TCONS_00004645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004645
Unique NameTCONS_00004645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004645 ID=TCONS_00004645|Name=TCONS_00004645|organism=Clytia hemisphaerica|type=transcript|length=1489bp
ttcagATTAAATACAACATGAACATGGAATAAAaaacaatcaacaaaaaa
atatacaatgacaGAAAAACTTAAACCATGCTTTGGTCAACTTATAATTG
GTCCACTTGGGAGTGGGAAGACTACATACTGTCATgctgtcaaaaatttt
cttactgGAATTGGAAGAAAAGTTGTGATATTTAATTTAGATCCTGCTAA
TGACAACATGCCCTTCATTCCTGATTGGGATTTAGCAGAACTGATTTGCT
TAAAAGACGTCATGAATCTTTTAAAACTTGGCCCAAATGGTGGTCTATTG
TATTGTCTTgaatttttagagaaaaactttgaacatCTGGAAACAAAGTT
AAGAAAGTTTCAAAATGATGGTTTTTATTTCTTATTCGATTGCCCTGGTC
AAGTGGAGCTTTACACCCACCACACATCTGTACATTCTATAGTAGATCGC
CTTGGTAAACTGGATATTAGGTTAGTAGCTGTTCACTTGGTAGATTCACA
TTATTGCAGTGATGCTTCAAAATTCATATCTGTTTTGTTAACTTCTCTAT
CAACTATGTTGCGGATTGCTCTTCCACATATCAATGTTCTTTCAAAGATG
GACCTGATCGAGAAGTATGGGAAATTAGCTTTTGACATTGACTATTTCAC
TGAGGTTTTGGATCTACATTACCTGCTAGAGAACTTTAAAGAGGAtcaga
aaatgggaaaatttgcAAAGTTCAATGAAGCATTGATTGGTGTCATTCAA
GATTACAGTTTGGTGTCTTTCTCCAAACTCCATGTGGAGAACAAAGAAAG
TATGttgaatttgatgaaaattgtgGACCGTGCAAATGGATATATTTATG
GTGGCTTATCCAAAGAGAGTGATGATGTCATGGAAATGATGTCTGATAAA
GTTGGTGCTGATCTAGATTTTGAGGCTAACTCTTAGGTTGAACAATCAGT
CATTCATACAAATGTGGAATTTATGCTAATTGAGGCGGCTCAATAGCTTC
GTCCAGAAATCGACCGGCATTGTCTTGTCACCAAAAAAGAAACCCTTTTT
TGAATCAAAGAGAATCAATGTTTTGTATGATATCTGATCTCTCTGCAAGA
AATTTTGAGAGACCAGGAACAGCTTTTCAAAACAACTACGTCATCacaaa
aataattgataaaaatacTATGATGCCATCAAAAAACAGATGATGTTAAA
AATTGGTTTGAAATGGCATCAAAATGACTTCATGGATATATTATTCGAAA
GAAGAAGAATATTAAAACCAAAgcaaaatacattttttactgttattatt
aaaatatgtaaataatATTTCTACAAATGCTATaagttttattgtttgaa
gaAATATTGAAGCTCAGTGTCAGTTTGAACAACTGGTGCATGCATCAATG
ATGCTTGAAACCATTGGTATGGTCAAGAAGAAGTACTGGTTCTTTTAATG
GAGAAAAGCTTTACTAGATGTTTTAAGCTAATGTAGATA
Run BLAST on NCBI

protein sequence of TCONS_00004645-protein

>TCONS_00004645-protein ID=TCONS_00004645-protein|Name=TCONS_00004645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MTEKLKPCFGQLIIGPLGSGKTTYCHAVKNFLTGIGRKVVIFNLDPANDN
MPFIPDWDLAELICLKDVMNLLKLGPNGGLLYCLEFLEKNFEHLETKLRK
FQNDGFYFLFDCPGQVELYTHHTSVHSIVDRLGKLDIRLVAVHLVDSHYC
SDASKFISVLLTSLSTMLRIALPHINVLSKMDLIEKYGKLAFDIDYFTEV
LDLHYLLENFKEDQKMGKFAKFNEALIGVIQDYSLVSFSKLHVENKESML
NLMKIVDRANGYIYGGLSKESDDVMEMMSDKVGADLDFEANS
Run BLAST on NCBI

transcript from alignment at sc0000047:703445..709629+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004645 ID=TCONS_00004645|Name=TCONS_00004645|organism=Clytia hemisphaerica|type=transcript|length=6185bp|location=Sequence derived from alignment at sc0000047:703445..709629+ (Clytia hemisphaerica)
