TCONS_00004631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004631
Unique NameTCONS_00004631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004631 ID=TCONS_00004631|Name=TCONS_00004631|organism=Clytia hemisphaerica|type=transcript|length=1531bp
AATTTTCTTGTGTGTATCGTGAAGTCTTTGGTGAAGTTTTTGGTTTTACA
AACACATTCAAGAAAGAGAAGTTGTTGTGAATTTTTTAGTTTGAAGGTTT
ACGTGgagcaaaatttgaagattctACTTTACTGTCTAGGGGCCACAAAG
AAGAAGATCTAGCGTTGGGATAGCTATGGATTCATTGAAAATCGCTGCTA
ATAAAGTCAAGAAAAGCCCTAAAGCTTTGAAATGTAAAATTGATAATGCT
CTCAACAAGGATAAATTGACAGACAACTGGATTCACAACcgtgaaaatgt
tcaaaatggcGTCGTTTTTAATATGAAGGTGTTGGGCAAAAAAGTGGCGA
CAACGGCACAAGGGAAAGGATGTACAGATGACGCAGTCAAAGAAATGGTC
CAACAACATAAAGTGAAAGGCAAAACGGAGAAACTATTGAAAGTTTCAAT
GAGGGTGGATAGCAAGAAAATGATAATTCGAGATCTTGTTACACACGAAT
TACTCGAAGATGTTCCAGTCAATAGAATCTCCTATTGTACAGCTGATCCG
AATTTCCCAAAAGTCTTTGCGTTGATTGCACGAGAACGAGGTTCCAAAAC
ACTTTTCACGCATGCCTTCTTAACGAACAAGAAAGAAATGGCTGAAGCAA
TCGCATTAACAGTGGCTCAAGCGTTCACAATGGCTTACGAGGAATGGGAT
GAAAAATCGAAAGAAAGACAACGCGAAGTTGAAGATGAACAAGCATCTGA
TGCGCTAGAATTATATAAAGATCTAGCGTCGGAATCACCGAAACCCGATT
CTAATCCATTCAAGAAGGAAGACCAAGAAGatgatttcaatttcatttca
agttCACTGGCACCAAGAGTTCAAACCATCGAGATAGTGGAACCATTGGA
TAACGAAACACATTCAGATGGTGCTTCATCGGACGATGATGAATTCTCAA
GGTCAGTAACAGCAAAAGAAACCTTCCTCTTTTCGCACCGGACACATTTG
CGCCCGGTCTCAAGAGTTCCCGTAATGTAACACCGGACAGTTGTTTCTGT
CGTAACTTGATAATACTTTTTGGCACAGGACAGTCCGGAGCGTCGACAGG
GTCATTTGGGTCAAATAAGGATTTTAATTACAGAGTGATCGACTTCAATT
TAACAGTGAAATACTAATTTATACGTCCGTAAATTTAAACAGACCTGATA
TCtacggaaatttcaaaattcattgccgtactaGGCTACAAGTTATACGG
TAAATAGACTTTGGTACTAAATTGTTGGAGTGTCTTGAGACTCGAACTAA
TTTTTGAATCGCTAGTGAACATAGATATAACCGTGCCAGAAATTCATTTA
GAAGTACAAAGTGCATAGCTGTGACTTTGAGACGATGGTGTCTTTCCtat
acttaaccaattttgtgaaaaagcaACTCCAAGAATTGTTCTATTCCATT
CGTATATTATAAACTttgtacagtatgtggcccccaaaacggcgatcaaa
tttgaaatttctctcaaatctagaggaaaag
Run BLAST on NCBI

transcript from alignment at sc0000047:395430..407979+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004631 ID=TCONS_00004631|Name=TCONS_00004631|organism=Clytia hemisphaerica|type=transcript|length=12550bp|location=Sequence derived from alignment at sc0000047:395430..407979+ (Clytia hemisphaerica)
AATTTTCTTGTGTGTATCGTGAAGTCTTTGGTGAAGTTTTTGGTTTTACA
AACACATTCAAGAAAGAGAAGTTGTTGTGAATTTTTTAGTTTGAAGGTTT
ACGTGgagcaaaatttgaagattctACTTTACTGTCTAGGTATTTTTATA
AGCTTTGCTTTTTTTGAGTAAAAAGTTAACTCAAGCAGTTCGattctcaa
gattttttttatcgaatttgaaaattcaacttcTCACTTCtgcaatacac
ttttttttataagaaccaagtAAACTTTTGAAGAGGCTTAGCTGCTcttt
