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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004630 ID=TCONS_00004630|Name=TCONS_00004630|organism=Clytia hemisphaerica|type=transcript|length=1486bp
TTTTGATCTTGACTGCTAGCATTTTTGTGGCTGTTTTTTTACGTCGCAAA
GCTACCTACAGGTCAGATTGTGTTTGGTGTTTGATTCTCGTCCGGGGCCA
CAAAGAAGAAGATCTAGCGTTGGGATAGCTATGGATTCATTGAAAATCGC
TGCTAATAAAGTCAAGAAAAGCCCTAAAGCTTTGAAATGTAAAATTGATA
ATGCTCTCAACAAGGATAAATTGACAGACAACTGGATTCACAACcgtgaa
aatgttcaaaatggcGTCGTTTTTAATATGAAGGTGTTGGGCAAAAAAGT
GGCGACAACGGCACAAGGGAAAGGATGTACAGATGACGCAGTCAAAGAAA
TGGTCCAACAACATAAAGTGAAAGGCAAAACGGAGAAACTATTGAAAGTT
TCAATGAGGGTGGATAGCAAGAAAATGATAATTCGAGATCTTGTTACACA
CGAATTACTCGAAGATGTTCCAGTCAATAGAATCTCCTATTGTACAGCTG
ATCCGAATTTCCCAAAAGTCTTTGCGTTGATTGCACGAGAACGAGGTTCC
AAAACACTTTTCACGCATGCCTTCTTAACGAACAAGAAAGAAATGGCTGA
AGCAATCGCATTAACAGTGGCTCAAGCGTTCACAATGGCTTACGAGGAAT
GGGATGAAAAATCGAAAGAAAGACAACGCGAAGTTGAAGATGAACAAGCA
TCTGATGCGCTAGAATTATATAAAGATCTAGCGTCGGAATCACCGAAACC
CGATTCTAATCCATTCAAGAAGGAAGACCAAGAAGatgatttcaatttca
tttcaagttCACTGGCACCAAGAGTTCAAACCATCGAGATAGTGGAACCA
TTGGATAACGAAACACATTCAGATGGTGCTTCATCGGACGATGATGAATT
CTCAAGGTCAGTAACAGCAAAAGAAACCTTCCTCTTTTCGCACCGGACAC
ATTTGCGCCCGGTCTCAAGAGTTCCCGTAATGTAACACCGGACAGTTGTT
TCTGTCGTAACTTGATAATACTTTTTGGCACAGGACAGTCCGGAGCGTCG
ACAGGGTCATTTGGGTCAAATAAGGATTTTAATTACAGAGTGATCGACTT
CAATTTAACAGTGAAATACTAATTTATACGTCCGTAAATTTAAACAGACC
TGATATCtacggaaatttcaaaattcattgccgtactaGGCTACAAGTTA
TACGGTAAATAGACTTTGGTACTAAATTGTTGGAGTGTCTTGAGACTCGA
ACTAATTTTTGAATCGCTAGTGAACATAGATATAACCGTGCCAGAAATTC
ATTTAGAAGTACAAAGTGCATAGCTGTGACTTTGAGACGATGGTGTCTTT
CCtatacttaaccaattttgtgaaaaagcaACTCCAAGAATTGTTCTATT
CCATTCGTATATTATAAACTttgtacagtatgtggcccccaaaacggcga
tcaaatttgaaatttctctcaaatctagaggaaaag Run BLAST on NCBI transcript from alignment at sc0000047:391935..407979+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004630 ID=TCONS_00004630|Name=TCONS_00004630|organism=Clytia hemisphaerica|type=transcript|length=16045bp|location=Sequence derived from alignment at sc0000047:391935..407979+ (Clytia hemisphaerica)
TTTTGATCTTGACTGCTAGCATTTTTGTGGCTGTTTTTTTACGTCGCAAA
GCTACCTACAGGTCAGATTGTGTTTGGTGTTTGATTCTCGTCCGGTTAGT
TTGAGTTGGGTGAGTTTTAGGTGATTCCAGGATTTTTTTGTACAATCGAT
ATAAATTAATCGGCAATGCTCCATTGGAACAAAGGATAGGTCGTGTGTTT
ACCGACTATTGATTTCTCGAAATCTGATAATGAACACATTATTAGTCCGT
TAGTCTTTTTTATTGATTGTGAATCAATAAGCTCTAAACTTTAGAGTTTA
TCTCAGACTCAAAGTTCTAAGAATGGtctaatagtagggggaaatttgta
aaatcgctcgaattttttagtcaaagcacttgttatacatttttggaaag
ctaaggggtaggggaatcaaaataacttaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNagcgacctcaaaaaaacgaacaaatttccccctactataataT
ACACCACAAAgacaagaaaaatattaaaaactacgAAATTTGCTTTTCTT