ttcagATTAAATACAACATGAACATGGAATAAAaaacaatcaacaaaaaa
atatacaatgacaGAAAAACTTAAACCATGCTTTGGTCAACTTATAATTG
GTCCACTTGGGAGTGGGAAGACTACATACTGTCATgctgtcaaaaatttt
cttactgGAATTGGAAGAAAAGTTGTGATATTTAATTTAGATCCTGCTAA
TGACAACATGCCCTTCATTCCTGATTGGGATTTAGCAGAACTGATTTGCT
TAAAAGACGTCATGAATCTTTTAAAACTTGGCCCAAATGGTGGTCTATTG
TATTGTCTTgaatttttagagaaaaactttgaacatCTGGAAACAAAGTT
AAGAAAGTTTCAAAATGATGGTTTTTATTTCTTATTCGATTGCCCTGGTC
AAGTGGAGCTTTACACCCACCACACATCTGTACATTCTATAGTAGATCGC
CTTGGTAAACTGGATATTAGGGTTAGTAActaaagttttcaatttttttc
atcagaATTCCATAGTTTTTAATGCTGAATAGAACAACTTATTTGATTTT
AATCTTCCAGGATCAAAACAAATGACATCTCTGTTTGATGTTTTTCACAA
AGCAGTCATCTTATGGTAGAAGATGTATCCGTTACCTGAAATACTTGCTC
TTTTTTTAGTTAGTAGCTGTTCACTTGGTAGATTCACATTATTGCAGTGA
TGCTTCAAAATTCATATCTGTTTTGTTAACTTCTCTATCAACTATGTTGC
GGATTGCTCTTCCACATATCAATGTTCTTTCAAAGATGGACCTGATCGAG
AAGTATGGGAAATTAGGTACctcctttctttttaaataaaacatCGCATT
TTATGACCCTTGTTATAGCTGCAAATTCTCTCATCTCACATGGATATCAC
ATAATATCAAGAAGATCTACAGAGATCTGAAGCTTTGGGATATTTGGTGC
TCACAAcatcaaagtctaaaaaacttCAGCGGCTTTACACTTTTGggcct
accccggtggaggtcctataaattaacctttgtccgttccttcgtttgtt
cgttcgttcgttattagcttacctcatgattggctcgtttgttttttatg
atacgaatgtgacagagcccgattttcaaaaaaaaaaaatttgggcaaat
tttggccaaaaaacagctaaaaaactggttttttggactttctgaaaaat
taggtcgttaattttttctgactttttgcatgaaagtagggtaccatcgt
aggtaaaagatggcttaagcagatttttgcaaaaaaaattttgttggctc
aaaaaacgcatgtttatctataagaatcactattaataagcatacatcaa
tgttcttagtttaattactcaatttttttatgagatagatgttttttttg
ctcagaaggGCTTAcgtttaaagaatatgtgtgtttcgacatgaaatttt
ggttgcttggcgtgtttttatagaaaaactggccaaattcaatatttttt
tataagcacattatcaatctCTTAGGtcttagcttttctcgagattggct
ctttcattctttacgatttttttaacaaagatgcataactataaaccctc
taaTGTGACAagcccaattttcaaaaaaagaatttttggggcaaatttgg
gccaaaaaacagctaaaaaatgggttttttagactttttgcatgaaagta
ggtaaaagatggctcaagcagatttttgtaaaaaaagaatttttcagctc
aaaaaacgcatatttatcaTAATTaaactattaataagcatacatcaatg
ttcttaaaattactgaattttaatgagatatatttttttgctctcgaagt
cttgaatatgaaagaatatttcaagagcatgaaattttggtttctaaaca
tgtttttttataagaaacaaatgactaattttaatagatcgtcactattt
gtgttctgaatgattgtttaatggtcacgcttatgtagatatcaattaga
tatgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtttt
taataaaattccttttatatatagatatatactagccgtcacccggcgtc
gcacccgccgagtagagtgttgttgaacacatcaaaagccctttggatgg
aaaattttcaattgaggcgaaaataaaaaaatgtagagTTTCCAGAATac
ggccgggtgaaaaataataattttatgaCCCGACCGCAGAcaatgggttc
atctatatagttCATCATATAAAAAGTCAAGTTGGAGCATTCAAGCTATC
AAAGTAGTTTGGTTGTAGATATTCCGACTTGTAAATCAAGATTTGTTTGT
TAGTAGATGATACATTAGTATAtccagggcttacttcatactgtgaatac
