TCONS_00004633 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004633
Unique Name	TCONS_00004633
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1569

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000047:401432..407979+

transcript sequence

>TCONS_00004633 ID=TCONS_00004633|Name=TCONS_00004633|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CTTGCTCGTTCTACatcacaaacaaacaaagattatGTCACCTGTAGTTT
AGTGGCTTAGtttgattttaagatttcgtAGATTGATTTACTTGGTCATC
AAGTTCTCCGAAATTTCCATTTTGTGGTTGTATAATATTCttggtttcat
tttttgttattCAAGATGTCTACTGCGGGGCCACAAAGAAGAAGATCTAG
CGTTGGGATAGCTATGGATTCATTGAAAATCGCTGCTAATAAAGTCAAGA
AAAGCCCTAAAGCTTTGAAATGTAAAATTGATAATGCTCTCAACAAGGAT
AAATTGACAGACAACTGGATTCACAACcgtgaaaatgttcaaaatggcGT
CGTTTTTAATATGAAGGTGTTGGGCAAAAAAGTGGCGACAACGGCACAAG
GGAAAGGATGTACAGATGACGCAGTCAAAGAAATGGTCCAACAACATAAA
GTGAAAGGCAAAACGGAGAAACTATTGAAAGTTTCAATGAGGGTGGATAG
CAAGAAAATGATAATTCGAGATCTTGTTACACACGAATTACTCGAAGATG
TTCCAGTCAATAGAATCTCCTATTGTACAGCTGATCCGAATTTCCCAAAA
GTCTTTGCGTTGATTGCACGAGAACGAGGTTCCAAAACACTTTTCACGCA
TGCCTTCTTAACGAACAAGAAAGAAATGGCTGAAGCAATCGCATTAACAG
TGGCTCAAGCGTTCACAATGGCTTACGAGGAATGGGATGAAAAATCGAAA
GAAAGACAACGCGAAGTTGAAGATGAACAAGCATCTGATGCGCTAGAATT
ATATAAAGATCTAGCGTCGGAATCACCGAAACCCGATTCTAATCCATTCA
AGAAGGAAGACCAAGAAGatgatttcaatttcatttcaagttCACTGGCA
CCAAGAGTTCAAACCATCGAGATAGTGGAACCATTGGATAACGAAACACA
TTCAGATGGTGCTTCATCGGACGATGATGAATTCTCAAGGTCAGTAACAG
CAAAAGAAACCTTCCTCTTTTCGCACCGGACACATTTGCGCCCGGTCTCA
AGAGTTCCCGTAATGTAACACCGGACAGTTGTTTCTGTCGTAACTTGATA
ATACTTTTTGGCACAGGACAGTCCGGAGCGTCGACAGGGTCATTTGGGTC
AAATAAGGATTTTAATTACAGAGTGATCGACTTCAATTTAACAGTGAAAT
ACTAATTTATACGTCCGTAAATTTAAACAGACCTGATATCtacggaaatt
tcaaaattcattgccgtactaGGCTACAAGTTATACGGTAAATAGACTTT
GGTACTAAATTGTTGGAGTGTCTTGAGACTCGAACTAATTTTTGAATCGC
TAGTGAACATAGATATAACCGTGCCAGAAATTCATTTAGAAGTACAAAGT
GCATAGCTGTGACTTTGAGACGATGGTGTCTTTCCtatacttaaccaatt
ttgtgaaaaagcaACTCCAAGAATTGTTCTATTCCATTCGTATATTATAA
ACTttgtacagtatgtggcccccaaaacggcgatcaaatttgaaatttct
ctcaaatctagaggaaaag

