TCONS_00004629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004629
Unique NameTCONS_00004629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004629 ID=TCONS_00004629|Name=TCONS_00004629|organism=Clytia hemisphaerica|type=transcript|length=1487bp
GTGCTGTGGTGAAGTTTGTTTAAAATTCTTTTCGTCGAACAGTGGTACAG
CGAATTTCAAGACTCGCGAATAAAAAGAATACTTCAAGTACTATGGGGCC
ACAAAGAAGAAGATCTAGCGTTGGGATAGCTATGGATTCATTGAAAATCG
CTGCTAATAAAGTCAAGAAAAGCCCTAAAGCTTTGAAATGTAAAATTGAT
AATGCTCTCAACAAGGATAAATTGACAGACAACTGGATTCACAACcgtga
aaatgttcaaaatggcGTCGTTTTTAATATGAAGGTGTTGGGCAAAAAAG
TGGCGACAACGGCACAAGGGAAAGGATGTACAGATGACGCAGTCAAAGAA
ATGGTCCAACAACATAAAGTGAAAGGCAAAACGGAGAAACTATTGAAAGT
TTCAATGAGGGTGGATAGCAAGAAAATGATAATTCGAGATCTTGTTACAC
ACGAATTACTCGAAGATGTTCCAGTCAATAGAATCTCCTATTGTACAGCT
GATCCGAATTTCCCAAAAGTCTTTGCGTTGATTGCACGAGAACGAGGTTC
CAAAACACTTTTCACGCATGCCTTCTTAACGAACAAGAAAGAAATGGCTG
AAGCAATCGCATTAACAGTGGCTCAAGCGTTCACAATGGCTTACGAGGAA
TGGGATGAAAAATCGAAAGAAAGACAACGCGAAGTTGAAGATGAACAAGC
ATCTGATGCGCTAGAATTATATAAAGATCTAGCGTCGGAATCACCGAAAC
CCGATTCTAATCCATTCAAGAAGGAAGACCAAGAAGatgatttcaatttc
atttcaagttCACTGGCACCAAGAGTTCAAACCATCGAGATAGTGGAACC
ATTGGATAACGAAACACATTCAGATGGTGCTTCATCGGACGATGATGAAT
TCTCAAGGTCAGTAACAGCAAAAGAAACCTTCCTCTTTTCGCACCGGACA
CATTTGCGCCCGGTCTCAAGAGTTCCCGTAATGTAACACCGGACAGTTGT
TTCTGTCGTAACTTGATAATACTTTTTGGCACAGGACAGTCCGGAGCGTC
GACAGGGTCATTTGGGTCAAATAAGGATTTTAATTACAGAGTGATCGACT
TCAATTTAACAGTGAAATACTAATTTATACGTCCGTAAATTTAAACAGAC
CTGATATCtacggaaatttcaaaattcattgccgtactaGGCTACAAGTT
ATACGGTAAATAGACTTTGGTACTAAATTGTTGGAGTGTCTTGAGACTCG
AACTAATTTTTGAATCGCTAGTGAACATAGATATAACCGTGCCAGAAATT
CATTTAGAAGTACAAAGTGCATAGCTGTGACTTTGAGACGATGGTGTCTT
TCCtatacttaaccaattttgtgaaaaagcaACTCCAAGAATTGTTCTAT
TCCATTCGTATATTATAAACTttgtacagtatgtggcccccaaaacggcg
atcaaatttgaaatttctctcaaatctagaggaaaag
Run BLAST on NCBI

transcript from alignment at sc0000047:391726..407979+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004629 ID=TCONS_00004629|Name=TCONS_00004629|organism=Clytia hemisphaerica|type=transcript|length=16254bp|location=Sequence derived from alignment at sc0000047:391726..407979+ (Clytia hemisphaerica)
GTGCTGTGGTGAAGTTTGTTTAAAATTCTTTTCGTCGAACAGTGGTACAG