tgtttgtacataaaaaagttatctttaaagttctatttcaatgatcttat
tactaaagttatcaaaaaaagcaaataCATTCTTTTTTCTGGCCGGCTGC
GTGAaagctttttttcttcacccACATTCCGAaaacactcatttttttat
ttttgcctgacaggaaaacttttctacattttttagatgcatgtggaaga
aaatgtcaagtttacGACAGAAgtgaaagttttccacattttaaacgcac
agggaagaaaatgtccaaattaacagcaaaaatttccacattttaaacgc
acgtggaagaaaatttccaaattcacagcaaaattTCCACTTTTTAAACG
CACGtaaaaaaatgtccaaattcacaaccaaaaatttccacatttttaaa
cgcacgtgcaagaaatGTCCAataattcacagcaaaaatttccacttttt
aaacgcacgtggaagaaaatgtccaaattcataacaaaaatttccatgtt
ttaaacgcacatggaagaaaatgtccaaattcacagcaaaaatttccact
ttttaaacgcacgtggaagaaaatgtccaaattcataacaaaaatttcca
tgttttaaacgcacgtggaagaaaatgtccaaattcacagcaaaaatttc
cacgttttaaacgcacgtggaagaaaatgtccaaattcacagcaaaaatt
ttccacgttttaaagcgcacgtgtaagaaaatgttcaaattcacaaccaa
aagttttccacgtttaaaatgcattttaaaataccaagggaaattcaatc
attaatcaGTAAATTCAGCTccgggtttaaatttttacttcaaagctaac
cagttcttatccaaccacaaccatttggGTGCCGCATCTACCATCTGAAA
TGACAaccatcataaaaaaattagttcaaacttttttgatgttgcaagta
tttaatttttcaaatatacctAGCATGGTGGTCAAAGTTGAtttaaaatg
tcctgtttttcaagatCAAGAATAGAAGAGATTGCATCTCTCATGCCAAT
CCAAACGAAGCATCAAATCCAAGAAAGAATAATaataaaacttcatcatc
aaccatttcttgtaacaatcacacaaaaatcaaatcaatgcaACTCATTA
AGgcataaaaacaaaagaaaaacagcGAAAGAGCAGTAGCAACCACTTGT
TTATACGCTTCCAAAtcgggcgacgtttcccgatcggcaaggaaccgTAG
GCATGTTTTCCGGTGACGTGTCTCAAAAAAAACGTACTCCACCTCAAAAA
AGAACACTGtactgttttcccgctcggagctcgatttaaaaagagacttg
gaaaaaaatccataatggcttccccacggctcatagaaaattagactttt
agtatatagatatatattatattccttatataaatttattttttcctttc
agCTTTTGACATTGACTATTTCACTGAGGTTTTGGATCTACATTACCTGC
TAGAGAACTTTAAAGAGGAtcagaaaatgggaaaatttgcAAAGTTCAAT
GAAGCATTGATTGGTGTCATTCAAGATTACAGTTTGGTGTCTTTCTCCAA
ACTCCATGTGGAGGTTCTTAATACATTTAATTAACTCTGGACTTATTTAT
TAAGTCACTAGGAAGGGTTGTGTAAGTCAACAATAAATGCATTTCTATTG
ATCCGACCACAATCACTTTTATTGGTTTAACGATTTTGTCCAAAATATAT
CCCGCAAACAATAAACAAAATCCCccctaccttattggtatatattttcg
cgtgttacaaattttcgcgggtacttaatttcgcgagttttatggtcaat
tttcgcgaaatttaatactgtttaaatttttcaaaattacaaaatcgcga
aatttaagtACATATTTAATatttcttgctttatattcccactttctgaa
aatacctagtttagtgaatcgcaaaatttaatacacgcgaaaattttcca
gaagtcggcattcgcgaaatttaaaacacgcgaaacacgttttttcgaaa
gaatttcgcgattcgcgaaaatttgtaacacgcgaaaatatataccaata
aggtattaattttttcaagccatttgccaaattaaatcccctcggaaaaa
aaatttttcttttaaggtaGTTTTATATTGTAttctttacttgaaaagac
actttaccccctggatatccgctcccttgtaaaAATTAaactccctggat
atccacttttgaacaaaaatcatgaaccccctggatatccgatatcctca
acagaggggcacggactatttctggaaaagcccaataattCTAAACTTTT
TCTTCCCTATTTTTTTTAGCGTGGCTGAAAACTTTTGTGCTGCAAGTAAT
GTTGTCCTCACCCGGCTTACTAAATTTCTTTATTATTGTTTTATAATTTC
AAGAACAAAGAAAGTATGttgaatttgatgaaaattgtgGACCGTGCAAA
