattagcttacctcatgattggctcgtttgttttttatgat
acgaatgtgacagagcccgattttcaaaaaaaaaaaatttgggcaaattt
tggccaaaaaacagctaaaaaactggttttttggactttctgaaaaatta
ggtcgttaattttttctgactttttgcatgaaagtagggtaccatcgtag
gtaaaagatggcttaagcagatttttgcaaaaaaaattttgttggctcaa
aaaacgcatgtttatctataagaatcactattaataagcatacatcaatg
ttcttagtttaattactcaatttttttatgagatagatgttttttttgct
cagaaggGCTTAcgtttaaagaatatgtgtgtttcgacatgaaattttgg
ttgcttggcgtgtttttatagaaaaactggccaaattcaatattttttta
taagcacattatcaatctCTTAGGtcttagcttttctcgagattggctct
ttcattctttacgatttttttaacaaagatgcataactataaaccctcta
aTGTGACAagcccaattttcaaaaaaagaatttttggggcaaatttgggc
caaaaaacagctaaaaaatgggttttttagactttttgcatgaaagtagg
taaaagatggctcaagcagatttttgtaaaaaaagaatttttcagctcaa
aaaacgcatatttatcaTAATTaaactattaataagcatacatcaatgtt
cttaaaattactgaattttaatgagatatatttttttgctctcgaagtct
tgaatatgaaagaatatttcaagagcatgaaattttggtttctaaacatg
tttttttataagaaacaaatgactaattttaatagatcgtcactatttgt
gttctgaatgattgtttaatggtcacgcttatgtagatatcaattagata
tgtgttaaatgcataaccaggtaggtccataaaagtatcacttgttttta
ataaaattccttttatatatagatatatactagccgtcacccggcgtcgc
acccgccgagtagagtgttgttgaacacatcaaaagccctttggatggaa
aattttcaattgaggcgaaaataaaaaaatgtagagTTTCCAGAATacgg
ccgggtgaaaaataataattttatgaCCCGACCGCAGAcaatgggttcat
ctatatagttCATCATATAAAAAGTCAAGTTGGAGCATTCAAGCTATCAA
AGTAGTTTGGTTGTAGATATTCCGACTTGTAAATCAAGATTTGTTTGTTA
GTAGATGATACATTAGTATAtccagggcttacttcatactgtgaatactg
tttgtacataaaaaagttatctttaaagttctatttcaatgatcttatta
ctaaagttatcaaaaaaagcaaataCATTCTTTTTTCTGGCCGGCTGCGT
GAaagctttttttcttcacccACATTCCGAaaacactcatttttttattt
ttgcctgacaggaaaacttttctacattttttagatgcatgtggaagaaa
atgtcaagtttacGACAGAAgtgaaagttttccacattttaaacgcacag
ggaagaaaatgtccaaattaacagcaaaaatttccacattttaaacgcac
gtggaagaaaatttccaaattcacagcaaaattTCCACTTTTTAAACGCA
CGtaaaaaaatgtccaaattcacaaccaaaaatttccacatttttaaacg
cacgtgcaagaaatGTCCAataattcacagcaaaaatttccactttttaa
acgcacgtggaagaaaatgtccaaattcataacaaaaatttccatgtttt
aaacgcacatggaagaaaatgtccaaattcacagcaaaaatttccacttt
ttaaacgcacgtggaagaaaatgtccaaattcataacaaaaatttccatg
ttttaaacgcacgtggaagaaaatgtccaaattcacagcaaaaatttcca
cgttttaaacgcacgtggaagaaaatgtccaaattcacagcaaaaatttt
ccacgttttaaagcgcacgtgtaagaaaatgttcaaattcacaaccaaaa
gttttccacgtttaaaatgcattttaaaataccaagggaaattcaatcat
taatcaGTAAATTCAGCTccgggtttaaatttttacttcaaagctaacca
gttcttatccaaccacaaccatttggGTGCCGCATCTACCATCTGAAATG
ACAaccatcataaaaaaattagttcaaacttttttgatgttgcaagtatt
taatttttcaaatatacctAGCATGGTGGTCAAAGTTGAtttaaaatgtc
ctgtttttcaagatCAAGAATAGAAGAGATTGCATCTCTCATGCCAATCC
AAACGAAGCATCAAATCCAAGAAAGAATAATaataaaacttcatcatcaa
ccatttcttgtaacaatcacacaaaaatcaaatcaatgcaACTCATTAAG
gcataaaaacaaaagaaaaacagcGAAAGAGCAGTAGCAACCACTTGTTT
ATACGCTTCCAAAtcgggcgacgtttcccgatcggcaaggaaccgTAGGC
ATGTTTTCCGGTGACGTGTCTCAAAAAAAACGTACTCCACCTCAAAAAAG
AACACTGtactgttttcccgctcggagctcgatttaaaaagagacttgga
aaaaaatccataatggcttccccacggctcatagaaaattagacttttag
tatatagatatatattatattccttatataaatttattttttcctttcag
CTTTTGACATTGACTATTTCACTGAGGTTTTGGATCTACATTACCTGCTA
GAGAACTTTAAAGAGGAtcagaaaatgggaaaatttgcAAAGTTCAATGA
AGCATTGATTGGTGTCATTCAAGATTACAGTTTGGTGTCTTTCTCCAAAC
TCCATGTGGAGGTTCTTAATACATTTAATTAACTCTGGACTTATTTATTA
