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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004644 ID=TCONS_00004644|Name=TCONS_00004644|organism=Clytia hemisphaerica|type=transcript|length=1208bp
AAAGAGATAAAGATATTTTGAAACCGTGTCAAAATCATTCAAATTATTCT
GAAGAGTCGAAAACATTAGCAAATTATAGCTTGGTAAAAGTTCACCCAAT
AAAAAATGATGGTGCAAAGCCATTACGTATAGAAATCCAAACTTTTGACC
TcaataaaaatccgaaaacactCGGTGGTGATTATTGGCTTGGGTTTTTA
GAGATCAAAACTATGAAGTATGCACTCCGCTTCATAGACTATGGAAATGG
AAGATATATTGCATACTTTAGACCACATCTTGCTGGATCGTATACTTTGC
ACCTCACTTTAGAGCATAGTCTATGTGACGGATTACTAGATCCACCATCG
AATTGGTTTCAATTAGGTGACTCACACGGGCGATACCAAAACGAAGATGG
TTTTAAAATTTCCGATACTTTACTTACTGAAGCCATTCAACCAATAAATT
TCGAAGTACCATCATCTGAAATCAAAAACAGAAAAGCCAATTTAAAATGT
CAAAGGGAGAATTGTATTCTTAATACAAATCATGGTTATTGGAGTGGAAA
AAACTTCATTGATTTGGCAACAGGGCGACCTGTAACCGAATTTGTGAGCA
GAAAATTGAAGCGAAAGTTGAAATCCTTTGCTGCATTCGGTGACTCGCTG
ACATATCGGTTCTATGGATTAATCAAAGAAAAATGCTTGAAACTGTTCTA
TTTCTGTAATCCTGTCTATACTTGGTCTtataaagttaagaaaaaagagc
tgaaaaacaaaatcatttatGATGGACTAGATTTCGACGAATCGCGTTTC
TTGGGTGAAATCCATGCCGCAATGAAAGGAAAAACTgtctttttgatcaa
ttttggtCTCCACCATGTTTCAACACTGCCGATGGAACGTTGTTTTAGAT
TATTCCAACAATTTATTAAACTGGTTAAGATAAAGCGCAAGAAAGGGATT
GGTCCGTTGGTCATTTGGAAAACAACAACTCCACCCTTCTTGGAAAATAG
GCAAGATAAAACAAAGAATGCAGATTGGCATCACTATCGCACAAAACAGa
ggATAGAAGTATGGAATAGTTATACAATAGAAGAATGCTGCAAAGCTGGT
ATAGATGTGCTTGATGTCTATGAAATGGCACTATCGTCACCAAAAAAGAC
ATTAGATGGAGTTCATTACCCGAATACTGTATTTGAATCTGCTGAAAatg
atttattg Run BLAST on NCBI protein sequence of TCONS_00004644-protein >TCONS_00004644-protein ID=TCONS_00004644-protein|Name=TCONS_00004644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
RDKDILKPCQNHSNYSEESKTLANYSLVKVHPIKNDGAKPLRIEIQTFDL
NKNPKTLGGDYWLGFLEIKTMKYALRFIDYGNGRYIAYFRPHLAGSYTLH
LTLEHSLCDGLLDPPSNWFQLGDSHGRYQNEDGFKISDTLLTEAIQPINF
EVPSSEIKNRKANLKCQRENCILNTNHGYWSGKNFIDLATGRPVTEFVSR
KLKRKLKSFAAFGDSLTYRFYGLIKEKCLKLFYFCNPVYTWSYKVKKKEL
KNKIIYDGLDFDESRFLGEIHAAMKGKTVFLINFGLHHVSTLPMERCFRL
FQQFIKLVKIKRKKGIGPLVIWKTTTPPFLENRQDKTKNADWHHYRTKQR
IEVWNSYTIEECCKAGIDVLDVYEMALSSPKKTLDGVHYPNTVFESAEND
LL Run BLAST on NCBI transcript from alignment at sc0000047:665071..668910+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004644 ID=TCONS_00004644|Name=TCONS_00004644|organism=Clytia hemisphaerica|type=transcript|length=3840bp|location=Sequence derived from alignment at sc0000047:665071..668910+ (Clytia hemisphaerica)