ttttgacactttgagcctcaaatgaTTCTCATCCTGTTCTTATTTGTATA
GTGAATTTAAGTTATTTAGgcattatacccaatttttactacttagccct
gaattgcttgaaatttagtaattccaggctcagagttgttcttaaattgt
tcttattttttgacaattttgagcttcattgttcttaaaaaatcgttttt
ataaaaaagtgtgtgaGGTTTTTCCTAGAGTTTTTTTGccagaataaaaa
aaaagggtCGAAAGATTTTATGAAATGCTCTGGCCATTATTAACAGGATT
ATGTTTAGGGAAAATCTTCTTTTCTTATCCCCTATGTAACTTTATTGTAC
TTTAAAAATCCCCATTTTCtctgtttgaaaaatcggaattATCTTCCTTT
TCGCAGCTTCTTCATACggaactttttcacaaaatcttctcacttcattt
tgaatataataTTATGTATTTACAcagatgaaatttgaaaatgtgatgaa
ataatgtcttttcatttatACGAGATATTTGTAATCATAAAATCGATCAG
TCTTTAAGAAAGATTTGTAGATATGATGAATTTATCAAATTGGGCGAGTG
TTGAGGCCTTTCgaggttttttttaaatatactttAATATATAGTAGTTT
ATATGTACCCTGGGGAggccaaatttgaaaaaacaattgTTGGGCAAGTA
TATCTTCTGTTTCTGTTGAGTGGACATTCCCTAAGTAGCTAGGGGGAGAT
ATACTGGAAGAATCTTAAGGTATTTTATTTACTCTTTTTTAAAGTGGGAA
CGTAATTTGGTTAACTTGGCGTATCCATCATTTTTGTTGTGATTTTTGGG
ACGGTGGTTGCTCCTGCTAAAGCTTAatcacaggggtgttttaaacGCTT
AAAGGATCTGGGAAACTTCTAAGGAGTCTTAGCTCTCAGCTGACACAAAA
CGTCGAAATAACGCTAGTtcaacgttagatggacgttgctAGTTTGTAGA
TATCCGTCCTTGAtttagtcagaaaatctgccgtatactatcttcgcttt
ctgatttgaatgatggcgctaCGATCTACTCCCCCCATCAGAATTATTAA
atgcaaaaagtagttgagctccagcttctggactatCCTTGATTCTATCT
TTATCAGTGTCGTGTTGTTTCGTCCTACTGCTTAAGTACTAAATACTTTA
ATTACACGCGCATTGCATTATCCTAATAAAGTCTtctaaagtatttattt
gatGAAATATAAGAATGATGGAAGTTGAGATATCCCTCTTAAAGTAATAG
CGTGGCCAAAGTTTAGGGGCTAAATTCGAATTAATGTTCAATTTTGTGTC
AAATTGTGGGGCACCTTTTTTACGGCTCTTTAACGTCTGGGGTATGATGC
TTTTAGGATTCTTCTCAAATAAATATCATGTTAGCGTAAGTCAAGAGTAA
TTCCACTTGGATGCAAAAAGAGTGCATGTACTCAATGCGAATGGACTTGA
CTATTGGTATATTCGTGTTATGGAGTCTGGTTTACAGAGCTTATAGAGAA
TCAGAAAACTTAAGAGGCTCAACTAAACGGTGTTTTTCCGGCTCATTTTT
AGAGTTTGTTATATAATCAAACAGTGTTGTTTCAAGACTCGTGTAATGGT
cattaaaaaattatgtcaaGACGTTGTATGCCAGCTTGCATGCCAGTTTC
gacacattttcaatttttgaaagatttgaatttatttcagggtttttttt
ctaagcactttgagATGGGACCGTTTTTGTAAACTTCGATTGAATTTCTA
ATATGCCTGAAAGGGAACTTGCTCAGCAAAGCCGTACATTGACGAAGCTG
AGGCTCTTGTTAGTGTTCAGAGGGCGAAGCTCCCAAAAGCTCTTTTCGTG
TAAAAATGacagatacacgttttttattagaacacttaaaatttggctga
gcctggatgtgcttatttttttagcaattttcagccttaaatgttcttaa
atgcgttcttaatttttcagactactctaaatcgacaatatcatacaaaa
taaagagcatataaaattggcacaatttggacaatatttgactctggatt
ttagaaaatccatgcctaagttgggttaaaactgcttgaaaagaagaaaa
attgtagtttcttgtcatttttttccaaactgaggctgggcatgttctta
cgacgttcttaatttttcgacgtatttcagcctaaatgttcttataaact
gggttctaataaaaaaaaaaaacgtgtatgcggATTGTTTAAAACTTCCA
GCCTGTAGAATCCATCTTTGTTTGATCCTGCCtggctggtacacaacgtt
gtttgacgtttttctattgttcacaacatccatataacgttaaaatgaac
