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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004643 ID=TCONS_00004643|Name=TCONS_00004643|organism=Clytia hemisphaerica|type=transcript|length=728bp
TagcaaaacaatagaaaattaaataaagatgTTTGAGGCGTTTCAAATTT
CGAGTATAAAAGGATAGTCGGTGTGTGTAAAATCTTCAATCATCAAGATT
CGTacgaaactgaaaaaaacatCAACATGTTACGTTTCACATTTCTTTTC
GCTTGTCTTTTGGGAATTACCCTCGGAGGAGGTGGTCTTTTTCCAATGAC
AGAGGAAGAGATTGAAAAATGTATGCCTCTTCAAAACGGAATGGATATCG
CTGTCGAACAATTGAACATGAAGAATGATAGGAAAGAAAATGATTACAGA
TTGGTTAGAACCGAAACAATCAAAGCATCCAAGCAAGTCGTTACTGGAGT
GTTATACCGTGTACACGTCACCATGGAAGAAAGTGTTTGCCAAAACGTCG
AAGGAAACAAATACAAAGGATTGACTGACTGCCCAACCAAAGGGAATGGA
CAAAACAAAGATTGCGTCTTCACGATCTGGTCTCGACCGTGGATGAAGAA
ATTTGGTAAAGATTTATTGATCAAAGGAATCAACTGCAACTAAAATGTTT
CcttgatttatttttcaaaattactatCTAGTTTGTTGGCGATAAAGAAT
AAAACTATATTCATTCAGTTCAAATTCGTTTGTTTTATAATCATTTGAAA
GATGGGTACTTCTGTGCACTATCacacgattttttttataaaaatgatgc
aaatccatttcatcatggatattcttaa Run BLAST on NCBI protein sequence of TCONS_00004643-protein >TCONS_00004643-protein ID=TCONS_00004643-protein|Name=TCONS_00004643-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MLRFTFLFACLLGITLGGGGLFPMTEEEIEKCMPLQNGMDIAVEQLNMKN
DRKENDYRLVRTETIKASKQVVTGVLYRVHVTMEESVCQNVEGNKYKGLT
DCPTKGNGQNKDCVFTIWSRPWMKKFGKDLLIKGINCN Run BLAST on NCBI transcript from alignment at sc0000047:619629..622162+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004643 ID=TCONS_00004643|Name=TCONS_00004643|organism=Clytia hemisphaerica|type=transcript|length=2534bp|location=Sequence derived from alignment at sc0000047:619629..622162+ (Clytia hemisphaerica)
TagcaaaacaatagaaaattaaataaagatgTTTGAGGCGTTTCAAATTT
CGAGTATAAAAGGATAGTCGGTGTGTGTAAAATCTTCAATCATCAAGATT
CGTacgaaactgaaaaaaacatCAACATGTTACGTTTCACATTTCTTTTC
GCTTGTCTTTTGGGAATTACCCTCGGAGGAGGTGGTCTTTTTCCAATGAC
AGAGGAAGAGATTGAAAAATGTATGCCTCTTCAAAACGGAATGGATATCG
CTGTCGAACAATTGAACATGAAGAATGATAGGAAAGAAAATGATTACAGG
TTTGTTGTAACTTATAATATATATCTACacgggctctgaccatagtccaa
aaattgattttggtatttgaacataaaagttatatttcagcatggaggta
taaagaaacaggagaagtatgctattgtaaccatgctcgccctacgattg
aAAATATTACGAGGTAtacatgctcataatctcatatatcgtgcattttt
aatgagctcttttgttgataggtaaaatcttattggctaacttaagtgtt
ggattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgggcg
agcctagaatttcttttgatttattacataaaagaaatcaaaagacttta
acgaccaattaccgacaaattcatctcctgtctttctttaaaCCTCTATG
ATTttaggttccttaacacttttaacaaagaattgcatttataaattgca
ttttaattgaatcccttaagagtaattaagaatttaattgcaaaaatgac
gttatgaactttaaaaagatgttaataatatgttccATCACCCTCACtct
ctttttgtttcaaaatttctttacactgtccgcaaagaattgaactattt
taaattttgcggaaaatttttctaaaaagatgtgtcaaaagttgtgactg
tttttttaagcaaaatccagataaaaaattgatgaaaaatcactttgaag
atttcgagacaaagaagcatttacaaaaattttccgcaaaaaattttatc
gttcggtaaaagatacaccatctactgcgaaaattttttcaaaatgtttt
ttcttcgccaaaactaagctcttcaaagttgaaatactcttcctcacaag
tcttcattttcttcttcatcaaattttttcaatgcaatttttgaattttc
agatttaggaatagtttgtctaacagaaaatgtataacattccatagttt
tgttggttacatcagtcagaaaacacattttaaacacggcaattatgaaa
aattcactatggtcagagcccttaagtagaCAAGCATTGAACGGCCTTAA
AATTAACACGCAAGAAATTAACATGATTTTTTTCCTCTTCTCAAAGACAT