CGAATTTCAAGACTCGCGAATAAAAAGAATACTTCAAGTACTATGGtaat
aaaataattcgaatTGTTTTATGGTTTTTATACGAGGTAGCAATAGAATT
CATAATAGATTGTTATGAACTTATAAATGTGTCAATTAAGAACTGACTTG
GGATATAATTTTTGATCTTGACTGCTAGCATTTTTGTGGCTGTTTTTTTA
CGTCGCAAAGCTACCTACAGGTCAGATTGTGTTTGGTGTTTGATTCTCGT
CCGGTTAGTTTGAGTTGGGTGAGTTTTAGGTGATTCCAGGATTTTTTTGT
ACAATCGATATAAATTAATCGGCAATGCTCCATTGGAACAAAGGATAGGT
CGTGTGTTTACCGACTATTGATTTCTCGAAATCTGATAATGAACACATTA
TTAGTCCGTTAGTCTTTTTTATTGATTGTGAATCAATAAGCTCTAAACTT
TAGAGTTTATCTCAGACTCAAAGTTCTAAGAATGGtctaatagtaggggg
aaatttgtaaaatcgctcgaattttttagtcaaagcacttgttatacatt
tttggaaagctaaggggtaggggaatcaaaataacttaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNagcgacctcaaaaaaacgaacaaatttcccccta
ctataataTACACCACAAAgacaagaaaaatattaaaaactacgAAATTT
GCTTTTCTTCCAAATGGGGAAATCATGAGTGTCACGAGCATTATTAAGTT
GTTGAATGACAATCCTGGGCGCTCTCCCCTCCCTTCGGGTaaagaaaagg
gagccttctgATCGCCTCCAACGGTGGTCGTAAACCTATTATTCAGTTGT
TGATATTGTATTGTACTTTGTCAAAGGCAAGTTCAGTATGAAAGCTAGTG
AGTAATAGTTGTCCCCGCATCGAAAGAGAAATTCGAAATAACAAGGGAAG
AAAACGGGGGATgtccacagatatctgtaaagcccgaagggctagatagg
caactttaagcttactccagcaaaaaaaaaaagtgaagcaaaaatttgac
tttttaaatgtcgtgccgatggatagaaTCTAGcattttcggagcgcgag
atcaaaaagattaggcggcaaacgctatttcgcatctctcaaaccagtga
aattgctctttgtcacgtgatttctttggtaggaataggaaatcctacca
aaacttgcttcacttttcgataaaggccgcaatctagcccttcgggcttt
acagatatgtGGTCGCTCTGGCTCATTATGGCTCATTTTGGCTCGCTCTG
GCTCTTTCTGCGGATTAGAAACACCgtagaaaaataccaaaataagtCTC
CTTGTTGGGCACCTTTTGCTTGATTGCTTGAGGGATATTATTACAGGGAA
CAAGGATGAGTATTTTGAGAACAGTCTGGAGTTTCAGTCCTATTAAAGAG
GGgcactttttcgcaaattttcaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCAAGCTTGATAACCTATTTTTGCAT
ATTTGGCCCTTGCATTCACTAACAATTGAGCCATTCCAGACTCGACGCTA
TTGTTAAATAGATcttattttggcatttttgagccatatcattcttataa
aattgggatgttctggagtttttataagatacttcagtaattggtcattt
gaagtaattaaaatgacgcattctttagaaaaagcaataaaattgttgta
ttactggttaacgaccaaccaaatcaagaaagagcttataaaaactccag
cttgtcccataaAATTACTAATGTAGAAAAAGATAGATATTATACTTTGG
GTAGAACAAAACGTGATTAAAATTATTTCTTACAAAAAGTTCGTTCAGGC
AATGACGCATAATCTTGATACCTTTCATAATACGGTTAAGAATGCTTTTC
ATGTATGTTAATTAACTCTTTTATTAAGATATCATTATATCAAAGAAAAG
TTAGTTTCGTATGCTAATGGCTATTAATGAATGCCTACACTTCAGTTATT
ATTCAATTTTCTTGTGTGTATCGTGAAGTCTTTGGTGAAGTTTTTGGTTT