AGTCACTAGGAAGGGTTGTGTAAGTCAACAATAAATGCATTTCTATTGAT
CCGACCACAATCACTTTTATTGGTTTAACGATTTTGTCCAAAATATATCC
CGCAAACAATAAACAAAATCCCccctaccttattggtatatattttcgcg
tgttacaaattttcgcgggtacttaatttcgcgagttttatggtcaattt
tcgcgaaatttaatactgtttaaatttttcaaaattacaaaatcgcgaaa
tttaagtACATATTTAATatttcttgctttatattcccactttctgaaaa
tacctagtttagtgaatcgcaaaatttaatacacgcgaaaattttccaga
agtcggcattcgcgaaatttaaaacacgcgaaacacgttttttcgaaaga
atttcgcgattcgcgaaaatttgtaacacgcgaaaatatataccaataag
gtattaattttttcaagccatttgccaaattaaatcccctcggaaaaaaa
atttttcttttaaggtaGTTTTATATTGTAttctttacttgaaaagacac
tttaccccctggatatccgctcccttgtaaaAATTAaactccctggatat
ccacttttgaacaaaaatcatgaaccccctggatatccgatatcctcaac
agaggggcacggactatttctggaaaagcccaataattCTAAACTTTTTC
TTCCCTATTTTTTTTAGCGTGGCTGAAAACTTTTGTGCTGCAAGTAATGT
TGTCCTCACCCGGCTTACTAAATTTCTTTATTATTGTTTTATAATTTCAA
GAACAAAGAAAGTATGttgaatttgatgaaaattgtgGACCGTGCAAATG
GATATATTTATGGTGGCTTATCCAAAGAGAGTGATGATGTCATGGAAATG
ATGTCTGATAAAGTTGGTGCTGATCTAGATTTTGAGGCGTATCTTTTCCC
CTTGTTGTAATTATAGTACATTGTgtcttttgaaagttttttgtgcCAGG
TGTTTCTGAAAGGGCCTAAGAACAGAAGATCTTAAGAAATTGCCTTCTCT
TATTTGtactttttttgcttgcaactaaagatttgttttcatttttcaat
gatTTGAATCTTGATAGAGAATCTTCCATTCCAACATGCCTTTGAGATTG
CAGCAACTTTAAAAcctgttacacgttttttttttaagaaacacactttt
aagaaacatgaggctcagaatgccttaaaactaagaaacatctaagaaac
atgctgaggctgagaatgagaaaaaaacattttttaattcgtNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagaaacatgtaag
aaacatttaaggctcaaaaggccgatttcttaagaaacatcgaggctgct
tggtaaaactagtttcttaaaaaaaaacgtgtatttcaacTTAACTCACT
ATATTTTTTTACCAATATAGTAACTCTTAGGTTGAACAATCAGTCATTCA
TACAAATGTGGAATTTATGCTAATTGAGGCGGCTCAATAGCTTCGTCCAG
AAATCGACCGGCATTGTCTTGTCACCAAAAAAGAAACCCTTTTTTGAATC
AAAGAGAATCAATGTTTTGTATGATATCTGATCTCTCTGCAAGAAATTTT
GAGAGACCAGGAACAGCTTTTCAAAACAACTACGTCATCacaaaaataat
tgataaaaatacTATGATGCCATCAAAAAACAGATGATGTTAAAAATTGG
TTTGAAATGGCATCAAAATGACTTCATGGATATATTATTCGAAAGAAGAA
GAATATTAAAACCAAAgcaaaatacattttttactgttattattaaaata
tgtaaataatATTTCTACAAATGCTATaagttttattgtttgaagaAATA
TTGAAGCTCAGTGTCAGTTTGAACAACTGGTGCATGCATCAATGATGCTT
GAAACCATTGGTATGGTCAAGAAGAAGTACTGGTTCTTTTAATGGAGAAA
AGCTTTACTAGATGTTTTAAGCTAATGTAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002618XLOC_002618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004646-exon-sc0000047-1491911889:703447..703915TCONS_00004646-exon-sc0000047-1491911889:703447..703915Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1510915933:703447..703915TCONS_00004646-exon-sc0000047-1510915933:703447..703915Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1575043694:703447..703915TCONS_00004646-exon-sc0000047-1575043694:703447..703915Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1491911889:704104..704246TCONS_00004646-exon-sc0000047-1491911889:704104..704246Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1510915933:704104..704246TCONS_00004646-exon-sc0000047-1510915933:704104..704246Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1575043694:704104..704246TCONS_00004646-exon-sc0000047-1575043694:704104..704246Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