CAAGGATGATTTTTTAATGGAAGGAGCTCATATTTCCATTTCCATTGATT
ACCTACTTATATTCGTGTGATAGGGTAATTCCACCTTTTACCATATACAC
TAGCCAGTTTATTTTTCTGCGACGGAACGGTTTGGCGTTGTTTCGACCTT
TTCTAATGTTAAATGTCAGTTGCTCTTTATTCAAATTTCCCGTTCTCCAC
TCCAGATTGGTTAGAACCGAAACAATCAAAGCATCCAAGCAAGTCGTTAC
TGGAGTGTTATACCGTGTACACGTCACCATGGAAGAAAGTGTTTGCCAAA
ACGTCGAAGGAAACAAATACAAAGGATTGACTGACTGCCCAACCAAAGGG
AATGGACAAAACAAAGATTGCGTCTTCACGATCTGGTCTCGACCGTGGAT
GAAGAAATTTGGTAAAGATTTATTGATCAAAGGAATCAACTGCAACTAAA
ATGTTTCcttgatttatttttcaaaattactatCTAGTTTGTTGGCGATA
AAGAATAAAACTATATTCATTCAGTTCAAATTCGTTTGTTTTATAATCAT
TTGAAAGATGGGTACTTCTGTGCACTATCacacgattttttttataaaaa
tgatgcaaatccatttcatcatggatattcttaa Coding sequence (CDS) from alignment at sc0000047:619629..622162+ >TCONS_00004643 ID=TCONS_00004643|Name=TCONS_00004643|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0000047:619629..622162+ (Clytia hemisphaerica)
ATGTTACGTTTCACATTTCTTTTCGCTTGTCTTTTGGGAATTACCCTCGG
AGGAGGTGGTCTTTTTCCAATGACAGAGGAAGAGATTGAAAAATGTATGC
CTCTTCAAAACGGAATGGATATCGCTGTCGAACAATTGAACATGAAGAAT
GATAGGAAAGAAAATGATTACAGATTGGTTAGAACCGAAACAATCAAAGC
ATCCAAGCAAGTCGTTACTGGAGTGTTATACCGTGTACACGTCACCATGG
AAGAAAGTGTTTGCCAAAACGTCGAAGGAAACAAATACAAAGGATTGACT
GACTGCCCAACCAAAGGGAATGGACAAAACAAAGATTGCGTCTTCACGAT
CTGGTCTCGACCGTGGATGAAGAAATTTGGTAAAGATTTATTGATCAAAG
GAATCAACTGCAACTAAATGTTACGTTTCACATTTCTTTTCGCTTGTCTT
TTGGGAATTACCCTCGGAGGAGGTGGTCTTTTTCCAATGACAGAGGAAGA
GATTGAAAAATGTATGCCTCTTCAAAACGGAATGGATATCGCTGTCGAAC
AATTGAACATGAAGAATGATAGGAAAGAAAATGATTACAGATTGGTTAGA
ACCGAAACAATCAAAGCATCCAAGCAAGTCGTTACTGGAGTGTTATACCG
TGTACACGTCACCATGGAAGAAAGTGTTTGCCAAAACGTCGAAGGAAACA
AATACAAAGGATTGACTGACTGCCCAACCAAAGGGAATGGACAAAACAAA
GATTGCGTCTTCACGATCTGGTCTCGACCGTGGATGAAGAAATTTGGTAA
AGATTTATTGATCAAAGGAATCAACTGCAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004643-exon-sc0000047-1491911889:619629..619927 | TCONS_00004643-exon-sc0000047-1491911889:619629..619927 | Clytia hemisphaerica | exon |
| TCONS_00004643-exon-sc0000047-1510915933:619629..619927 | TCONS_00004643-exon-sc0000047-1510915933:619629..619927 | Clytia hemisphaerica | exon |
| TCONS_00004643-exon-sc0000047-1575043694:619629..619927 | TCONS_00004643-exon-sc0000047-1575043694:619629..619927 | Clytia hemisphaerica | exon |
| TCONS_00004643-exon-sc0000047-1491911889:621734..622162 | TCONS_00004643-exon-sc0000047-1491911889:621734..622162 | Clytia hemisphaerica | exon |
| TCONS_00004643-exon-sc0000047-1510915933:621734..622162 | TCONS_00004643-exon-sc0000047-1510915933:621734..622162 | Clytia hemisphaerica | exon |
| TCONS_00004643-exon-sc0000047-1575043694:621734..622162 | TCONS_00004643-exon-sc0000047-1575043694:621734..622162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:619629..622162 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000010 | Cystatin_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004869 | cysteine-type endopeptidase inhibitor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004869 |
cysteine-type endopeptidase inhibitor activity |
Blast
The following BLAST results are available for this feature:
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