TGGATATATTTATGGTGGCTTATCCAAAGAGAGTGATGATGTCATGGAAA
TGATGTCTGATAAAGTTGGTGCTGATCTAGATTTTGAGGCGTATCTTTTC
CCCTTGTTGTAATTATAGTACATTGTgtcttttgaaagttttttgtgcCA
GGTGTTTCTGAAAGGGCCTAAGAACAGAAGATCTTAAGAAATTGCCTTCT
CTTATTTGtactttttttgcttgcaactaaagatttgttttcatttttca
atgatTTGAATCTTGATAGAGAATCTTCCATTCCAACATGCCTTTGAGAT
TGCAGCAACTTTAAAAcctgttacacgttttttttttaagaaacacactt
ttaagaaacatgaggctcagaatgccttaaaactaagaaacatctaagaa
acatgctgaggctgagaatgagaaaaaaacattttttaattcgtNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagaaacatgta
agaaacatttaaggctcaaaaggccgatttcttaagaaacatcgaggctg
cttggtaaaactagtttcttaaaaaaaaacgtgtatttcaacTTAACTCA
CTATATTTTTTTACCAATATAGTAACTCTTAGGTTGAACAATCAGTCATT
CATACAAATGTGGAATTTATGCTAATTGAGGCGGCTCAATAGCTTCGTCC
AGAAATCGACCGGCATTGTCTTGTCACCAAAAAAGAAACCCTTTTTTGAA
TCAAAGAGAATCAATGTTTTGTATGATATCTGATCTCTCTGCAAGAAATT
TTGAGAGACCAGGAACAGCTTTTCAAAACAACTACGTCATCacaaaaata
attgataaaaatacTATGATGCCATCAAAAAACAGATGATGTTAAAAATT
GGTTTGAAATGGCATCAAAATGACTTCATGGATATATTATTCGAAAGAAG
AAGAATATTAAAACCAAAgcaaaatacattttttactgttattattaaaa
tatgtaaataatATTTCTACAAATGCTATaagttttattgtttgaagaAA
TATTGAAGCTCAGTGTCAGTTTGAACAACTGGTGCATGCATCAATGATGC
TTGAAACCATTGGTATGGTCAAGAAGAAGTACTGGTTCTTTTAATGGAGA
AAAGCTTTACTAGATGTTTTAAGCTAATGTAGATA

Coding sequence (CDS) from alignment at sc0000047:703445..709629+

>TCONS_00004645 ID=TCONS_00004645|Name=TCONS_00004645|organism=Clytia hemisphaerica|type=CDS|length=4395bp|location=Sequence derived from alignment at sc0000047:703445..709629+ (Clytia hemisphaerica)
atgacaGAAAAACTTAAACCATGCTTTGGTCAACTTATAATTGGTCCACT
TGGGAGTGGGAAGACTACATACTGTCATgctgtcaaaaattttcttactg
GAATTGGAAGAAAAGTTGTGATATTTAATTTAGATCCTGCTAATGACAAC
ATGCCCTTCATTCCTGATTGGGATTTAGCAGAACTGATTTGCTTAAAAGA
CGTCATGAATCTTTTAAAACTTGGCCCAAATGGTGGTCTATTGTATTGTC
TTgaatttttagagaaaaactttgaacatCTGGAAACAAAGTTAAGAAAG
TTTCAAAATGATGGTTTTTATTTCTTATTCGATTGCCCTGGTCAAGTGGA
GCTTTACACCCACCACACATCTGTACATTCTATAGTAGATCGCCTTGGTA
AACTGGATATTAGGTTAGTAGCTGTTCACTTGGTAGATTCACATTATTGC
AGTGATGCTTCAAAATTCATATCTGTTTTGTTAACTTCTCTATCAACTAT
GTTGCGGATTGCTCTTCCACATATCAATGTTCTTTCAAAGATGGACCTGA
TCGAGAAGTATGGGAAATTAGCTTTTGACATTGACTATTTCACTGAGGTT
TTGGATCTACATTACCTGCTAGAGAACTTTAAAGAGGAtcagaaaatggg
aaaatttgcAAAGTTCAATGAAGCATTGATTGGTGTCATTCAAGATTACA
GTTTGGTGTCTTTCTCCAAACTCCATGTGGAGAACAAAGAAAGTATGttg
aatttgatgaaaattgtgGACCGTGCAAATGGATATATTTATGGTGGCTT
ATCCAAAGAGAGTGATGATGTCATGGAAATGATGTCTGATAAAGTTGGTG
CTGATCTAGATTTTGAGGCTAACTCTTAGatgacaGAAAAACTTAAACCA
TGCTTTGGTCAACTTATAATTGGTCCACTTGGGAGTGGGAAGACTACATA
CTGTCATgctgtcaaaaattttcttactgGAATTGGAAGAAAAGTTGTGA
