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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004635 ID=TCONS_00004635|Name=TCONS_00004635|organism=Clytia hemisphaerica|type=transcript|length=2078bp
TCCAACCTTGCCATTTCCAGGAATTTGCTCTATGATTGATCAAAGCTCAA
ATTCATCATTAACAATTCTTTTATCTTGTCTTTAGAAATAACATCacaga
agaaacaaaaatattctataGTTATTGTTGACTGAATCTTACGATGAAGA
TTTAGACAACAATATAAGCCGATGCTTATCGGAGAATGAGATGAAATGGA
GAAAGCGAGTCGTTCTTACAAACAGCCGAAGATGAAACAAAAGGAATACT
TCGAAGTGTTACAACGTCGCCAACAAAATGGTTACTATGGTGACAACCCG
CAATCTTTGCACCAATTGAAAATGCAACGCGGTGCTATGGTTCAACGTTC
ATACAGTGATGCTATGTTCAAACAAAATAAGCACAAGACCGCCTCTAAAC
AACCTAAAACTGTGACTGTCTCGCGAAATAATAGTAATGTGAGCGTAAGT
AGCCGNCAACAAAATGGTTACTATGGTGACAACCCGCAATCTTTACACCA
ATTGAAAATGCAACGCGGTGCTATGGTTCAACGTTCATACAGTGATGCTA
TGTTCAAACAAAATAAGCACAAGACCGCCTCTAAACAACCTAAAACTGTG
ACTGTCTCGCGAAATAATAGTAATGTGAGCGTAAGTAGCCGTGGTAGTCG
AACTAGTAGTCATTACTCTGGACAGTACCCTGCATATCCTGCTGGAGTCC
AAAGGTCATATAGTGACGGTATTCGATTGGTTGATTATAGAGAGCGCGGg
aaaaataacaataacaacATTCAACAAAATGGTGCCGTTCGAACCAATCA
TAATAGACCGAGTTCTGTTGATTTATCTCGATCACAATCTTCAGTAGTGC
GGTCCCAAAAGTACGCGCGGCCCGCTTCGGTAGATTTAGATAATAGACGG
CCACGATCTATTTTAAAGAAATCATCATCTTTTAACGACTTGAATAATAA
TCATTCTGCTGAACAAGACTTGATTTTTGATGATGTGTATTTAGATTACG
TCAGCCCACGCGATCTATTAAGTACGTCTGACCACGGTGGAAGTTATCAT
AATTTGAATTACTCTTTTGAGGGCGAGTTACGGAACGACCCGCGACAGAT
GAGAGCTATGTCTCCTAAAATGACCAAACGTGTTAATTTTAATAACGAAC
CAATCTATTATAAGACAACGAAATCGAATGATAGTAAATCACCTGCTCAA
AGAGTTCTTCCTCAAGGGCACCCGCTTCGGAGATTCAATTCGACGTCTTT
GATGGAAGAGCGCATTTTGCAGCAGCAAAGGTTACGTAATCAACAAAGAA
ATCAACCTGCTATTAACGGACATGCTAACGGTGGTGCAGTGTACGCCAAC
GGAGGTGAAACATCTCCTGTCAAAAAACAGAACGCTTCACCGCGCAGTGA
TACTCGAAAGGAGCAACAACCATTTGAAATCAGGAAACCTTTAGTAGGTG
GCGAAAATAATGTTGTTGATTTTGGAACATATATTTCTAAGAAATTATCG
AAATTAAAATTCGGGGGTAAAAAGAAGgacaagaaaaatcaatcaTCACC
TACCAAAGAAAGTATAAGGACAACACACGATGATAATTTTACCATGTTAT
CAGGACGGAATGGAAGCCCTTCTagtgataattttatggatcaggaagtc
ttgtactaatataacttgaaaaacataattttattTGGCTAAGAGCTCTT
GCTGGTGGGGCCAAGATAATTTTCGTCAAGTGACAcatgtgtttttgagt
tttaaccttttttttcaatcttgAACTAAATTGTATTTTAAACTTTGCTT
TGCTTGTGCTGACTGCGGGTTAAAGTTTCTAAATAAAGTTCTCTGGCTGT
TATTTCATTCTCAAATtatgattttacatttttttttcaaggttaGAAAT
GAGACCTACTCCACACACGTCGTTTGCCAAAGGATAATTTACAAACAAGT
TCAGTTTTCCCAGTTTAAATTTTGACAGCAAATTTACTAtaatttttaga
cattttgaacaatatatatttaaCACAGACATTTTTTCCATTCAcgcgaa
ttatttttaaacTCCATTTCatttatag Run BLAST on NCBI protein sequence of TCONS_00004635-protein >TCONS_00004635-protein ID=TCONS_00004635-protein|Name=TCONS_00004635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MEKASRSYKQPKMKQKEYFEVLQRRQQNGYYGDNPQSLHQLKMQRGAMVQ