CCAAATGGGGAAATCATGAGTGTCACGAGCATTATTAAGTTGTTGAATGA
CAATCCTGGGCGCTCTCCCCTCCCTTCGGGTaaagaaaagggagccttct
gATCGCCTCCAACGGTGGTCGTAAACCTATTATTCAGTTGTTGATATTGT
ATTGTACTTTGTCAAAGGCAAGTTCAGTATGAAAGCTAGTGAGTAATAGT
TGTCCCCGCATCGAAAGAGAAATTCGAAATAACAAGGGAAGAAAACGGGG
GATgtccacagatatctgtaaagcccgaagggctagataggcaactttaa
gcttactccagcaaaaaaaaaaagtgaagcaaaaatttgactttttaaat
gtcgtgccgatggatagaaTCTAGcattttcggagcgcgagatcaaaaag
attaggcggcaaacgctatttcgcatctctcaaaccagtgaaattgctct
ttgtcacgtgatttctttggtaggaataggaaatcctaccaaaacttgct
tcacttttcgataaaggccgcaatctagcccttcgggctttacagatatg
tGGTCGCTCTGGCTCATTATGGCTCATTTTGGCTCGCTCTGGCTCTTTCT
GCGGATTAGAAACACCgtagaaaaataccaaaataagtCTCCTTGTTGGG
CACCTTTTGCTTGATTGCTTGAGGGATATTATTACAGGGAACAAGGATGA
GTATTTTGAGAACAGTCTGGAGTTTCAGTCCTATTAAAGAGGGgcacttt
ttcgcaaattttcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCAAGCTTGATAACCTATTTTTGCATATTTGGCCC
TTGCATTCACTAACAATTGAGCCATTCCAGACTCGACGCTATTGTTAAAT
AGATcttattttggcatttttgagccatatcattcttataaaattgggat
gttctggagtttttataagatacttcagtaattggtcatttgaagtaatt
aaaatgacgcattctttagaaaaagcaataaaattgttgtattactggtt
aacgaccaaccaaatcaagaaagagcttataaaaactccagcttgtccca
taaAATTACTAATGTAGAAAAAGATAGATATTATACTTTGGGTAGAACAA
AACGTGATTAAAATTATTTCTTACAAAAAGTTCGTTCAGGCAATGACGCA
TAATCTTGATACCTTTCATAATACGGTTAAGAATGCTTTTCATGTATGTT
AATTAACTCTTTTATTAAGATATCATTATATCAAAGAAAAGTTAGTTTCG
TATGCTAATGGCTATTAATGAATGCCTACACTTCAGTTATTATTCAATTT
TCTTGTGTGTATCGTGAAGTCTTTGGTGAAGTTTTTGGTTTTACAAACAC
ATTCAAGAAAGAGAAGTTGTTGTGAATTTTTTAGTTTGAAGGTTTACGTG
gagcaaaatttgaagattctACTTTACTGTCTAGGTATTTTTATAAGCTT
TGCTTTTTTTGAGTAAAAAGTTAACTCAAGCAGTTCGattctcaagattt
tttttatcgaatttgaaaattcaacttcTCACTTCtgcaatacacttttt
tttataagaaccaagtAAACTTTTGAAGAGGCTTAGCTGCTctttttttg
acactttgagcctcaaatgaTTCTCATCCTGTTCTTATTTGTATAGTGAA
TTTAAGTTATTTAGgcattatacccaatttttactacttagccctgaatt
gcttgaaatttagtaattccaggctcagagttgttcttaaattgttctta
ttttttgacaattttgagcttcattgttcttaaaaaatcgtttttataaa
aaagtgtgtgaGGTTTTTCCTAGAGTTTTTTTGccagaataaaaaaaaag
ggtCGAAAGATTTTATGAAATGCTCTGGCCATTATTAACAGGATTATGTT
TAGGGAAAATCTTCTTTTCTTATCCCCTATGTAACTTTATTGTACTTTAA
AAATCCCCATTTTCtctgtttgaaaaatcggaattATCTTCCTTTTCGCA
GCTTCTTCATACggaactttttcacaaaatcttctcacttcattttgaat
ataataTTATGTATTTACAcagatgaaatttgaaaatgtgatgaaataat
gtcttttcatttatACGAGATATTTGTAATCATAAAATCGATCAGTCTTT
AAGAAAGATTTGTAGATATGATGAATTTATCAAATTGGGCGAGTGTTGAG
GCCTTTCgaggttttttttaaatatactttAATATATAGTAGTTTATATG
TACCCTGGGGAggccaaatttgaaaaaacaattgTTGGGCAAGTATATCT
TCTGTTTCTGTTGAGTGGACATTCCCTAAGTAGCTAGGGGGAGATATACT
GGAAGAATCTTAAGGTATTTTATTTACTCTTTTTTAAAGTGGGAACGTAA
TTTGGTTAACTTGGCGTATCCATCATTTTTGTTGTGATTTTTGGGACGGT
GGTTGCTCCTGCTAAAGCTTAatcacaggggtgttttaaacGCTTAAAGG