TATTTAATTTAGATCCTGCTAATGACAACATGCCCTTCATTCCTGATTGG
GATTTAGCAGAACTGATTTGCTTAAAAGACGTCATGAATCTTTTAAAACT
TGGCCCAAATGGTGGTCTATTGTATTGTCTTgaatttttagagaaaaact
ttgaacatCTGGAAACAAAGTTAAGAAAGTTTCAAAATGATGGTTTTTAT
TTCTTATTCGATTGCCCTGGTCAAGTGGAGCTTTACACCCACCACACATC
TGTACATTCTATAGTAGATCGCCTTGGTAAACTGGATATTAGGTTAGTAG
CTGTTCACTTGGTAGATTCACATTATTGCAGTGATGCTTCAAAATTCATA
TCTGTTTTGTTAACTTCTCTATCAACTATGTTGCGGATTGCTCTTCCACA
TATCAATGTTCTTTCAAAGATGGACCTGATCGAGAAGTATGGGAAATTAG
CTTTTGACATTGACTATTTCACTGAGGTTTTGGATCTACATTACCTGCTA
GAGAACTTTAAAGAGGAtcagaaaatgggaaaatttgcAAAGTTCAATGA
AGCATTGATTGGTGTCATTCAAGATTACAGTTTGGTGTCTTTCTCCAAAC
TCCATGTGGAGAACAAAGAAAGTATGttgaatttgatgaaaattgtgGAC
CGTGCAAATGGATATATTTATGGTGGCTTATCCAAAGAGAGTGATGATGT
CATGGAAATGATGTCTGATAAAGTTGGTGCTGATCTAGATTTTGAGGCTA
ACTCTTAGatgacaGAAAAACTTAAACCATGCTTTGGTCAACTTATAATT
GGTCCACTTGGGAGTGGGAAGACTACATACTGTCATgctgtcaaaaattt
tcttactgGAATTGGAAGAAAAGTTGTGATATTTAATTTAGATCCTGCTA
ATGACAACATGCCCTTCATTCCTGATTGGGATTTAGCAGAACTGATTTGC
TTAAAAGACGTCATGAATCTTTTAAAACTTGGCCCAAATGGTGGTCTATT
GTATTGTCTTgaatttttagagaaaaactttgaacatCTGGAAACAAAGT
TAAGAAAGTTTCAAAATGATGGTTTTTATTTCTTATTCGATTGCCCTGGT
CAAGTGGAGCTTTACACCCACCACACATCTGTACATTCTATAGTAGATCG
CCTTGGTAAACTGGATATTAGGTTAGTAGCTGTTCACTTGGTAGATTCAC
ATTATTGCAGTGATGCTTCAAAATTCATATCTGTTTTGTTAACTTCTCTA
TCAACTATGTTGCGGATTGCTCTTCCACATATCAATGTTCTTTCAAAGAT
GGACCTGATCGAGAAGTATGGGAAATTAGCTTTTGACATTGACTATTTCA
CTGAGGTTTTGGATCTACATTACCTGCTAGAGAACTTTAAAGAGGAtcag
aaaatgggaaaatttgcAAAGTTCAATGAAGCATTGATTGGTGTCATTCA
AGATTACAGTTTGGTGTCTTTCTCCAAACTCCATGTGGAGAACAAAGAAA
GTATGttgaatttgatgaaaattgtgGACCGTGCAAATGGATATATTTAT
GGTGGCTTATCCAAAGAGAGTGATGATGTCATGGAAATGATGTCTGATAA
AGTTGGTGCTGATCTAGATTTTGAGGCTAACTCTTAGatgacaGAAAAAC
TTAAACCATGCTTTGGTCAACTTATAATTGGTCCACTTGGGAGTGGGAAG
ACTACATACTGTCATgctgtcaaaaattttcttactgGAATTGGAAGAAA
AGTTGTGATATTTAATTTAGATCCTGCTAATGACAACATGCCCTTCATTC
CTGATTGGGATTTAGCAGAACTGATTTGCTTAAAAGACGTCATGAATCTT
TTAAAACTTGGCCCAAATGGTGGTCTATTGTATTGTCTTgaatttttaga
gaaaaactttgaacatCTGGAAACAAAGTTAAGAAAGTTTCAAAATGATG
GTTTTTATTTCTTATTCGATTGCCCTGGTCAAGTGGAGCTTTACACCCAC
CACACATCTGTACATTCTATAGTAGATCGCCTTGGTAAACTGGATATTAG
GTTAGTAGCTGTTCACTTGGTAGATTCACATTATTGCAGTGATGCTTCAA
AATTCATATCTGTTTTGTTAACTTCTCTATCAACTATGTTGCGGATTGCT
CTTCCACATATCAATGTTCTTTCAAAGATGGACCTGATCGAGAAGTATGG
GAAATTAGCTTTTGACATTGACTATTTCACTGAGGTTTTGGATCTACATT
ACCTGCTAGAGAACTTTAAAGAGGAtcagaaaatgggaaaatttgcAAAG
TTCAATGAAGCATTGATTGGTGTCATTCAAGATTACAGTTTGGTGTCTTT
CTCCAAACTCCATGTGGAGAACAAAGAAAGTATGttgaatttgatgaaaa
ttgtgGACCGTGCAAATGGATATATTTATGGTGGCTTATCCAAAGAGAGT