Run BLAST on NCBI

transcript from alignment at sc0000047:401432..407979+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004633 ID=TCONS_00004633|Name=TCONS_00004633|organism=Clytia hemisphaerica|type=transcript|length=6548bp|location=Sequence derived from alignment at sc0000047:401432..407979+ (Clytia hemisphaerica)
CTTGCTCGTTCTACatcacaaacaaacaaagattatGTCACCTGTAGTTT
AGTGGCTTAGtttgattttaagatttcgtAGATTGATTTACTTGGTCATC
AAGTTCTCCGAAATTTCCATTTTGTGGTTGTATAATATTCttggtttcat
tttttgttattCAAGATGTCTACTGCGGTatgtttttgtttgctttttat
tttttgctgccTTATATAAGAGGACCCCCAAgaggttttcgtgatggcgt
gataggGCTTTTTTcctagcgtgattacgtgatttggaattttatttttc
gtgattgcgtgatcaaaGGTCAAAATATGATCgtgatttaaaagattttt
gagccgtgatgcgtgatttggactttttcaaagagaTGCGtgattatcaa
atttttttgctgatttccgtgatcgtgattgaagtcaaaaaattgcgtga
tatcgtgatcagagttaccgctgaGGGGAGGGGGCTCATAAAAATGTGCT
GTTTTAACCTTTGTGTGTGCAGTCTGACCTTTGTCGGCTGTCATTTGTCG
GCTGTATGTTTCTTGAGGAGCTTATCTTTTGGTATGTTGATTAAAAATCC
AGGTAAATCATAAAGATTGTTTTGGGCTGTACCCGATTAACAagcatttg
taaaattttttagTTGTTTAATTAATCTCTGATTACTCTTTCATCGACTG
TTTTACTTgctattattatttttcttcgtGCGAAAGTTTTGTCTGGTGTC
CTCGTTAGACTTTTcgttcttaaaaaatatttcacataTCAAAGCAGCTT
TTTTTTCCATAGATACATACAAAAATGTTGAATGAAGAACAGAACTTTGA
GGCGTTTCAAGTATTTCACTGAACAAAATTAAACTTCCCAGAACAGGCTA
GTTCAGTAGCGACCCagcaatgtcaattgaatatcGTTCTTTATTCTATT
GACTATGGAGCCAGTGCTGGCTTTATCTTAGGTTTCCTCCTTTAATGCTA
ATCAATCTAATCGAAATTCTGTGAAAAGTCTTTGAATCCGTGGAtaacat
ttttgagatttaatcAAATTAGAATCGATCTCAATCGCTAAAAGTCTGTA
GATTTTTATCAATAACATCATTTCCATTCTTTTGCTAATGACTGTTGCAc
ccgtttttttataagaacatcccaaacttttgaagcctgctgattttctt
aactttctgagttcaaagcctaaaaattttcttaacatgttctagactgg
cacgccagtcgggctggaacggtatcacgcgggaaaagtgagcgtaggag
ttaggtaagcgtaggaagaaattttgtcggcggcgagGGNNNNNNNNNNN
NNNNNNNNNNNNNgttaatcagcagcctctcaccaacttttgctcgctct
cctacgcagctcctattctagcaaacgcccgccacctttatgttcccgcc
ctctgacatgataaATTAACAGACTAGTATGCTAGtctaaacatgttctt
aatttcacaattttgtgagtattttgtgCAATCTTCTATGAAATTGGTTG
TTTTAGATTCTGCAAAGAAAAGTTTGTTTTcctatataatttgttcttaa
aaaaatgtgtacttaTAAAGAGACTGATTGCATTTAAATAATCAAACAGT
ACTATTTTAGTCCAGCCTTTGGTGTTCGTGTTCTGTACTTGTGTATTAAA
CTGGGTTAAATCTCAAGAAATTTTCACCTTATTCGGGTAGGAACACTATA
GCTGGTACTGACAAGTCTTACAAATAttgatatttgaaatttttgacctA
ACACTTTATGAAACCAAAAgtttttagattatttttgaaatgtttttaac
caaaaatagTATTTCGTGCATATTACTTTCGGCAAATGCACAATTTTACA
CAGATCTTTCTTTCTGTATCGTTTCAGGGGCCACAAAGAAGAAGATCTAG
CGTTGGGATAGCTATGGATTCATTGAAAATCGCTGCTAATAAAGTCAAGA
AAAGCCCTAAAGCTTTGAAATGTAAAATTGATAATGCTCTCAACAAGGAT
AGTAAGTgatcctttgtattttttttggtctttttcctgtcaagaaaaat