ATCTGGGAAACTTCTAAGGAGTCTTAGCTCTCAGCTGACACAAAACGTCG
AAATAACGCTAGTtcaacgttagatggacgttgctAGTTTGTAGATATCC
GTCCTTGAtttagtcagaaaatctgccgtatactatcttcgctttctgat
ttgaatgatggcgctaCGATCTACTCCCCCCATCAGAATTATTAAatgca
aaaagtagttgagctccagcttctggactatCCTTGATTCTATCTTTATC
AGTGTCGTGTTGTTTCGTCCTACTGCTTAAGTACTAAATACTTTAATTAC
ACGCGCATTGCATTATCCTAATAAAGTCTtctaaagtatttatttgatGA
AATATAAGAATGATGGAAGTTGAGATATCCCTCTTAAAGTAATAGCGTGG
CCAAAGTTTAGGGGCTAAATTCGAATTAATGTTCAATTTTGTGTCAAATT
GTGGGGCACCTTTTTTACGGCTCTTTAACGTCTGGGGTATGATGCTTTTA
GGATTCTTCTCAAATAAATATCATGTTAGCGTAAGTCAAGAGTAATTCCA
CTTGGATGCAAAAAGAGTGCATGTACTCAATGCGAATGGACTTGACTATT
GGTATATTCGTGTTATGGAGTCTGGTTTACAGAGCTTATAGAGAATCAGA
AAACTTAAGAGGCTCAACTAAACGGTGTTTTTCCGGCTCATTTTTAGAGT
TTGTTATATAATCAAACAGTGTTGTTTCAAGACTCGTGTAATGGTcatta
aaaaattatgtcaaGACGTTGTATGCCAGCTTGCATGCCAGTTTCgacac
attttcaatttttgaaagatttgaatttatttcagggttttttttctaag
cactttgagATGGGACCGTTTTTGTAAACTTCGATTGAATTTCTAATATG
CCTGAAAGGGAACTTGCTCAGCAAAGCCGTACATTGACGAAGCTGAGGCT
CTTGTTAGTGTTCAGAGGGCGAAGCTCCCAAAAGCTCTTTTCGTGTAAAA
ATGacagatacacgttttttattagaacacttaaaatttggctgagcctg
gatgtgcttatttttttagcaattttcagccttaaatgttcttaaatgcg
ttcttaatttttcagactactctaaatcgacaatatcatacaaaataaag
agcatataaaattggcacaatttggacaatatttgactctggattttaga
aaatccatgcctaagttgggttaaaactgcttgaaaagaagaaaaattgt
agtttcttgtcatttttttccaaactgaggctgggcatgttcttacgacg
ttcttaatttttcgacgtatttcagcctaaatgttcttataaactgggtt
ctaataaaaaaaaaaaacgtgtatgcggATTGTTTAAAACTTCCAGCCTG
TAGAATCCATCTTTGTTTGATCCTGCCtggctggtacacaacgttgtttg
acgtttttctattgttcacaacatccatataacgttaaaatgaacattga
aacaacgctGTATCAGCTAGGTGAGAGAAATCTTAGAAATCTCAATGTGc
tttaccgtaagttggtctaatgtcgacatcccttttctaattttgacacc
tttctttagagataggaataatatgaaggtcAGAATCGCTAATGGAAACT
ATCTGTTTTTGCTTAGCGATCATAGAAGGAAAATCCCGACCTTCaaatta
ttcctatctctaaaaaaCTATGATGAGTTATGAAACAGATACAAATTTTG
AACTCCTATCAACAGAACAATGGAAGGTTTTTGTCTTCTCGACAGTTTAA
TAGAAAAGTATTATAACAAGGATTATAATAAGAGTTGActaaattcttat
tttaaaCTCAGAGTTTCAAGGTGGCTCCCGGGGGTGGGGGAGgtatttag
gcaaaatgggCGTCGGGTATGTAAGGGTCCCCTTTTCACACCAtcgaaag
tccctcaaaggggtccaaaaattattaaaaagctattgagtccctgtaag
ggttccaaaattacgaaaataaaaGATCTGCTCCCTccaagggtcataaa
ttcttgaattttcgactaaaatttgaaagttttgaaggTCACATACTTAG
TACCCGtcaaaaatagacaaaattttcgaaattcaatctctctaagggtc
gatttttggacttttgctcggacatacccgtcatctcacAAACCTAGTAC
CTCCCGGTTTGAGTCTCAACGCCAGTGTTCAGTAAAGTAAGATATTTCTA
GATAAACTATataatttcaacgtaagaaccctgtgatttcaaattacaaa
ttgtcgcatcaaaataaaaaagctttaagttcatttttgttgttttgaga
aaatctactttaaattatttttccttaaatcctgaaaaaccattaacatt
tgaaaaaagttaagtccaaaaaatcgataaaaaatggGGTGTAAAGCATC
GGTATGGTTATAACTCAATTTTCCAGAAAATGGACTTAaagctttttatt
ttgatgtaaAGAAATTCTCGACTTGAAATTTAGGCCAAAAGATTGGAGGT