RSYSDAMFKQNKHKTASKQPKTVTVSRNNSNVSVSSXQQNGYYGDNPQSL
HQLKMQRGAMVQRSYSDAMFKQNKHKTASKQPKTVTVSRNNSNVSVSSRG
SRTSSHYSGQYPAYPAGVQRSYSDGIRLVDYRERGKNNNNNIQQNGAVRT
NHNRPSSVDLSRSQSSVVRSQKYARPASVDLDNRRPRSILKKSSSFNDLN
NNHSAEQDLIFDDVYLDYVSPRDLLSTSDHGGSYHNLNYSFEGELRNDPR
QMRAMSPKMTKRVNFNNEPIYYKTTKSNDSKSPAQRVLPQGHPLRRFNST
SLMEERILQQQRLRNQQRNQPAINGHANGGAVYANGGETSPVKKQNASPR
SDTRKEQQPFEIRKPLVGGENNVVDFGTYISKKLSKLKFGGKKKDKKNQS
SPTKESIRTTHDDNFTMLSGRNGSPSSDNFMDQEVLY Run BLAST on NCBI transcript from alignment at sc0000047:467472..469603+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004635 ID=TCONS_00004635|Name=TCONS_00004635|organism=Clytia hemisphaerica|type=transcript|length=2132bp|location=Sequence derived from alignment at sc0000047:467472..469603+ (Clytia hemisphaerica)
TCCAACCTTGCCATTTCCAGGAATTTGCTCTATGATTGATCAAAGCTCAA
ATTCATCATTAACAATTCTTTTATCTTGTCTTTAGAAATAACATCacaga
agaaacaaaaatattctataGTTATTGTTGACTGAATCTTACGATGAAGA
TTTAGACAACAATATAAGCCGATGCTTATCGGAGAATGAGATGAAATGGA
GAAAGCGAGTCGTTCTTACAAACAGCCGAAGATGAAACAAAAGGAATACT
TCGAAGTGTTACAACGTCGCCAACAAAATGGTTACTATGGTGACAACCCG
CAATCTTTGCACCAATTGAAAATGCAACGCGGTGCTATGGTTCAACGTTC
ATACAGTGATGCTATGTTCAAACAAAATAAGCACAAGACCGCCTCTAAAC
AACCTAAAACTGTGACTGTCTCGCGAAATAATAGTAATGTGAGCGTAAGT
AGCCGNCAACAAAATGGTTACTATGGTGACAACCCGCAATCTTTACACCA
ATTGAAAATGCAACGCGGTGCTATGGTTCAACGTTCATACAGTGATGCTA
TGTTCAAACAAAATAAGCACAAGACCGCCTCTAAACAACCTAAAACTGTG
ACTGTCTCGCGAAATAATAGTAATGTGAGCGTAAGTAGCCGTGGTAGTCG
AACTAGTAGTCATTACTCTGGACAGTACCCTGCATATCCTGCTGGAGTCC
AAAGGTCATATAGTGACGGTATTCGATTGGTTGATTATAGAGAGCGCGGg
aaaaataacaataacaacATTCAACAAAATGGTGCCGTTCGAACCAATCA
TAATAGACCGAGTTCTGTTGATTTATCTCGATCACAATCTTCAGTAGTGC
GGTCCCAAAAGTACGCGCGGCCCGCTTCGGTAGATTTAGATAATAGACGG
CCACGATCTATTTTAAAGAAATCATCATCTTTTAACGACTTGAATAATAA
TCATTCTGCTGAACAAGACTTGATTTTTGATGATGTGTATTTAGATTACG
TCAGCCCACGCGATCTATTAAGTACGTCTGACCACGGTGGAAGTTATCAT
AATTTGAATTACTCTTTTGAGGGCGAGTTACGGAACGACCCGCGACAGAT
GAGAGCTATGTCTCCTAAAATGACCAAACGTGTTAATTTTAATAACGAAC
CAATCTATTATAAGACAACGAAATCGAATGATAGTAAATCACCTGCTCAA
AGAGTTCTTCCTCAAGGGCACCCGCTTCGGAGATTCAATTCGACGTCTTT
GATGGAAGAGCGCATTTTGCAGCAGCAAAGGTTACGTAATCAACAAAGAA
ATCAACCTGCTATTAACGGACATGCTAACGGTGGTGCAGTGTACGCCAAC
GGAGGTGAAACATCTCCTGTCAAAAAACAGAACGCTTCACCGCGCAGTGA
TACTCGAAAGGAGCAACAACCATTTGAAATCAGGAAACCTTTAGTAGGCG
GCGAGNCTCGAAAGGTGCAACAACCATTTGAAATCAGGAAACCTTTAGTA
GGTGGCGAAAATAATGTTGTTGATTTTGGAACATATATTTCTAAGAAATT