attgaaacaacgctGTATCAGCTAGGTGAGAGAAATCTTAGAAATCTCAA
TGTGctttaccgtaagttggtctaatgtcgacatcccttttctaattttg
acacctttctttagagataggaataatatgaaggtcAGAATCGCTAATGG
AAACTATCTGTTTTTGCTTAGCGATCATAGAAGGAAAATCCCGACCTTCa
aattattcctatctctaaaaaaCTATGATGAGTTATGAAACAGATACAAA
TTTTGAACTCCTATCAACAGAACAATGGAAGGTTTTTGTCTTCTCGACAG
TTTAATAGAAAAGTATTATAACAAGGATTATAATAAGAGTTGActaaatt
cttattttaaaCTCAGAGTTTCAAGGTGGCTCCCGGGGGTGGGGGAGgta
tttaggcaaaatgggCGTCGGGTATGTAAGGGTCCCCTTTTCACACCAtc
gaaagtccctcaaaggggtccaaaaattattaaaaagctattgagtccct
gtaagggttccaaaattacgaaaataaaaGATCTGCTCCCTccaagggtc
ataaattcttgaattttcgactaaaatttgaaagttttgaaggTCACATA
CTTAGTACCCGtcaaaaatagacaaaattttcgaaattcaatctctctaa
gggtcgatttttggacttttgctcggacatacccgtcatctcacAAACCT
AGTACCTCCCGGTTTGAGTCTCAACGCCAGTGTTCAGTAAAGTAAGATAT
TTCTAGATAAACTATataatttcaacgtaagaaccctgtgatttcaaatt
acaaattgtcgcatcaaaataaaaaagctttaagttcatttttgttgttt
tgagaaaatctactttaaattatttttccttaaatcctgaaaaaccatta
acatttgaaaaaagttaagtccaaaaaatcgataaaaaatggGGTGTAAA
GCATCGGTATGGTTATAACTCAATTTTCCAGAAAATGGACTTAaagcttt
ttattttgatgtaaAGAAATTCTCGACTTGAAATTTAGGCCAAAAGATTG
GAGGTTTTACTCATGACAATAAAGTGTTTTTACTGCCGCCAAAAAGGTAT
TCTCACATTTTTTTAGTTCGTAATTGTTATTAGGCTTTagccagatttca
aaagttcttataaaattgttcttgtaaACTTACGAAATTTTACTTCACTT
TTTTAACAAACCGCAAGTGTTTAGATTGGGAAATaacaatcaaaaaaata
ttatttatcaCGTTCCCTGCTGAGCATAAATTTGACAAAAGTGGGGAAAT
TTCATAAccattttttcttgaaaatgattAGTATAACCAAGATGTCACAT
CACGTTTTTTCAAAGTTCTTTTAACGTTATTCGAATGTCATTCGGAAATG
AGAAAAGTTCCATTTTTTATCGCGGTTTCAATTCCTATTTTTCTAGATAG
AAAGACAATTTTTTCTTACTCAAGTCTAAAGTTAGCCTGCGTTTTCCTTT
CGCCATGTGTTATGCTTCCCTAGTGAAGCTTGGACGCCTCATCAATCTTT
CAACATTTTTACTTTAACAATCCTTTTCATGGGAAATAAAATCATAGTTT
TTCCAGTAGACTCATTGATTCGTATCTTTTTGCTGAGAAAAATATTAACA
ATTCCATTTTTCTCAAAGAACCAGAGatcttacaaaaaaattatcaattt
taattGGGGGTGACTTTTGAtggggcttttccagaaaaaacgtATACTCC
CTGTTGAGTAGGGccatccctctgtggctggaaatgctgtaacccctcTG
TAATACGCTCTTCTCGaaatgcataaatttattgttgtcctcgttttcaa
acagatttcattactataaaattacatattcacaattaTAATTGTGTCGT
TTaaacctcatgagacattttgaatttcaagtacttttgttttagagtta
atgttcgccttttgggaatttaaattggtttaaatgtataatttcatagc
aataaaatctgtttgaaaacgaggacaacaataaatttatgcatctcgag
aagagtattctgaattttagtaggatttaaaaagctacccccatggaatt
gcagttatttttgacagatttttgtatctccctatggaattccgccacat
atcaaaccttaccacCTTGGAATGGAAATGGATCTCCTCAACAAGCTCAG
ACTATTTTGATGTGATTATGAGATTCTTAACCTTCCCTAAGCGCTACCTC
CTTTCTCATCTTATGCGATGGTAACCAATAATACCAAGGGCATTCTATAC
GCTCTATGCTCCTCAGATCACTAATTTCGGCAACTAATTCCCTTCTTTGT
TTTGTATTACAAAATGTAGTATCTTGAATGACTTATCTTAACTCTGGTAT