TTTACTCATGACAATAAAGTGTTTTTACTGCCGCCAAAAAGGTATTCTCA
CATTTTTTTAGTTCGTAATTGTTATTAGGCTTTagccagatttcaaaagt
tcttataaaattgttcttgtaaACTTACGAAATTTTACTTCACTTTTTTA
ACAAACCGCAAGTGTTTAGATTGGGAAATaacaatcaaaaaaatattatt
tatcaCGTTCCCTGCTGAGCATAAATTTGACAAAAGTGGGGAAATTTCAT
AAccattttttcttgaaaatgattAGTATAACCAAGATGTCACATCACGT
TTTTTCAAAGTTCTTTTAACGTTATTCGAATGTCATTCGGAAATGAGAAA
AGTTCCATTTTTTATCGCGGTTTCAATTCCTATTTTTCTAGATAGAAAGA
CAATTTTTTCTTACTCAAGTCTAAAGTTAGCCTGCGTTTTCCTTTCGCCA
TGTGTTATGCTTCCCTAGTGAAGCTTGGACGCCTCATCAATCTTTCAACA
TTTTTACTTTAACAATCCTTTTCATGGGAAATAAAATCATAGTTTTTCCA
GTAGACTCATTGATTCGTATCTTTTTGCTGAGAAAAATATTAACAATTCC
ATTTTTCTCAAAGAACCAGAGatcttacaaaaaaattatcaattttaatt
GGGGGTGACTTTTGAtggggcttttccagaaaaaacgtATACTCCCTGTT
GAGTAGGGccatccctctgtggctggaaatgctgtaacccctcTGTAATA
CGCTCTTCTCGaaatgcataaatttattgttgtcctcgttttcaaacaga
tttcattactataaaattacatattcacaattaTAATTGTGTCGTTTaaa
cctcatgagacattttgaatttcaagtacttttgttttagagttaatgtt
cgccttttgggaatttaaattggtttaaatgtataatttcatagcaataa
aatctgtttgaaaacgaggacaacaataaatttatgcatctcgagaagag
tattctgaattttagtaggatttaaaaagctacccccatggaattgcagt
tatttttgacagatttttgtatctccctatggaattccgccacatatcaa
accttaccacCTTGGAATGGAAATGGATCTCCTCAACAAGCTCAGACTAT
TTTGATGTGATTATGAGATTCTTAACCTTCCCTAAGCGCTACCTCCTTTC
TCATCTTATGCGATGGTAACCAATAATACCAAGGGCATTCTATACGCTCT
ATGCTCCTCAGATCACTAATTTCGGCAACTAATTCCCTTCTTTGTTTTGT
ATTACAAAATGTAGTATCTTGAATGACTTATCTTAACTCTGGTATACtat
aaaggttttatttttacataagtgttcccgtttcatatcagacacataat
TTATATCAGTGTCTGCCTAAtggttatattatgctgatttaagcacaaaa
atgtttttcttttcctctttctaaccaatcttgctccacatctgtgtcaa
ttcaatgtaaaaaagtttgtgaattaaaattgatgagtaagcaaacgata
tcacccttatttaaaaacaaaacctaaaGTAATTATAATATTAAGTTTTG
ATGAAACAAATTTATCAGTTAAGAAAACATTTTCCCTGTAAGTTTCCTTA
AATAcaagtttttctttataagaactatttcaaaagaaaattgtcCTTGA
AATCGGGTCTGAACGTAAtgataagaacaaattaagagcAATTTTGAGCC
TAGAATTTCATATATATTCAAGAAAATACGCGCTTTTTCAGCCTTTGTGT
AAAGAAGCGTACCAATATGTAGTTAGTAAatgcccccagcggtttgcgtg
aatggaCTTTTTCGCTTGCGTCAATGCGTGAGTTGGAAAGCTTTGCGTgg
acaaaaattgcgtgaattgcgagaaaatattgcgtgaatgcgtgaatttg
ggggAAAAAATGAGTGATCGTATGAATTGAAGGtctgctggggggggggg
ggctcgtaAATGTatcaataacatttttaaagaacattttacttgagttt
tttgaaaaaaatagaaaactgTTGATACTTGCTCAAAATCtggtttttac
aaaaaagaGGATATATAGGTTGTTGACAACATTGACGTTATCTTCCTgat
caaggaaaagaaagaaagagatccttttgtttttgtttcccTATTTTCGT
TGTTTATAAATAATTGTTGTGATCACGAAAGATTTGTTTAGTTTGTCCTT
GCTCGTTCTACatcacaaacaaacaaagattatGTCACCTGTAGTTTAGT
GGCTTAGtttgattttaagatttcgtAGATTGATTTACTTGGTCATCAAG
TTCTCCGAAATTTCCATTTTGTGGTTGTATAATATTCttggtttcatttt
ttgttattCAAGATGTCTACTGCGGTatgtttttgtttgctttttatttt
ttgctgccTTATATAAGAGGACCCCCAAgaggttttcgtgatggcgtgat
aggGCTTTTTTcctagcgtgattacgtgatttggaattttatttttcgtg