GATGATGTCATGGAAATGATGTCTGATAAAGTTGGTGCTGATCTAGATTT
TGAGGCTAACTCTTAGatgacaGAAAAACTTAAACCATGCTTTGGTCAAC
TTATAATTGGTCCACTTGGGAGTGGGAAGACTACATACTGTCATgctgtc
aaaaattttcttactgGAATTGGAAGAAAAGTTGTGATATTTAATTTAGA
TCCTGCTAATGACAACATGCCCTTCATTCCTGATTGGGATTTAGCAGAAC
TGATTTGCTTAAAAGACGTCATGAATCTTTTAAAACTTGGCCCAAATGGT
GGTCTATTGTATTGTCTTgaatttttagagaaaaactttgaacatCTGGA
AACAAAGTTAAGAAAGTTTCAAAATGATGGTTTTTATTTCTTATTCGATT
GCCCTGGTCAAGTGGAGCTTTACACCCACCACACATCTGTACATTCTATA
GTAGATCGCCTTGGTAAACTGGATATTAGGTTAGTAGCTGTTCACTTGGT
AGATTCACATTATTGCAGTGATGCTTCAAAATTCATATCTGTTTTGTTAA
CTTCTCTATCAACTATGTTGCGGATTGCTCTTCCACATATCAATGTTCTT
TCAAAGATGGACCTGATCGAGAAGTATGGGAAATTAGCTTTTGACATTGA
CTATTTCACTGAGGTTTTGGATCTACATTACCTGCTAGAGAACTTTAAAG
AGGAtcagaaaatgggaaaatttgcAAAGTTCAATGAAGCATTGATTGGT
GTCATTCAAGATTACAGTTTGGTGTCTTTCTCCAAACTCCATGTGGAGAA
CAAAGAAAGTATGttgaatttgatgaaaattgtgGACCGTGCAAATGGAT
ATATTTATGGTGGCTTATCCAAAGAGAGTGATGATGTCATGGAAATGATG
TCTGATAAAGTTGGTGCTGATCTAGATTTTGAGGCTAACTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002618XLOC_002618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004645-exon-sc0000047-1491911889:703445..703915TCONS_00004645-exon-sc0000047-1491911889:703445..703915Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1510915933:703445..703915TCONS_00004645-exon-sc0000047-1510915933:703445..703915Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1575043694:703445..703915TCONS_00004645-exon-sc0000047-1575043694:703445..703915Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1491911889:704104..704260TCONS_00004645-exon-sc0000047-1491911889:704104..704260Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1510915933:704104..704260TCONS_00004645-exon-sc0000047-1510915933:704104..704260Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1575043694:704104..704260TCONS_00004645-exon-sc0000047-1575043694:704104..704260Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1491911889:707297..707457TCONS_00004645-exon-sc0000047-1491911889:707297..707457Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1510915933:707297..707457TCONS_00004645-exon-sc0000047-1510915933:707297..707457Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1575043694:707297..707457TCONS_00004645-exon-sc0000047-1575043694:707297..707457Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1491911889:708298..708434TCONS_00004645-exon-sc0000047-1491911889:708298..708434Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1510915933:708298..708434TCONS_00004645-exon-sc0000047-1510915933:708298..708434Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1575043694:708298..708434TCONS_00004645-exon-sc0000047-1575043694:708298..708434Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1491911889:709067..709629TCONS_00004645-exon-sc0000047-1491911889:709067..709629Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1510915933:709067..709629TCONS_00004645-exon-sc0000047-1510915933:709067..709629Clytia