ACtataaaggttttatttttacataagtgttcccgtttcatatcagacac
ataatTTATATCAGTGTCTGCCTAAtggttatattatgctgatttaagca
caaaaatgtttttcttttcctctttctaaccaatcttgctccacatctgt
gtcaattcaatgtaaaaaagtttgtgaattaaaattgatgagtaagcaaa
cgatatcacccttatttaaaaacaaaacctaaaGTAATTATAATATTAAG
TTTTGATGAAACAAATTTATCAGTTAAGAAAACATTTTCCCTGTAAGTTT
CCTTAAATAcaagtttttctttataagaactatttcaaaagaaaattgtc
CTTGAAATCGGGTCTGAACGTAAtgataagaacaaattaagagcAATTTT
GAGCCTAGAATTTCATATATATTCAAGAAAATACGCGCTTTTTCAGCCTT
TGTGTAAAGAAGCGTACCAATATGTAGTTAGTAAatgcccccagcggttt
gcgtgaatggaCTTTTTCGCTTGCGTCAATGCGTGAGTTGGAAAGCTTTG
CGTggacaaaaattgcgtgaattgcgagaaaatattgcgtgaatgcgtga
atttgggggAAAAAATGAGTGATCGTATGAATTGAAGGtctgctgggggg
gggggggctcgtaAATGTatcaataacatttttaaagaacattttacttg
agttttttgaaaaaaatagaaaactgTTGATACTTGCTCAAAATCtggtt
tttacaaaaaagaGGATATATAGGTTGTTGACAACATTGACGTTATCTTC
CTgatcaaggaaaagaaagaaagagatccttttgtttttgtttcccTATT
TTCGTTGTTTATAAATAATTGTTGTGATCACGAAAGATTTGTTTAGTTTG
TCCTTGCTCGTTCTACatcacaaacaaacaaagattatGTCACCTGTAGT
TTAGTGGCTTAGtttgattttaagatttcgtAGATTGATTTACTTGGTCA
TCAAGTTCTCCGAAATTTCCATTTTGTGGTTGTATAATATTCttggtttc
attttttgttattCAAGATGTCTACTGCGGTatgtttttgtttgcttttt
attttttgctgccTTATATAAGAGGACCCCCAAgaggttttcgtgatggc
gtgataggGCTTTTTTcctagcgtgattacgtgatttggaattttatttt
tcgtgattgcgtgatcaaaGGTCAAAATATGATCgtgatttaaaagattt
ttgagccgtgatgcgtgatttggactttttcaaagagaTGCGtgattatc
aaatttttttgctgatttccgtgatcgtgattgaagtcaaaaaattgcgt
gatatcgtgatcagagttaccgctgaGGGGAGGGGGCTCATAAAAATGTG
CTGTTTTAACCTTTGTGTGTGCAGTCTGACCTTTGTCGGCTGTCATTTGT
CGGCTGTATGTTTCTTGAGGAGCTTATCTTTTGGTATGTTGATTAAAAAT
CCAGGTAAATCATAAAGATTGTTTTGGGCTGTACCCGATTAACAagcatt
tgtaaaattttttagTTGTTTAATTAATCTCTGATTACTCTTTCATCGAC
TGTTTTACTTgctattattatttttcttcgtGCGAAAGTTTTGTCTGGTG
TCCTCGTTAGACTTTTcgttcttaaaaaatatttcacataTCAAAGCAGC
TTTTTTTTCCATAGATACATACAAAAATGTTGAATGAAGAACAGAACTTT
GAGGCGTTTCAAGTATTTCACTGAACAAAATTAAACTTCCCAGAACAGGC
TAGTTCAGTAGCGACCCagcaatgtcaattgaatatcGTTCTTTATTCTA
TTGACTATGGAGCCAGTGCTGGCTTTATCTTAGGTTTCCTCCTTTAATGC
TAATCAATCTAATCGAAATTCTGTGAAAAGTCTTTGAATCCGTGGAtaac
atttttgagatttaatcAAATTAGAATCGATCTCAATCGCTAAAAGTCTG
TAGATTTTTATCAATAACATCATTTCCATTCTTTTGCTAATGACTGTTGC
Acccgtttttttataagaacatcccaaacttttgaagcctgctgattttc
ttaactttctgagttcaaagcctaaaaattttcttaacatgttctagact
ggcacgccagtcgggctggaacggtatcacgcgggaaaagtgagcgtagg
agttaggtaagcgtaggaagaaattttgtcggcggcgagGGNNNNNNNNN
NNNNNNNNNNNNNNNgttaatcagcagcctctcaccaacttttgctcgct
ctcctacgcagctcctattctagcaaacgcccgccacctttatgttcccg
ccctctgacatgataaATTAACAGACTAGTATGCTAGtctaaacatgttc