AAAGAGATAAAGATATTTTGAAACCGTGTCAAAATCATTCAAATTATTCT
GAAGAGTCGAAAACATTAGCAAATTATAGCTTGGTAAAAGTTCACCCAAT
AAAAAATGATGGTGCAAAGCCATTACGTATAGAAATCCAAACTTTTGACC
TcaataaaaatccgaaaacactCGGTGGTGATTATTGGCTTGGGTTTTTA
GAGATCAAAACTATGAAGTATGCACTCCGCTTCATAGACTATGGAAATGG
AAGATATATTGCATACTTTAGACCACATCTTGCTGGATCGTATACTTTGC
ACCTCACTTTAGAGCATAGTCTATGTGACGGATTACTAGATCCACCATCG
AATTGGTTTCAATTAGGTGAGTTGAGTAGTTAGAAGGAACGGACGCGctt
attattgttattgttagGTTAACCTCATCCCCATGTATcacaggctttat
ttacgttacttttATGGACGCCAGGTTTTCTTGGTCTCTTGTGATAAATG
CTTGAttgagaccatgttcagacgtcaCGGTTCCGTATCGTTCCGAAACG
AACCCGTTCCGAACCAAGTGTGAACGTTAATAAATTCGAAAcctcaaaaa
agaagacgtcataaagcaaaacagatcgaaacggtttcgctccactataA
ACTTCGGAAccgaactgctccgttttcttgctccgaaacgttccgaaacc
aatatgaacacttcCTATCCTTAAAGAAAACCATGCTAGAACGATAgaaa
accgtaacgtctgattTTGGCCTGAGAGAATCTTAGACTActttatctta
tttttttttgtctctCTTTGACTCGAAGTCTTCATAACTCTGACGATTAC
TGTTTCTGCTTGGGGTTTCAGGTATAATAGAGACTCAAATGTATAATTTC
GCTTCGTCTAAAGAAGTGCTTTGGTTTTTGACGAGCTCCGACAAACAACT
GTTGCTATACAATAAATTTCTTACCATATGAATAAAAAGCACAAAATATC
ATCTTCTTTGGAGACTTTTTCTATCGaggtagactatgttatagtctaag
acgaatcactatctaagaaaaaagctcaaagccgaagaaaattcacaaac
gagtttttttgccgaaaagagtttacagtcggtcgAGTTGCCagttcttc
gaaactctcccgccgatttttttccgtataccgccataacaccataccgc
cattttttcccgcctttactatcactgtaacatATGATAACATCGTCTAC
TATCGAGGAGGCCCCTCCCCAGCAGTATTCGTGATGGTGTGATTGGCGTT
TTTCAAGTTCGTGATTTCgggatttaagattttaaagtgcgtGATTGCAT
GATCGGAAGACCAACGTgatcaacgtgatcgtgatagaaaggaaatttaa
ttcgttaacgtgatttggaattttttttgtgtaatTTAAAAGGtgactgg
gggggcctcatcGAGAATACAAAACAGCAAagttatctgaaaaattttca
tttttNaaacggtttcgctccactataAACTTCGGAAccgaactgctccg
ttttcttgctccgaaacgttccgaaaccaatatgaacacttcCTATCCGT
AAAGAAAACCATGCTAGAACGATAgaaaaccgtaacgtctgattTTGGCC
TGAGAGAATCTTAGACTActttatcttattttttttgtctcTCTTTGACT
CGAAGTCTTCATAACTCTGACGATTACTGTTTCTGCTTGGGGTTTCAGGT
ATAATAGAGACTCAAATGTATAATTTCGCTTCGTCTAAAGAAGTGCTTTG
GTTTTTGACGAGCTCCGACAAACAACTGTTGCTATACAATAAATTTCTTA
CCATATGAATAAAAAGCACAAAATATCATCTTCTTTGGAGACTTTTTCTA
TCGaggtagactatgttatagtctaagacgaatcactatctaagaaaaaa
gctcaaagccgaagaaaattcacaaacgagtttttttgccgaaaagagtt
tacagtcggtcgAGTTGCCagttcttcgaaactctcccgccgattttttt
ccgtataccgccataacaccataccgccattttttcccgcctttactatc
actgtaacatATGATAACATCGTCTACTATCGAGGAGGCCCCTCCCCAGC
AGTATTCGTGATGGTGTGATTGGCGTTTTTCAAGTTCGTGATTTCgggat
ttaagattttaaagtgcgtGATTGCATGATCGGAAGACCAACGTgatcaa