ttcctgaaatttcaaatttgtgttcctcgtgcgttttcgagttatgaaga
ccaCACTGTAAAAATCTTCTTGTTTTATCACCGCTAGTCAGAAGATTCTC
ACTGCTACCGGGTCGTTGAGACAGGGTTGTTAGAGAATCTCCATTCGTTG
GTTTTCAGTAGCAGACTATATTCAGGTCTGTTTCATTTCTTAGTACAGTG
GTTGAATAACTATCGGATATCGAACATTGTCGGgtcaaaaatcataaatt
tcaagCAAAAGCAACCTTGTCCGGTCATTTTGACCGccccacttgaaatc
gttatcTTCAGCCAAGGTAGAGGTACCTTCGAATTTCTTCTAGCTGTTCG
CAACATTCTTAACAAGTCTCGGTATTATCTTAACCTAATCATCATTATTG
TTTTTCAGAATTGACAGACAACTGGATTCACAACcgtgaaaatgttcaaa
atggcGTCGTTTTTAATATGAAGGTATTTATGGAATTCTTtgttttcgat
ttttctttaATTCTTATATCAGTTACATTATATGAAAAGGAAATCTTTGT
GAAAGTATCACTATAGTAGTGAAATGTTTTCGGAAAGCAATTGGAAATCT
CTTTTCAATTCTGATTTCATTTCTTTCGAATCTGTTTTTCCTCTTACTCC
GAATGACATATAATAAATTCCAATATGATTTACTCCAAGGTCATATATAA
TAATTTAAAGCCAGGCCAATGCTATGCTATGCCTAACCTAGCCAGGTATA
CATCAATGATTTCCCACTGAACTGTTAGCGCAAGCTAGAATTAgaactag
agtctacttctgactaGAATTTGCTTTCAGATGATTTTTAATTGAGTCCA
GAGATCCACCAATAAgtgccatccagtctatcataAAATCATAAGTGGCC
ATCAAGCTAGCTATACCCTAGCCTCATAGGTGAAATAATTTCCAAAGAAA
TAGGCATTTTTTCTCCACCCATAGGTGTTGGGCAAAAAAGTGGCGACAAC
GGCACAAGGGAAAGGATGTACAGATGACGCAGTCAAAGAAATGGTCCAAC
AACATAAAGTGGTAAGAATTGTGTAGCTGTGGTGTTCTTCAGTGGGCGGT
GATGTGATAGGGCGGAGAAGGTTATTTATAATAAGATGGGTGGATGTCTA
aacttttgacgtcaaaaatgttttgaaacgaATGTTCTGAACACAATGAG
CGTACAATAGACGATGTGGACAACAGATCCTTTTCATTTACCACCTGACT
TCTGTCGCCCAGTTTTCTTTGGGTTAtcctttttttataatttttttttt
agaccCCATATATTATGATATTGCTAAATGTTTTGAAGCTTAGTCAACAG
AGTAAAAAAAGCATATTTTCCACATACCAGACTTACAGTATAATTTGGTA
TCGCGATAATGAAAGAcgataagaaaaaaaacttcatttccttaaaagga
aaaattaagTTCAGTCACATGTTGTTATTTCAAAGGAAGGAAAAACTTAA
TGAGCATCTAATGACTGATAATTGGGAAAGAGCATTTTCATCCTGATGCA
TCATGCGAAGGGAGGGAAATGCGTCATTTAAATATACAGTATCCTTTTTA
CATTAATTTCGGTGCCTCATCTCTGTTTTCGTTCCTTCATACAACAGCTT
GTTAATTAGTCattaaaatgactagtaattaATCAATCCCTCTATAAATG
GGTTCTCATAACAGATGTTAATTAGTTTTTTATATGTATCGAACTTCCTC
TTACAAGTATTTGAAGTGCGCAGAAGGAATACCCAAAAAAATCcgtaaaa
caaaaataaaaaaaactgtcaCTTTTATATGAAGGTACAATAGTCAATTA
CTGTCCCTGAACCCAGATTCTCTTTTGagatttaaatatttctttttttt
tcttacagAAAGGCAAAACGGAGAAACTATTGAAAGTTTCAATGAGGGTG
GATAGCAAGAAAATGATAATTCGAGATCTTGTTACACACGtatgtttctt
cttttcatttcatttcattaaaatattttgattttttttaaaccccCGGT
TTGCTTTTACGTATTGTGGTCTGATCTGATAAACATTGTCATAGTCGTCG
TCTCGTCGTGAACCAAAAAATGGTCTTGATTCATCACTGTCAGGGGAGAT
AAAATCAGCTAACAGGCTTTTGTTACCACTCTGCACAAATTGATGGAAGG
TAATTTTAGTCAGGGAAAGTTTTAGTCacattttagtcatttttcccGAT
ACACAAATTCCTACCGATTGTATTCTTACCACGTCCAGCCCTTTAATGGG
AGTTATTATTGCTTTATTTTAATATGTTATTGTTTTTTGTAGGAATTACT
CGAAGATGTTCCAGTCAATAGAATCTCCTATTGTACAGCTGATCCGAATT