ttaatttcacaattttgtgagtattttgtgCAATCTTCTATGAAATTGGT
TGTTTTAGATTCTGCAAAGAAAAGTTTGTTTTcctatataatttgttctt
aaaaaaatgtgtacttaTAAAGAGACTGATTGCATTTAAATAATCAAACA
GTACTATTTTAGTCCAGCCTTTGGTGTTCGTGTTCTGTACTTGTGTATTA
AACTGGGTTAAATCTCAAGAAATTTTCACCTTATTCGGGTAGGAACACTA
TAGCTGGTACTGACAAGTCTTACAAATAttgatatttgaaatttttgacc
tAACACTTTATGAAACCAAAAgtttttagattatttttgaaatgttttta
accaaaaatagTATTTCGTGCATATTACTTTCGGCAAATGCACAATTTTA
CACAGATCTTTCTTTCTGTATCGTTTCAGGGGCCACAAAGAAGAAGATCT
AGCGTTGGGATAGCTATGGATTCATTGAAAATCGCTGCTAATAAAGTCAA
GAAAAGCCCTAAAGCTTTGAAATGTAAAATTGATAATGCTCTCAACAAGG
ATAGTAAGTgatcctttgtattttttttggtctttttcctgtcaagaaaa
atttcctgaaatttcaaatttgtgttcctcgtgcgttttcgagttatgaa
gaccaCACTGTAAAAATCTTCTTGTTTTATCACCGCTAGTCAGAAGATTC
TCACTGCTACCGGGTCGTTGAGACAGGGTTGTTAGAGAATCTCCATTCGT
TGGTTTTCAGTAGCAGACTATATTCAGGTCTGTTTCATTTCTTAGTACAG
TGGTTGAATAACTATCGGATATCGAACATTGTCGGgtcaaaaatcataaa
tttcaagCAAAAGCAACCTTGTCCGGTCATTTTGACCGccccacttgaaa
tcgttatcTTCAGCCAAGGTAGAGGTACCTTCGAATTTCTTCTAGCTGTT
CGCAACATTCTTAACAAGTCTCGGTATTATCTTAACCTAATCATCATTAT
TGTTTTTCAGAATTGACAGACAACTGGATTCACAACcgtgaaaatgttca
aaatggcGTCGTTTTTAATATGAAGGTATTTATGGAATTCTTtgttttcg
atttttctttaATTCTTATATCAGTTACATTATATGAAAAGGAAATCTTT
GTGAAAGTATCACTATAGTAGTGAAATGTTTTCGGAAAGCAATTGGAAAT
CTCTTTTCAATTCTGATTTCATTTCTTTCGAATCTGTTTTTCCTCTTACT
CCGAATGACATATAATAAATTCCAATATGATTTACTCCAAGGTCATATAT
AATAATTTAAAGCCAGGCCAATGCTATGCTATGCCTAACCTAGCCAGGTA
TACATCAATGATTTCCCACTGAACTGTTAGCGCAAGCTAGAATTAgaact
agagtctacttctgactaGAATTTGCTTTCAGATGATTTTTAATTGAGTC
CAGAGATCCACCAATAAgtgccatccagtctatcataAAATCATAAGTGG
CCATCAAGCTAGCTATACCCTAGCCTCATAGGTGAAATAATTTCCAAAGA
AATAGGCATTTTTTCTCCACCCATAGGTGTTGGGCAAAAAAGTGGCGACA
ACGGCACAAGGGAAAGGATGTACAGATGACGCAGTCAAAGAAATGGTCCA
ACAACATAAAGTGGTAAGAATTGTGTAGCTGTGGTGTTCTTCAGTGGGCG
GTGATGTGATAGGGCGGAGAAGGTTATTTATAATAAGATGGGTGGATGTC
TAaacttttgacgtcaaaaatgttttgaaacgaATGTTCTGAACACAATG
AGCGTACAATAGACGATGTGGACAACAGATCCTTTTCATTTACCACCTGA
CTTCTGTCGCCCAGTTTTCTTTGGGTTAtcctttttttataatttttttt
ttagaccCCATATATTATGATATTGCTAAATGTTTTGAAGCTTAGTCAAC
AGAGTAAAAAAAGCATATTTTCCACATACCAGACTTACAGTATAATTTGG
TATCGCGATAATGAAAGAcgataagaaaaaaaacttcatttccttaaaag
gaaaaattaagTTCAGTCACATGTTGTTATTTCAAAGGAAGGAAAAACTT
AATGAGCATCTAATGACTGATAATTGGGAAAGAGCATTTTCATCCTGATG
CATCATGCGAAGGGAGGGAAATGCGTCATTTAAATATACAGTATCCTTTT
TACATTAATTTCGGTGCCTCATCTCTGTTTTCGTTCCTTCATACAACAGC
TTGTTAATTAGTCattaaaatgactagtaattaATCAATCCCTCTATAAA
TGGGTTCTCATAACAGATGTTAATTAGTTTTTTATATGTATCGAACTTCC
TCTTACAAGTATTTGAAGTGCGCAGAAGGAATACCCAAAAAAATCcgtaa