attgcgtgatcaaaGGTCAAAATATGATCgtgatttaaaagatttttgag
ccgtgatgcgtgatttggactttttcaaagagaTGCGtgattatcaaatt
tttttgctgatttccgtgatcgtgattgaagtcaaaaaattgcgtgatat
cgtgatcagagttaccgctgaGGGGAGGGGGCTCATAAAAATGTGCTGTT
TTAACCTTTGTGTGTGCAGTCTGACCTTTGTCGGCTGTCATTTGTCGGCT
GTATGTTTCTTGAGGAGCTTATCTTTTGGTATGTTGATTAAAAATCCAGG
TAAATCATAAAGATTGTTTTGGGCTGTACCCGATTAACAagcatttgtaa
aattttttagTTGTTTAATTAATCTCTGATTACTCTTTCATCGACTGTTT
TACTTgctattattatttttcttcgtGCGAAAGTTTTGTCTGGTGTCCTC
GTTAGACTTTTcgttcttaaaaaatatttcacataTCAAAGCAGCTTTTT
TTTCCATAGATACATACAAAAATGTTGAATGAAGAACAGAACTTTGAGGC
GTTTCAAGTATTTCACTGAACAAAATTAAACTTCCCAGAACAGGCTAGTT
CAGTAGCGACCCagcaatgtcaattgaatatcGTTCTTTATTCTATTGAC
TATGGAGCCAGTGCTGGCTTTATCTTAGGTTTCCTCCTTTAATGCTAATC
AATCTAATCGAAATTCTGTGAAAAGTCTTTGAATCCGTGGAtaacatttt
tgagatttaatcAAATTAGAATCGATCTCAATCGCTAAAAGTCTGTAGAT
TTTTATCAATAACATCATTTCCATTCTTTTGCTAATGACTGTTGCAcccg
tttttttataagaacatcccaaacttttgaagcctgctgattttcttaac
tttctgagttcaaagcctaaaaattttcttaacatgttctagactggcac
gccagtcgggctggaacggtatcacgcgggaaaagtgagcgtaggagtta
ggtaagcgtaggaagaaattttgtcggcggcgagGGNNNNNNNNNNNNNN
NNNNNNNNNNgttaatcagcagcctctcaccaacttttgctcgctctcct
acgcagctcctattctagcaaacgcccgccacctttatgttcccgccctc
tgacatgataaATTAACAGACTAGTATGCTAGtctaaacatgttcttaat
ttcacaattttgtgagtattttgtgCAATCTTCTATGAAATTGGTTGTTT
TAGATTCTGCAAAGAAAAGTTTGTTTTcctatataatttgttcttaaaaa
aatgtgtacttaTAAAGAGACTGATTGCATTTAAATAATCAAACAGTACT
ATTTTAGTCCAGCCTTTGGTGTTCGTGTTCTGTACTTGTGTATTAAACTG
GGTTAAATCTCAAGAAATTTTCACCTTATTCGGGTAGGAACACTATAGCT
GGTACTGACAAGTCTTACAAATAttgatatttgaaatttttgacctAACA
CTTTATGAAACCAAAAgtttttagattatttttgaaatgtttttaaccaa
aaatagTATTTCGTGCATATTACTTTCGGCAAATGCACAATTTTACACAG
ATCTTTCTTTCTGTATCGTTTCAGGGGCCACAAAGAAGAAGATCTAGCGT
TGGGATAGCTATGGATTCATTGAAAATCGCTGCTAATAAAGTCAAGAAAA
GCCCTAAAGCTTTGAAATGTAAAATTGATAATGCTCTCAACAAGGATAGT
AAGTgatcctttgtattttttttggtctttttcctgtcaagaaaaatttc
ctgaaatttcaaatttgtgttcctcgtgcgttttcgagttatgaagacca
CACTGTAAAAATCTTCTTGTTTTATCACCGCTAGTCAGAAGATTCTCACT
GCTACCGGGTCGTTGAGACAGGGTTGTTAGAGAATCTCCATTCGTTGGTT
TTCAGTAGCAGACTATATTCAGGTCTGTTTCATTTCTTAGTACAGTGGTT
GAATAACTATCGGATATCGAACATTGTCGGgtcaaaaatcataaatttca
agCAAAAGCAACCTTGTCCGGTCATTTTGACCGccccacttgaaatcgtt
atcTTCAGCCAAGGTAGAGGTACCTTCGAATTTCTTCTAGCTGTTCGCAA
CATTCTTAACAAGTCTCGGTATTATCTTAACCTAATCATCATTATTGTTT
TTCAGAATTGACAGACAACTGGATTCACAACcgtgaaaatgttcaaaatg
gcGTCGTTTTTAATATGAAGGTATTTATGGAATTCTTtgttttcgatttt
tctttaATTCTTATATCAGTTACATTATATGAAAAGGAAATCTTTGTGAA
AGTATCACTATAGTAGTGAAATGTTTTCGGAAAGCAATTGGAAATCTCTT
TTCAATTCTGATTTCATTTCTTTCGAATCTGTTTTTCCTCTTACTCCGAA
TGACATATAATAAATTCCAATATGATTTACTCCAAGGTCATATATAATAA
TTTAAAGCCAGGCCAATGCTATGCTATGCCTAACCTAGCCAGGTATACAT