hemisphaericaexon
TCONS_00004645-exon-sc0000047-1575043694:709067..709629TCONS_00004645-exon-sc0000047-1575043694:709067..709629Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004645-proteinTCONS_00004645-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:703445..709629 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.371	40.8606	31.0951	26.8078	15.7383	11.6079	17.7429	19.3054	17.159	14.7467	13.859	11.2766	9.67996	9.74408	11.4212	10.9262	18.5183	14.6382	6.08369	7.61159	17.0706	15.7616	43.3305	35.6298	11.4868	13.3031	9.08331	6.32602	20.4813	23.2059
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004130Gpn
IPR027417P-loop_NTPase
Blast
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BLAST of TCONS_00004645 vs. Swiss-Prot (Human)
Match: GPN2 (GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=1 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.488e-98
Identity = 158/304 (51.97%), Postives = 217/304 (71.38%), Query Frame = 1 
Query:   82 FGQLIIGPLGSGKTTYCHAVKNFLTGIGRKVVIFNLDPANDNMPFIPDWDLAELICLKDVMXXXXXXXXXXXXYCLEFLEKNFEHLETKLRKFQNDGFYFLFDCPGQVELYTHHTSVHSIVDRLGKLDIRLVAVHLVDSHYCSDASKFISVLLTSLSTMLRIALPHINVLSKMDLIEKYGKLAFDIDYFTEVLDLHYLLENFKEDQKMGKFAKFNEALIGVIQDYSLVSFSKLHVENKESMLNLMKIVDRANGYIYGGLSKESDDVMEMMSDKVGADLDFEANS*VEQSVIHTNVEFMLIEAAQ 993
            FGQ +IGP GSGKTTYC  +  FL  +GR+V + NLDPAN+ +P+    D+ EL+ L DVM+ L+LGPNGGLLYC+E+LE N + L  KL   +  G YFLFDCPGQVEL THH ++ SI  ++ + D+RL AVHLVDSHYC+D +KFISVL TSL+TML + LPHIN+LSKMDLIE YGKLAF++DY+TEVLDL YLL++   D     + + NE L+ +I+DYSLVSF  L++++KES+  +++ VD+ANGY +   ++E   +  MMS  +GAD  F +   +++  +  + + +  EA Q
Sbjct:   10 FGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLDPLR--GHYFLFDCPGQVELCTHHGALRSIFSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLDHLASDPFFRHYRQLNEKLVQLIEDYSLVSFIPLNIQDKESIQRVLQAVDKANGYCF--RAQEQRSLEAMMSAAMGADFHFSSTLGIQEKYLAPSNQSVEQEAMQ 309
The following BLAST results are available for this feature:
BLAST of TCONS_00004645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPN21.488e-9851.97GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=1 SV=... [more]
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