aacaaaaataaaaaaaactgtcaCTTTTATATGAAGGTACAATAGTCAAT
TACTGTCCCTGAACCCAGATTCTCTTTTGagatttaaatatttctttttt
tttcttacagAAAGGCAAAACGGAGAAACTATTGAAAGTTTCAATGAGGG
TGGATAGCAAGAAAATGATAATTCGAGATCTTGTTACACACGtatgtttc
ttcttttcatttcatttcattaaaatattttgattttttttaaaccccCG
GTTTGCTTTTACGTATTGTGGTCTGATCTGATAAACATTGTCATAGTCGT
CGTCTCGTCGTGAACCAAAAAATGGTCTTGATTCATCACTGTCAGGGGAG
ATAAAATCAGCTAACAGGCTTTTGTTACCACTCTGCACAAATTGATGGAA
GGTAATTTTAGTCAGGGAAAGTTTTAGTCacattttagtcatttttcccG
ATACACAAATTCCTACCGATTGTATTCTTACCACGTCCAGCCCTTTAATG
GGAGTTATTATTGCTTTATTTTAATATGTTATTGTTTTTTGTAGGAATTA
CTCGAAGATGTTCCAGTCAATAGAATCTCCTATTGTACAGCTGATCCGAA
TTTCCCAAAAGTCTTTGCGTTGATTGCACGAGAACGAGGTTCCAAAACAC
TTTTCACGCATGCCTTCTTAACGAACAAGAAAGAAATGGTAAGTAAATTA
GCCGAACTTAAGTTTCATCATCTCTAATTTCAGACAAAGATCTTATCACT
ACTTCCATTAGCTTgcatacagtcaactctctctaattcgaatttctatt
attcgaatctctctctaattcgaactataCTGTTTGTGCCCTCAGTTAAG
AAAtagtataaaatactttttctaattcgaagaaaattcctggtcccttg
aagatcgaattagaggaGGTAACTGTATTATAGGCTTGTAAACAAAGCCT
CTTGTAGCACTGTTTGTAATATATAACAAACAATAACGGAAAGGGCAAAC
ATGAACGTATAGATAGGTGCTTCGAGAAAAATGACGACAGTGTTGTTTCC
GAATGCAGTTGGTGAAGACGCGTGTTGGCCTGGGAATCTGAGATGACAAA
TCTAGGTTACAAAAGTAGATCTACTGCTCCATCAATCTAGAGAAAACAGT
GTCCCCTTGATAGTCATTTCGGTACGATTGCAAAAAAGATTGCATATTAT
CGTGAACATATTTCAACCAACCTTGTAACCTTTGTGTTCAGGCTGAAGCA
ATCGCATTAACAGTGGCTCAAGCGTTCACAATGGCTTACGAGGAATGGGA
TGAAAAATCGAAAGAAAGACAACGCGAAGTTGAAGATGAACAAGCATCTG
ATGCGCTAGAATTATATAAAGATCTAGCGTCGGAATCACCGAAACCCGAT
TCTAATCCATTCAAGAAGGAAGACCAAGAAGatgatttcaatttcatttc
aagttCACTGGCACCAAGAGTTCAAACCATCGTAAGttgtttttcaactt
tttttacgCTTCGCTAATTTAATATATCCCTGTCTCTTAGCAGTGAATGT
TGGAAAACCAATAGGCTATTTCACAATCGAAATGGATTATGGGTAATCAg
tactgattgcgcctccataacggcttcccgttggctagactcaaaaaatc
ttcaaaaattttcaaaactttggaccaataggaaatcgtcattagcgcgc
agtgtTCCTGAtcacccattacgctttgcgcctgtgaaatggcctatgga
ATATCTGAAACTcagtttcttttaaattcgagTAGGTAGGAAGACCAAAA
TGTCGTTGAATTTCATAGAAATGAGTAGTTCGGCATACTAGACAACTAAT
ATAGACGTATTATCGCATATCGATTGTTTTATGATGGATTATAAACTTAT
ATACTTATAGACTTCATGATATGAGATATTTCAGAAGAAAACAGACTTGA
CTCGAATTCTGCTTTTTTCCACTAACATTGAGTTCTTTTTCATCATTAGG
AGATAGTGGAACCATTGGATAACGAAACACATTCAGATGGTGCTTCATCG
GACGATGATGAATTCTCAAGGTCAGTAACAGCAAAAGAAACCTTCCTCTT
TTCGCACCGGACACATTTGCGCCCGGTCTCAAGAGTTCCCGTAATGTAAC
ACCGGACAGTTGTTTCTGTCGTAACTTGATAATACTTTTTGGCACAGGAC
AGTCCGGAGCGTCGACAGGGTCATTTGGGTCAAATAAGGATTTTAATTAC
AGAGTGATCGACTTCAATTTAACAGTGAAATACTAATTTATACGTCCGTA
AATTTAAACAGACCTGATATCtacggaaatttcaaaattcattgccgtac
taGGCTACAAGTTATACGGTAAATAGACTTTGGTACTAAATTGTTGGAGT