TCCCAAAAGTCTTTGCGTTGATTGCACGAGAACGAGGTTCCAAAACACTT
TTCACGCATGCCTTCTTAACGAACAAGAAAGAAATGGTAAGTAAATTAGC
CGAACTTAAGTTTCATCATCTCTAATTTCAGACAAAGATCTTATCACTAC
TTCCATTAGCTTgcatacagtcaactctctctaattcgaatttctattat
tcgaatctctctctaattcgaactataCTGTTTGTGCCCTCAGTTAAGAA
Atagtataaaatactttttctaattcgaagaaaattcctggtcccttgaa
gatcgaattagaggaGGTAACTGTATTATAGGCTTGTAAACAAAGCCTCT
TGTAGCACTGTTTGTAATATATAACAAACAATAACGGAAAGGGCAAACAT
GAACGTATAGATAGGTGCTTCGAGAAAAATGACGACAGTGTTGTTTCCGA
ATGCAGTTGGTGAAGACGCGTGTTGGCCTGGGAATCTGAGATGACAAATC
TAGGTTACAAAAGTAGATCTACTGCTCCATCAATCTAGAGAAAACAGTGT
CCCCTTGATAGTCATTTCGGTACGATTGCAAAAAAGATTGCATATTATCG
TGAACATATTTCAACCAACCTTGTAACCTTTGTGTTCAGGCTGAAGCAAT
CGCATTAACAGTGGCTCAAGCGTTCACAATGGCTTACGAGGAATGGGATG
AAAAATCGAAAGAAAGACAACGCGAAGTTGAAGATGAACAAGCATCTGAT
GCGCTAGAATTATATAAAGATCTAGCGTCGGAATCACCGAAACCCGATTC
TAATCCATTCAAGAAGGAAGACCAAGAAGatgatttcaatttcatttcaa
gttCACTGGCACCAAGAGTTCAAACCATCGTAAGttgtttttcaactttt
tttacgCTTCGCTAATTTAATATATCCCTGTCTCTTAGCAGTGAATGTTG
GAAAACCAATAGGCTATTTCACAATCGAAATGGATTATGGGTAATCAgta
ctgattgcgcctccataacggcttcccgttggctagactcaaaaaatctt
caaaaattttcaaaactttggaccaataggaaatcgtcattagcgcgcag
tgtTCCTGAtcacccattacgctttgcgcctgtgaaatggcctatggaAT
ATCTGAAACTcagtttcttttaaattcgagTAGGTAGGAAGACCAAAATG
TCGTTGAATTTCATAGAAATGAGTAGTTCGGCATACTAGACAACTAATAT
AGACGTATTATCGCATATCGATTGTTTTATGATGGATTATAAACTTATAT
ACTTATAGACTTCATGATATGAGATATTTCAGAAGAAAACAGACTTGACT
CGAATTCTGCTTTTTTCCACTAACATTGAGTTCTTTTTCATCATTAGGAG
ATAGTGGAACCATTGGATAACGAAACACATTCAGATGGTGCTTCATCGGA
CGATGATGAATTCTCAAGGTCAGTAACAGCAAAAGAAACCTTCCTCTTTT
CGCACCGGACACATTTGCGCCCGGTCTCAAGAGTTCCCGTAATGTAACAC
CGGACAGTTGTTTCTGTCGTAACTTGATAATACTTTTTGGCACAGGACAG
TCCGGAGCGTCGACAGGGTCATTTGGGTCAAATAAGGATTTTAATTACAG
AGTGATCGACTTCAATTTAACAGTGAAATACTAATTTATACGTCCGTAAA
TTTAAACAGACCTGATATCtacggaaatttcaaaattcattgccgtacta
GGCTACAAGTTATACGGTAAATAGACTTTGGTACTAAATTGTTGGAGTGT
CTTGAGACTCGAACTAATTTTTGAATCGCTAGTGAACATAGATATAACCG
TGCCAGAAATTCATTTAGAAGTACAAAGTGCATAGCTGTGACTTTGAGAC
GATGGTGTCTTTCCtatacttaaccaattttgtgaaaaagcaACTCCAAG
AATTGTTCTATTCCATTCGTATATTATAAACTttgtacagtatgtggccc
ccaaaacggcgatcaaatttgaaatttctctcaaatctagaggaaaag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002609	XLOC_002609	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000047	supercontig	sc0000047:401432..407979 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.85507e-05	3.94716e-10	0	0	0	0	1.02999	0	0.265512	0.313759	0	0	4.40907	9.28206	5.85501	2.74108	0	0	3.44278	0.822203	0.426142	1.12483	1.0749e-06	0	0	0	0	1.94458	0	0