CAATGATTTCCCACTGAACTGTTAGCGCAAGCTAGAATTAgaactagagt
ctacttctgactaGAATTTGCTTTCAGATGATTTTTAATTGAGTCCAGAG
ATCCACCAATAAgtgccatccagtctatcataAAATCATAAGTGGCCATC
AAGCTAGCTATACCCTAGCCTCATAGGTGAAATAATTTCCAAAGAAATAG
GCATTTTTTCTCCACCCATAGGTGTTGGGCAAAAAAGTGGCGACAACGGC
ACAAGGGAAAGGATGTACAGATGACGCAGTCAAAGAAATGGTCCAACAAC
ATAAAGTGGTAAGAATTGTGTAGCTGTGGTGTTCTTCAGTGGGCGGTGAT
GTGATAGGGCGGAGAAGGTTATTTATAATAAGATGGGTGGATGTCTAaac
ttttgacgtcaaaaatgttttgaaacgaATGTTCTGAACACAATGAGCGT
ACAATAGACGATGTGGACAACAGATCCTTTTCATTTACCACCTGACTTCT
GTCGCCCAGTTTTCTTTGGGTTAtcctttttttataattttttttttaga
ccCCATATATTATGATATTGCTAAATGTTTTGAAGCTTAGTCAACAGAGT
AAAAAAAGCATATTTTCCACATACCAGACTTACAGTATAATTTGGTATCG
CGATAATGAAAGAcgataagaaaaaaaacttcatttccttaaaaggaaaa
attaagTTCAGTCACATGTTGTTATTTCAAAGGAAGGAAAAACTTAATGA
GCATCTAATGACTGATAATTGGGAAAGAGCATTTTCATCCTGATGCATCA
TGCGAAGGGAGGGAAATGCGTCATTTAAATATACAGTATCCTTTTTACAT
TAATTTCGGTGCCTCATCTCTGTTTTCGTTCCTTCATACAACAGCTTGTT
AATTAGTCattaaaatgactagtaattaATCAATCCCTCTATAAATGGGT
TCTCATAACAGATGTTAATTAGTTTTTTATATGTATCGAACTTCCTCTTA
CAAGTATTTGAAGTGCGCAGAAGGAATACCCAAAAAAATCcgtaaaacaa
aaataaaaaaaactgtcaCTTTTATATGAAGGTACAATAGTCAATTACTG
TCCCTGAACCCAGATTCTCTTTTGagatttaaatatttctttttttttct
tacagAAAGGCAAAACGGAGAAACTATTGAAAGTTTCAATGAGGGTGGAT
AGCAAGAAAATGATAATTCGAGATCTTGTTACACACGtatgtttcttctt
ttcatttcatttcattaaaatattttgattttttttaaaccccCGGTTTG
CTTTTACGTATTGTGGTCTGATCTGATAAACATTGTCATAGTCGTCGTCT
CGTCGTGAACCAAAAAATGGTCTTGATTCATCACTGTCAGGGGAGATAAA
ATCAGCTAACAGGCTTTTGTTACCACTCTGCACAAATTGATGGAAGGTAA
TTTTAGTCAGGGAAAGTTTTAGTCacattttagtcatttttcccGATACA
CAAATTCCTACCGATTGTATTCTTACCACGTCCAGCCCTTTAATGGGAGT
TATTATTGCTTTATTTTAATATGTTATTGTTTTTTGTAGGAATTACTCGA
AGATGTTCCAGTCAATAGAATCTCCTATTGTACAGCTGATCCGAATTTCC
CAAAAGTCTTTGCGTTGATTGCACGAGAACGAGGTTCCAAAACACTTTTC
ACGCATGCCTTCTTAACGAACAAGAAAGAAATGGTAAGTAAATTAGCCGA
ACTTAAGTTTCATCATCTCTAATTTCAGACAAAGATCTTATCACTACTTC
CATTAGCTTgcatacagtcaactctctctaattcgaatttctattattcg
aatctctctctaattcgaactataCTGTTTGTGCCCTCAGTTAAGAAAta
gtataaaatactttttctaattcgaagaaaattcctggtcccttgaagat
cgaattagaggaGGTAACTGTATTATAGGCTTGTAAACAAAGCCTCTTGT
AGCACTGTTTGTAATATATAACAAACAATAACGGAAAGGGCAAACATGAA
CGTATAGATAGGTGCTTCGAGAAAAATGACGACAGTGTTGTTTCCGAATG
CAGTTGGTGAAGACGCGTGTTGGCCTGGGAATCTGAGATGACAAATCTAG
GTTACAAAAGTAGATCTACTGCTCCATCAATCTAGAGAAAACAGTGTCCC
CTTGATAGTCATTTCGGTACGATTGCAAAAAAGATTGCATATTATCGTGA
ACATATTTCAACCAACCTTGTAACCTTTGTGTTCAGGCTGAAGCAATCGC
ATTAACAGTGGCTCAAGCGTTCACAATGGCTTACGAGGAATGGGATGAAA
AATCGAAAGAAAGACAACGCGAAGTTGAAGATGAACAAGCATCTGATGCG
CTAGAATTATATAAAGATCTAGCGTCGGAATCACCGAAACCCGATTCTAA
TCCATTCAAGAAGGAAGACCAAGAAGatgatttcaatttcatttcaagtt
CACTGGCACCAAGAGTTCAAACCATCGTAAGttgtttttcaacttttttt
acgCTTCGCTAATTTAATATATCCCTGTCTCTTAGCAGTGAATGTTGGAA