GTCTTGAGACTCGAACTAATTTTTGAATCGCTAGTGAACATAGATATAAC
CGTGCCAGAAATTCATTTAGAAGTACAAAGTGCATAGCTGTGACTTTGAG
ACGATGGTGTCTTTCCtatacttaaccaattttgtgaaaaagcaACTCCA
AGAATTGTTCTATTCCATTCGTATATTATAAACTttgtacagtatgtggc
ccccaaaacggcgatcaaatttgaaatttctctcaaatctagaggaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002609XLOC_002609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004631-exon-sc0000047-1491911889:395430..395568TCONS_00004631-exon-sc0000047-1491911889:395430..395568Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:395430..395568TCONS_00004631-exon-sc0000047-1510915933:395430..395568Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:395430..395568TCONS_00004631-exon-sc0000047-1575043694:395430..395568Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1491911889:403359..403482TCONS_00004631-exon-sc0000047-1491911889:403359..403482Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:403359..403482TCONS_00004631-exon-sc0000047-1510915933:403359..403482Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:403359..403482TCONS_00004631-exon-sc0000047-1575043694:403359..403482Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1491911889:403940..404004TCONS_00004631-exon-sc0000047-1491911889:403940..404004Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:403940..404004TCONS_00004631-exon-sc0000047-1510915933:403940..404004Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:403940..404004TCONS_00004631-exon-sc0000047-1575043694:403940..404004Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1491911889:404506..404592TCONS_00004631-exon-sc0000047-1491911889:404506..404592Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:404506..404592TCONS_00004631-exon-sc0000047-1510915933:404506..404592Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:404506..404592TCONS_00004631-exon-sc0000047-1575043694:404506..404592Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1491911889:405440..405520TCONS_00004631-exon-sc0000047-1491911889:405440..405520Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:405440..405520TCONS_00004631-exon-sc0000047-1510915933:405440..405520Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:405440..405520TCONS_00004631-exon-sc0000047-1575043694:405440..405520Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1491911889:405874..406017TCONS_00004631-exon-sc0000047-1491911889:405874..406017Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:405874..406