ATCGAAATTAAAATTCGGGGGTAAAAAGAAGgacaagaaaaatcaatcaT
CACCTACCAAAGAAAGTATAAGGACAACACACGATGATAATTTTACCATG
TTATCAGGACGGAATGGAAGCCCTTCTagtgataattttatggatcagga
agtcttgtactaatataacttgaaaaacataattttattTGGCTAAGAGC
TCTTGCTGGTGGGGCCAAGATAATTTTCGTCAAGTGACAcatgtgttttt
gagttttaaccttttttttcaatcttgAACTAAATTGTATTTTAAACTTT
GCTTTGCTTGTGCTGACTGCGGGTTAAAGTTTCTAAATAAAGTTCTCTGG
CTGTTATTTCATTCTCAAATtatgattttacatttttttttcaaggttaG
AAATGAGACCTACTCCACACACGTCGTTTGCCAAAGGATAATTTACAAAC
AAGTTCAGTTTTCCCAGTTTAAATTTTGACAGCAAATTTACTAtaatttt
tagacattttgaacaatatatatttaaCACAGACATTTTTTCCATTCAcg
cgaattatttttaaacTCCATTTCatttatag Coding sequence (CDS) from alignment at sc0000047:467472..469603+ >TCONS_00004635 ID=TCONS_00004635|Name=TCONS_00004635|organism=Clytia hemisphaerica|type=CDS|length=2928bp|location=Sequence derived from alignment at sc0000047:467472..469603+ (Clytia hemisphaerica)
ATGGAGAAAGCGAGTCGTTCTTACAAACAGCCGAAGATGAAACAAAAGGA
ATACTTCGAAGTGTTACAACGTCGCCAACAAAATGGTTACTATGGTGACA
ACCCGCAATCTTTGCACCAATTGAAAATGCAACGCGGTGCTATGGTTCAA
CGTTCATACAGTGATGCTATGTTCAAACAAAATAAGCACAAGACCGCCTC
TAAACAACCTAAAACTGTGACTGTCTCGCGAAATAATAGTAATGTGAGCG
TAAGTAGCCGNCAACAAAATGGTTACTATGGTGACAACCCGCAATCTTTA
CACCAATTGAAAATGCAACGCGGTGCTATGGTTCAACGTTCATACAGTGA
TGCTATGTTCAAACAAAATAAGCACAAGACCGCCTCTAAACAACCTAAAA
CTGTGACTGTCTCGCGAAATAATAGTAATGTGAGCGTAAGTAGCCGTGGT
AGTCGAACTAGTAGTCATTACTCTGGACAGTACCCTGCATATCCTGCTGG
AGTCCAAAGGTCATATAGTGACGGTATTCGATTGGTTGATTATAGAGAGC
GCGGgaaaaataacaataacaacATTCAACAAAATGGTGCCGTTCGAACC
AATCATAATAGACCGAGTTCTGTTGATTTATCTCGATCACAATCTTCAGT
AGTGCGGTCCCAAAAGTACGCGCGGCCCGCTTCGGTAGATTTAGATAATA
GACGGCCACGATCTATTTTAAAGAAATCATCATCTTTTAACGACTTGAAT
AATAATCATTCTGCTGAACAAGACTTGATTTTTGATGATGTGTATTTAGA
TTACGTCAGCCCACGCGATCTATTAAGTACGTCTGACCACGGTGGAAGTT
ATCATAATTTGAATTACTCTTTTGAGGGCGAGTTACGGAACGACCCGCGA
CAGATGAGAGCTATGTCTCCTAAAATGACCAAACGTGTTAATTTTAATAA
CGAACCAATCTATTATAAGACAACGAAATCGAATGATAGTAAATCACCTG
CTCAAAGAGTTCTTCCTCAAGGGCACCCGCTTCGGAGATTCAATTCGACG
TCTTTGATGGAAGAGCGCATTTTGCAGCAGCAAAGGTTACGTAATCAACA
AAGAAATCAACCTGCTATTAACGGACATGCTAACGGTGGTGCAGTGTACG
CCAACGGAGGTGAAACATCTCCTGTCAAAAAACAGAACGCTTCACCGCGC
AGTGATACTCGAAAGGAGCAACAACCATTTGAAATCAGGAAACCTTTAGT
AGGTGGCGAAAATAATGTTGTTGATTTTGGAACATATATTTCTAAGAAAT
TATCGAAATTAAAATTCGGGGGTAAAAAGAAGgacaagaaaaatcaatca
TCACCTACCAAAGAAAGTATAAGGACAACACACGATGATAATTTTACCAT
GTTATCAGGACGGAATGGAAGCCCTTCTagtgataattttatggatcagg
aagtcttgtactaaATGGAGAAAGCGAGTCGTTCTTACAAACAGCCGAAG
ATGAAACAAAAGGAATACTTCGAAGTGTTACAACGTCGCCAACAAAATGG
TTACTATGGTGACAACCCGCAATCTTTGCACCAATTGAAAATGCAACGCG