AACCAATAGGCTATTTCACAATCGAAATGGATTATGGGTAATCAgtactg
attgcgcctccataacggcttcccgttggctagactcaaaaaatcttcaa
aaattttcaaaactttggaccaataggaaatcgtcattagcgcgcagtgt
TCCTGAtcacccattacgctttgcgcctgtgaaatggcctatggaATATC
TGAAACTcagtttcttttaaattcgagTAGGTAGGAAGACCAAAATGTCG
TTGAATTTCATAGAAATGAGTAGTTCGGCATACTAGACAACTAATATAGA
CGTATTATCGCATATCGATTGTTTTATGATGGATTATAAACTTATATACT
TATAGACTTCATGATATGAGATATTTCAGAAGAAAACAGACTTGACTCGA
ATTCTGCTTTTTTCCACTAACATTGAGTTCTTTTTCATCATTAGGAGATA
GTGGAACCATTGGATAACGAAACACATTCAGATGGTGCTTCATCGGACGA
TGATGAATTCTCAAGGTCAGTAACAGCAAAAGAAACCTTCCTCTTTTCGC
ACCGGACACATTTGCGCCCGGTCTCAAGAGTTCCCGTAATGTAACACCGG
ACAGTTGTTTCTGTCGTAACTTGATAATACTTTTTGGCACAGGACAGTCC
GGAGCGTCGACAGGGTCATTTGGGTCAAATAAGGATTTTAATTACAGAGT
GATCGACTTCAATTTAACAGTGAAATACTAATTTATACGTCCGTAAATTT
AAACAGACCTGATATCtacggaaatttcaaaattcattgccgtactaGGC
TACAAGTTATACGGTAAATAGACTTTGGTACTAAATTGTTGGAGTGTCTT
GAGACTCGAACTAATTTTTGAATCGCTAGTGAACATAGATATAACCGTGC
CAGAAATTCATTTAGAAGTACAAAGTGCATAGCTGTGACTTTGAGACGAT
GGTGTCTTTCCtatacttaaccaattttgtgaaaaagcaACTCCAAGAAT
TGTTCTATTCCATTCGTATATTATAAACTttgtacagtatgtggccccca
aaacggcgatcaaatttgaaatttctctcaaatctagaggaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004630-exon-sc0000047-1491911889:391935..392028 | TCONS_00004630-exon-sc0000047-1491911889:391935..392028 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:391935..392028 | TCONS_00004630-exon-sc0000047-1510915933:391935..392028 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:391935..392028 | TCONS_00004630-exon-sc0000047-1575043694:391935..392028 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1491911889:403359..403482 | TCONS_00004630-exon-sc0000047-1491911889:403359..403482 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:403359..403482 | TCONS_00004630-exon-sc0000047-1510915933:403359..403482 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:403359..403482 | TCONS_00004630-exon-sc0000047-1575043694:403359..403482 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1491911889:403940..404004 | TCONS_00004630-exon-sc0000047-1491911889:403940..404004 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:403940..404004 | TCONS_00004630-exon-sc0000047-1510915933:403940..404004 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:403940..404004 | TCONS_00004630-exon-sc0000047-1575043694:403940..404004 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1491911889:404506..404592 | TCONS_00004630-exon-sc0000047-1491911889:404506..404592 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:404506..404592 | TCONS_00004630-exon-sc0000047-1510915933:404506..404592 