017TCONS_00004631-exon-sc0000047-1510915933:405874..406017Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:405874..406017TCONS_00004631-exon-sc0000047-1575043694:405874..406017Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1491911889:406571..406810TCONS_00004631-exon-sc0000047-1491911889:406571..406810Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:406571..406810TCONS_00004631-exon-sc0000047-1510915933:406571..406810Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:406571..406810TCONS_00004631-exon-sc0000047-1575043694:406571..406810Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1491911889:407329..407979TCONS_00004631-exon-sc0000047-1491911889:407329..407979Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1510915933:407329..407979TCONS_00004631-exon-sc0000047-1510915933:407329..407979Clytia hemisphaericaexon
TCONS_00004631-exon-sc0000047-1575043694:407329..407979TCONS_00004631-exon-sc0000047-1575043694:407329..407979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:395430..407979 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.80584	9.62052	9.71218	15.1218	0.00172079	6.73387	0.0100305	0.0844207	2.86488	6.94119	2.68819	3.50878	17.3898	12.1032	3.17732	3.15015	1.5273	4.17973	11.204	6.80457	2.07033	0.746984	11.3291	5.35117	7.64295	6.86466	24.9072	20.2982	5.37313	5.43361
Blast
[Close]
BLAST of TCONS_00004631 vs. Swiss-Prot (Human)
Match: ARH (Low density lipoprotein receptor adapter protein 1 OS=Homo sapiens GN=LDLRAP1 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.287e-36
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 2 
Query:  176 MDSLKIAANKVKKSPKALKCKIDNALNKDKLTDNWIHNRENVQNGVVFNMKVLGKKVATTAQGKGCTDDAVKEMVQQHKVKGKTEKLLKVSMRVDSKKMIIRDLVTHELLEDVPVNRISYCTADPNFPKVFALIARERGSKTLFTHAFLTNKKEMAEAIALTVAQAFTMAYEEWDEKSKERQ-REVEDEQASDALELYKD 772
            MD+LK A   + +SP   K          KL +NW   RE +  G++F++K LG  +    +G+  +  A+K +V   K  GK  KL KV+++V  + +I+ D +T++L+E+V + RISYCTAD    KVFA IA+ + +++L  HAFL  K++MA+A+ LTVAQAF +A+E W    +E++ R+   ++  D L   +D
Sbjct:    1 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGK--KLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKEKRDKASQEGGDVLGARQD 198
The following BLAST results are available for this feature:
BLAST of TCONS_00004631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARH1.287e-3637.50Low density lipoprotein receptor adapter protein 1... [more]
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