cgtgatcgtgatagaaaggaaatttaattcgttaacgtgatttggaattt
tttttgtgtaatTTAAAAGGtgactgggggggcctcatcGAGAATACAAA
ACAGCAAagttatctgaaaaattttcattttttcactcAGGTGACTCACA
CGGGCGATACCAAAACGAAGATGGTTTTAAAATTTCCGATACTTTACTTA
CTGAAGCCATTCAACCAATAAATTTCGAAGTACCATCATCTGAAATCAAA
AACAGAAAAGCCAATTTAAAATGTCAAAGGGAGAATTGTATTCTTAATAC
AAATCATGGTTATTGGAGTGGAAAAAACTTCATTGATTTGGCAACAGGGC
GACCTGTAACCGAATTTGTGAGCAGAAAATTGAAGCGAAAGTTGAAATCC
TTTGCTGCATTCGGTGACTCGCTGACATATCGGTTCTATGGATTAATCAA
AGAAAAATGCTTGAAACTGTTCTATTTCTGTAATCCTGTCTATACTTGGT
CTtataaagttaagaaaaaagagctgaaaaacaaaatcatttatGATGGA
CTAGATTTCGACGAATCGCGTTTCTTGGGTGAAATCCATGCCGCAATGAA
AGGAAAAACTgtctttttgatcaattttggtCTCCACCATGTTTCAACAC
TGCCGATGGAACGTTGTTTTAGATTATTCCAACAATTTATTAAACTGGTT
AAGATAAAGCGCAAGAAAGGGATTGGTCCGTTGGTCATTTGGAAAACAAC
AACTCCACCCTTCTTGGAAAATAGGCAAGATAAAACAAAGAATGCAGATT
GGCATCACTATCGCACAAAACAGGTAAACATGTATACCgaacactccctt
ctcacagacccggtaggatttctccctccaatggggatgaaaataacgga
ctgaaacgcaatggggatcgatattcccatattttttatggctgggaatt
tcaattcttttgttttcaagtcagaaaattcagtggggatgggaaaaata
gcataatattttgcagtgagtattgtttttgtttattgttaccagtgggg
acaaaaattgaaggatgatttcccaccggagacgatattttggccaattt
ttccagtggatctgtgagaagaGTTTATCGTTCTTTACATTTGCAATTTT
AAACTTTACTAGGCTCACGTTTGACATAAAACATTATTTCGATCATCAGT
CGGTTGTGGAGATTTTGTAGAGAATGATATACAGTGTGCTATTAGAAATT
TGTGTGAATGAGAGTTAAAATTACAAACGAAGGTCTCAGTTTTGAAGAAG
GAGCGTAATACCCTTTTTTGCCCATTTTGACAAAAGACGTTATGtagttt
caaagaaaatttcgtTGTGGGAATTTCGCCtcggtaaaaaatattttact
ttttaaatcttttcttgttttttcatttcagaggATAGAAGTATGGAATA
GTTATACAATAGAAGAATGCTGCAAAGCTGGTATAGATGTGCTTGATGTC
TATGAAATGGCACTATCGTCACCAAAAAAGACATTAGATGGAGTTCATTA
CCCGAATACTGTATTTGAATCTGCTGAAAatgatttattg Coding sequence (CDS) from alignment at sc0000047:665071..668910+ >TCONS_00004644 ID=TCONS_00004644|Name=TCONS_00004644|organism=Clytia hemisphaerica|type=CDS|length=3618bp|location=Sequence derived from alignment at sc0000047:665071..668910+ (Clytia hemisphaerica)
AGAGATAAAGATATTTTGAAACCGTGTCAAAATCATTCAAATTATTCTGA
AGAGTCGAAAACATTAGCAAATTATAGCTTGGTAAAAGTTCACCCAATAA
AAAATGATGGTGCAAAGCCATTACGTATAGAAATCCAAACTTTTGACCTc
aataaaaatccgaaaacactCGGTGGTGATTATTGGCTTGGGTTTTTAGA
GATCAAAACTATGAAGTATGCACTCCGCTTCATAGACTATGGAAATGGAA
GATATATTGCATACTTTAGACCACATCTTGCTGGATCGTATACTTTGCAC
CTCACTTTAGAGCATAGTCTATGTGACGGATTACTAGATCCACCATCGAA
TTGGTTTCAATTAGGTGACTCACACGGGCGATACCAAAACGAAGATGGTT
TTAAAATTTCCGATACTTTACTTACTGAAGCCATTCAACCAATAAATTTC