1491911889:707297..707457TCONS_00004646-exon-sc0000047-1491911889:707297..707457Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1510915933:707297..707457TCONS_00004646-exon-sc0000047-1510915933:707297..707457Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1575043694:707297..707457TCONS_00004646-exon-sc0000047-1575043694:707297..707457Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1491911889:708298..708434TCONS_00004646-exon-sc0000047-1491911889:708298..708434Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1510915933:708298..708434TCONS_00004646-exon-sc0000047-1510915933:708298..708434Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1575043694:708298..708434TCONS_00004646-exon-sc0000047-1575043694:708298..708434Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1491911889:709067..709629TCONS_00004646-exon-sc0000047-1491911889:709067..709629Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1510915933:709067..709629TCONS_00004646-exon-sc0000047-1510915933:709067..709629Clytia hemisphaericaexon
TCONS_00004646-exon-sc0000047-1575043694:709067..709629TCONS_00004646-exon-sc0000047-1575043694:709067..709629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:703447..709629 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30176	1.48445	1.56229	2.38989	0.90615	0	0.616586	1.66587	0.7177	1.35587	0.752574	0.656308	0.445712	0	1.45548	0.565993	0	0.661165	0.284033	0.347338	0	0.717225	1.36895	2.68617	0	0.406338	0	1.39795	1.90779	2.59066
Blast
[Close]
BLAST of TCONS_00004646 vs. Swiss-Prot (Human)
Match: GPN2 (GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 4.266e-73
Identity = 108/180 (60.00%), Postives = 137/180 (76.11%), Query Frame = 2 
Query:   77 CFGQLIIGPLGSGKTTYCHAVKNFLTGIGRKVVIFNLDPANDNMPFIPDWDLAELICLKDVMXXXXXXXXXXXXYCLEFLEKNFEHLETKLRKFQNDGFYFLFDCPGQVELYTHHTSVHSIVDRLGKLDIRLVAVHLVDSHYCSDASKFISVLLTSLSTMLRIALPHINVLSKMDLIENF 616
             FGQ +IGP GSGKTTYC  +  FL  +GR+V + NLDPAN+ +P+    D+ EL+ L DVM+ L+LGPNGGLLYC+E+LE N + L  KL   +  G YFLFDCPGQVEL THH ++ SI  ++ + D+RL AVHLVDSHYC+D +KFISVL TSL+TML + LPHIN+LSKMDLIE++
Sbjct:    9 AFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLDPLR--GHYFLFDCPGQVELCTHHGALRSIFSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSKMDLIEHY 186

HSP 2 Score: 87.4261 bits (215), Expect = 4.266e-73
Identity = 42/101 (41.58%), Postives = 67/101 (66.34%), Query Frame = 3 
Query:  612 TFDIDYFTEVLDLHYLLENFKEDQKMGKFAKFNEALIGVIQDYSLVSFSKLHVENKESMLNLMKIVDRANGYIYGGLSKESDDVMEMMSDKVGADLDFEAN 914
             F++DY+TEVLDL YLL++   D     + + NE L+ +I+DYSLVSF  L++++KES+  +++ VD+ANGY +   ++E   +  MMS  +GAD  F + 
Sbjct:  190 AFNLDYYTEVLDLSYLLDHLASDPFFRHYRQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCF--RAQEQRSLEAMMSAAMGADFHFSST 288
The following BLAST results are available for this feature:
BLAST of TCONS_00004646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPN24.266e-7360.00GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=1 SV=... [more]
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