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:404506..404592 | TCONS_00004630-exon-sc0000047-1575043694:404506..404592 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1491911889:405440..405520 | TCONS_00004630-exon-sc0000047-1491911889:405440..405520 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:405440..405520 | TCONS_00004630-exon-sc0000047-1510915933:405440..405520 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:405440..405520 | TCONS_00004630-exon-sc0000047-1575043694:405440..405520 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1491911889:405874..406017 | TCONS_00004630-exon-sc0000047-1491911889:405874..406017 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:405874..406017 | TCONS_00004630-exon-sc0000047-1510915933:405874..406017 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:405874..406017 | TCONS_00004630-exon-sc0000047-1575043694:405874..406017 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1491911889:406571..406810 | TCONS_00004630-exon-sc0000047-1491911889:406571..406810 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:406571..406810 | TCONS_00004630-exon-sc0000047-1510915933:406571..406810 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:406571..406810 | TCONS_00004630-exon-sc0000047-1575043694:406571..406810 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1491911889:407329..407979 | TCONS_00004630-exon-sc0000047-1491911889:407329..407979 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1510915933:407329..407979 | TCONS_00004630-exon-sc0000047-1510915933:407329..407979 | Clytia hemisphaerica | exon |
| TCONS_00004630-exon-sc0000047-1575043694:407329..407979 | TCONS_00004630-exon-sc0000047-1575043694:407329..407979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:391935..407979 + |
Blast
BLAST of TCONS_00004630 vs. Swiss-Prot (Human)
Match: ARH (Low density lipoprotein receptor adapter protein 1 OS=Homo sapiens GN=LDLRAP1 PE=1 SV=3) HSP 1 Score: 138.658 bits (348), Expect = 1.309e-36 Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 2
Query: 131 MDSLKIAANKVKKSPKALKCKIDNALNKDKLTDNWIHNRENVQNGVVFNMKVLGKKVATTAQGKGCTDDAVKEMVQQHKVKGKTEKLLKVSMRVDSKKMIIRDLVTHELLEDVPVNRISYCTADPNFPKVFALIARERGSKTLFTHAFLTNKKEMAEAIALTVAQAFTMAYEEWDEKSKERQ-REVEDEQASDALELYKD 727
MD+LK A + +SP K KL +NW RE + G++F++K LG + +G+ + A+K +V K GK KL KV+++V + +I+ D +T++L+E+V + RISYCTAD KVFA IA+ + +++L HAFL K++MA+A+ LTVAQAF +A+E W +E++ R+ ++ D L +D
Sbjct: 1 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGK--KLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKEKRDKASQEGGDVLGARQD 198
The following BLAST results are available for this feature:
|