GAAGTACCATCATCTGAAATCAAAAACAGAAAAGCCAATTTAAAATGTCA
AAGGGAGAATTGTATTCTTAATACAAATCATGGTTATTGGAGTGGAAAAA
ACTTCATTGATTTGGCAACAGGGCGACCTGTAACCGAATTTGTGAGCAGA
AAATTGAAGCGAAAGTTGAAATCCTTTGCTGCATTCGGTGACTCGCTGAC
ATATCGGTTCTATGGATTAATCAAAGAAAAATGCTTGAAACTGTTCTATT
TCTGTAATCCTGTCTATACTTGGTCTtataaagttaagaaaaaagagctg
aaaaacaaaatcatttatGATGGACTAGATTTCGACGAATCGCGTTTCTT
GGGTGAAATCCATGCCGCAATGAAAGGAAAAACTgtctttttgatcaatt
ttggtCTCCACCATGTTTCAACACTGCCGATGGAACGTTGTTTTAGATTA
TTCCAACAATTTATTAAACTGGTTAAGATAAAGCGCAAGAAAGGGATTGG
TCCGTTGGTCATTTGGAAAACAACAACTCCACCCTTCTTGGAAAATAGGC
AAGATAAAACAAAGAATGCAGATTGGCATCACTATCGCACAAAACAGagg
ATAGAAGTATGGAATAGTTATACAATAGAAGAATGCTGCAAAGCTGGTAT
AGATGTGCTTGATGTCTATGAAATGGCACTATCGTCACCAAAAAAGACAT
TAGATGGAGTTCATTACCCGAATACTGTATTTGAATCTGCTGAAAatgat
ttattgAGAGATAAAGATATTTTGAAACCGTGTCAAAATCATTCAAATTA
TTCTGAAGAGTCGAAAACATTAGCAAATTATAGCTTGGTAAAAGTTCACC
CAATAAAAAATGATGGTGCAAAGCCATTACGTATAGAAATCCAAACTTTT
GACCTcaataaaaatccgaaaacactCGGTGGTGATTATTGGCTTGGGTT
TTTAGAGATCAAAACTATGAAGTATGCACTCCGCTTCATAGACTATGGAA
ATGGAAGATATATTGCATACTTTAGACCACATCTTGCTGGATCGTATACT
TTGCACCTCACTTTAGAGCATAGTCTATGTGACGGATTACTAGATCCACC
ATCGAATTGGTTTCAATTAGGTGACTCACACGGGCGATACCAAAACGAAG
ATGGTTTTAAAATTTCCGATACTTTACTTACTGAAGCCATTCAACCAATA
AATTTCGAAGTACCATCATCTGAAATCAAAAACAGAAAAGCCAATTTAAA
ATGTCAAAGGGAGAATTGTATTCTTAATACAAATCATGGTTATTGGAGTG
GAAAAAACTTCATTGATTTGGCAACAGGGCGACCTGTAACCGAATTTGTG
AGCAGAAAATTGAAGCGAAAGTTGAAATCCTTTGCTGCATTCGGTGACTC
GCTGACATATCGGTTCTATGGATTAATCAAAGAAAAATGCTTGAAACTGT
TCTATTTCTGTAATCCTGTCTATACTTGGTCTtataaagttaagaaaaaa
gagctgaaaaacaaaatcatttatGATGGACTAGATTTCGACGAATCGCG
TTTCTTGGGTGAAATCCATGCCGCAATGAAAGGAAAAACTgtctttttga
tcaattttggtCTCCACCATGTTTCAACACTGCCGATGGAACGTTGTTTT
AGATTATTCCAACAATTTATTAAACTGGTTAAGATAAAGCGCAAGAAAGG
GATTGGTCCGTTGGTCATTTGGAAAACAACAACTCCACCCTTCTTGGAAA
ATAGGCAAGATAAAACAAAGAATGCAGATTGGCATCACTATCGCACAAAA
CAGaggATAGAAGTATGGAATAGTTATACAATAGAAGAATGCTGCAAAGC
TGGTATAGATGTGCTTGATGTCTATGAAATGGCACTATCGTCACCAAAAA
AGACATTAGATGGAGTTCATTACCCGAATACTGTATTTGAATCTGCTGAA
AatgatttattgAGAGATAAAGATATTTTGAAACCGTGTCAAAATCATTC
AAATTATTCTGAAGAGTCGAAAACATTAGCAAATTATAGCTTGGTAAAAG
TTCACCCAATAAAAAATGATGGTGCAAAGCCATTACGTATAGAAATCCAA
ACTTTTGACCTcaataaaaatccgaaaacactCGGTGGTGATTATTGGCT
TGGGTTTTTAGAGATCAAAACTATGAAGTATGCACTCCGCTTCATAGACT
ATGGAAATGGAAGATATATTGCATACTTTAGACCACATCTTGCTGGATCG
TATACTTTGCACCTCACTTTAGAGCATAGTCTATGTGACGGATTACTAGA