Blast

[Close]

BLAST of TCONS_00004633 vs. Swiss-Prot (Human)
Match: ARH (Low density lipoprotein receptor adapter protein 1 OS=Homo sapiens GN=LDLRAP1 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.364e-36
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 1

Query:  214 MDSLKIAANKVKKSPKALKCKIDNALNKDKLTDNWIHNRENVQNGVVFNMKVLGKKVATTAQGKGCTDDAVKEMVQQHKVKGKTEKLLKVSMRVDSKKMIIRDLVTHELLEDVPVNRISYCTADPNFPKVFALIARERGSKTLFTHAFLTNKKEMAEAIALTVAQAFTMAYEEWDEKSKERQ-REVEDEQASDALELYKD 810
            MD+LK A   + +SP   K          KL +NW   RE +  G++F++K LG  +    +G+  +  A+K +V   K  GK  KL KV+++V  + +I+ D +T++L+E+V + RISYCTAD    KVFA IA+ + +++L  HAFL  K++MA+A+ LTVAQAF +A+E W    +E++ R+   ++  D L   +D
Sbjct:    1 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGK--KLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKEKRDKASQEGGDVLGARQD 198

The following BLAST results are available for this feature:

BLAST of TCONS_00004633 vs. Swiss-Prot (Human)

BLAST of TCONS_00004633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARH	1.364e-36	37.50	Low density lipoprotein receptor adapter protein 1...	[more]

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TCONS_00004633 (transcript) - C. hemisphaerica