GTGCTATGGTTCAACGTTCATACAGTGATGCTATGTTCAAACAAAATAAG
CACAAGACCGCCTCTAAACAACCTAAAACTGTGACTGTCTCGCGAAATAA
TAGTAATGTGAGCGTAAGTAGCCGNCAACAAAATGGTTACTATGGTGACA
ACCCGCAATCTTTACACCAATTGAAAATGCAACGCGGTGCTATGGTTCAA
CGTTCATACAGTGATGCTATGTTCAAACAAAATAAGCACAAGACCGCCTC
TAAACAACCTAAAACTGTGACTGTCTCGCGAAATAATAGTAATGTGAGCG
TAAGTAGCCGTGGTAGTCGAACTAGTAGTCATTACTCTGGACAGTACCCT
GCATATCCTGCTGGAGTCCAAAGGTCATATAGTGACGGTATTCGATTGGT
TGATTATAGAGAGCGCGGgaaaaataacaataacaacATTCAACAAAATG
GTGCCGTTCGAACCAATCATAATAGACCGAGTTCTGTTGATTTATCTCGA
TCACAATCTTCAGTAGTGCGGTCCCAAAAGTACGCGCGGCCCGCTTCGGT
AGATTTAGATAATAGACGGCCACGATCTATTTTAAAGAAATCATCATCTT
TTAACGACTTGAATAATAATCATTCTGCTGAACAAGACTTGATTTTTGAT
GATGTGTATTTAGATTACGTCAGCCCACGCGATCTATTAAGTACGTCTGA
CCACGGTGGAAGTTATCATAATTTGAATTACTCTTTTGAGGGCGAGTTAC
GGAACGACCCGCGACAGATGAGAGCTATGTCTCCTAAAATGACCAAACGT
GTTAATTTTAATAACGAACCAATCTATTATAAGACAACGAAATCGAATGA
TAGTAAATCACCTGCTCAAAGAGTTCTTCCTCAAGGGCACCCGCTTCGGA
GATTCAATTCGACGTCTTTGATGGAAGAGCGCATTTTGCAGCAGCAAAGG
TTACGTAATCAACAAAGAAATCAACCTGCTATTAACGGACATGCTAACGG
TGGTGCAGTGTACGCCAACGGAGGTGAAACATCTCCTGTCAAAAAACAGA
ACGCTTCACCGCGCAGTGATACTCGAAAGGAGCAACAACCATTTGAAATC
AGGAAACCTTTAGTAGGTGGCGAAAATAATGTTGTTGATTTTGGAACATA
TATTTCTAAGAAATTATCGAAATTAAAATTCGGGGGTAAAAAGAAGgaca
agaaaaatcaatcaTCACCTACCAAAGAAAGTATAAGGACAACACACGAT
GATAATTTTACCATGTTATCAGGACGGAATGGAAGCCCTTCTagtgataa
ttttatggatcaggaagtcttgtactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004635-exon-sc0000047-1491911889:467472..468918 | TCONS_00004635-exon-sc0000047-1491911889:467472..468918 | Clytia hemisphaerica | exon |
| TCONS_00004635-exon-sc0000047-1510915933:467472..468918 | TCONS_00004635-exon-sc0000047-1510915933:467472..468918 | Clytia hemisphaerica | exon |
| TCONS_00004635-exon-sc0000047-1575043694:467472..468918 | TCONS_00004635-exon-sc0000047-1575043694:467472..468918 | Clytia hemisphaerica | exon |
| TCONS_00004635-exon-sc0000047-1491911889:468973..469603 | TCONS_00004635-exon-sc0000047-1491911889:468973..469603 | Clytia hemisphaerica | exon |
| TCONS_00004635-exon-sc0000047-1510915933:468973..469603 | TCONS_00004635-exon-sc0000047-1510915933:468973..469603 | Clytia hemisphaerica | exon |
| TCONS_00004635-exon-sc0000047-1575043694:468973..469603 | TCONS_00004635-exon-sc0000047-1575043694:468973..469603 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:467472..469603 + |
Blast
The following BLAST results are available for this feature:
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