TCCACCATCGAATTGGTTTCAATTAGGTGACTCACACGGGCGATACCAAA
ACGAAGATGGTTTTAAAATTTCCGATACTTTACTTACTGAAGCCATTCAA
CCAATAAATTTCGAAGTACCATCATCTGAAATCAAAAACAGAAAAGCCAA
TTTAAAATGTCAAAGGGAGAATTGTATTCTTAATACAAATCATGGTTATT
GGAGTGGAAAAAACTTCATTGATTTGGCAACAGGGCGACCTGTAACCGAA
TTTGTGAGCAGAAAATTGAAGCGAAAGTTGAAATCCTTTGCTGCATTCGG
TGACTCGCTGACATATCGGTTCTATGGATTAATCAAAGAAAAATGCTTGA
AACTGTTCTATTTCTGTAATCCTGTCTATACTTGGTCTtataaagttaag
aaaaaagagctgaaaaacaaaatcatttatGATGGACTAGATTTCGACGA
ATCGCGTTTCTTGGGTGAAATCCATGCCGCAATGAAAGGAAAAACTgtct
ttttgatcaattttggtCTCCACCATGTTTCAACACTGCCGATGGAACGT
TGTTTTAGATTATTCCAACAATTTATTAAACTGGTTAAGATAAAGCGCAA
GAAAGGGATTGGTCCGTTGGTCATTTGGAAAACAACAACTCCACCCTTCT
TGGAAAATAGGCAAGATAAAACAAAGAATGCAGATTGGCATCACTATCGC
ACAAAACAGaggATAGAAGTATGGAATAGTTATACAATAGAAGAATGCTG
CAAAGCTGGTATAGATGTGCTTGATGTCTATGAAATGGCACTATCGTCAC
CAAAAAAGACATTAGATGGAGTTCATTACCCGAATACTGTATTTGAATCT
GCTGAAAatgatttattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004644-exon-sc0000047-1491911889:665071..665436 | TCONS_00004644-exon-sc0000047-1491911889:665071..665436 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1510915933:665071..665436 | TCONS_00004644-exon-sc0000047-1510915933:665071..665436 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1575043694:665071..665436 | TCONS_00004644-exon-sc0000047-1575043694:665071..665436 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1491911889:667461..668143 | TCONS_00004644-exon-sc0000047-1491911889:667461..668143 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1510915933:667461..668143 | TCONS_00004644-exon-sc0000047-1510915933:667461..668143 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1575043694:667461..668143 | TCONS_00004644-exon-sc0000047-1575043694:667461..668143 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1491911889:668752..668910 | TCONS_00004644-exon-sc0000047-1491911889:668752..668910 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1510915933:668752..668910 | TCONS_00004644-exon-sc0000047-1510915933:668752..668910 | Clytia hemisphaerica | exon |
| TCONS_00004644-exon-sc0000047-1575043694:668752..668910 | TCONS_00004644-exon-sc0000047-1575043694:668752..668910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:665071..668910 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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