TACAAACACATTCAAGAAAGAGAAGTTGTTGTGAATTTTTTAGTTTGAAG
GTTTACGTGgagcaaaatttgaagattctACTTTACTGTCTAGGTATTTT
TATAAGCTTTGCTTTTTTTGAGTAAAAAGTTAACTCAAGCAGTTCGattc
tcaagattttttttatcgaatttgaaaattcaacttcTCACTTCtgcaat
acacttttttttataagaaccaagtAAACTTTTGAAGAGGCTTAGCTGCT
ctttttttgacactttgagcctcaaatgaTTCTCATCCTGTTCTTATTTG
TATAGTGAATTTAAGTTATTTAGgcattatacccaatttttactacttag
ccctgaattgcttgaaatttagtaattccaggctcagagttgttcttaaa
ttgttcttattttttgacaattttgagcttcattgttcttaaaaaatcgt
ttttataaaaaagtgtgtgaGGTTTTTCCTAGAGTTTTTTTGccagaata
aaaaaaaagggtCGAAAGATTTTATGAAATGCTCTGGCCATTATTAACAG
GATTATGTTTAGGGAAAATCTTCTTTTCTTATCCCCTATGTAACTTTATT
GTACTTTAAAAATCCCCATTTTCtctgtttgaaaaatcggaattATCTTC
CTTTTCGCAGCTTCTTCATACggaactttttcacaaaatcttctcacttc
attttgaatataataTTATGTATTTACAcagatgaaatttgaaaatgtga
tgaaataatgtcttttcatttatACGAGATATTTGTAATCATAAAATCGA
TCAGTCTTTAAGAAAGATTTGTAGATATGATGAATTTATCAAATTGGGCG
AGTGTTGAGGCCTTTCgaggttttttttaaatatactttAATATATAGTA
GTTTATATGTACCCTGGGGAggccaaatttgaaaaaacaattgTTGGGCA
AGTATATCTTCTGTTTCTGTTGAGTGGACATTCCCTAAGTAGCTAGGGGG
AGATATACTGGAAGAATCTTAAGGTATTTTATTTACTCTTTTTTAAAGTG
GGAACGTAATTTGGTTAACTTGGCGTATCCATCATTTTTGTTGTGATTTT
TGGGACGGTGGTTGCTCCTGCTAAAGCTTAatcacaggggtgttttaaac
GCTTAAAGGATCTGGGAAACTTCTAAGGAGTCTTAGCTCTCAGCTGACAC
AAAACGTCGAAATAACGCTAGTtcaacgttagatggacgttgctAGTTTG
TAGATATCCGTCCTTGAtttagtcagaaaatctgccgtatactatcttcg
ctttctgatttgaatgatggcgctaCGATCTACTCCCCCCATCAGAATTA
TTAAatgcaaaaagtagttgagctccagcttctggactatCCTTGATTCT
ATCTTTATCAGTGTCGTGTTGTTTCGTCCTACTGCTTAAGTACTAAATAC
TTTAATTACACGCGCATTGCATTATCCTAATAAAGTCTtctaaagtattt
atttgatGAAATATAAGAATGATGGAAGTTGAGATATCCCTCTTAAAGTA
ATAGCGTGGCCAAAGTTTAGGGGCTAAATTCGAATTAATGTTCAATTTTG
TGTCAAATTGTGGGGCACCTTTTTTACGGCTCTTTAACGTCTGGGGTATG
ATGCTTTTAGGATTCTTCTCAAATAAATATCATGTTAGCGTAAGTCAAGA
GTAATTCCACTTGGATGCAAAAAGAGTGCATGTACTCAATGCGAATGGAC
TTGACTATTGGTATATTCGTGTTATGGAGTCTGGTTTACAGAGCTTATAG
AGAATCAGAAAACTTAAGAGGCTCAACTAAACGGTGTTTTTCCGGCTCAT
TTTTAGAGTTTGTTATATAATCAAACAGTGTTGTTTCAAGACTCGTGTAA
TGGTcattaaaaaattatgtcaaGACGTTGTATGCCAGCTTGCATGCCAG
TTTCgacacattttcaatttttgaaagatttgaatttatttcagggtttt
ttttctaagcactttgagATGGGACCGTTTTTGTAAACTTCGATTGAATT
TCTAATATGCCTGAAAGGGAACTTGCTCAGCAAAGCCGTACATTGACGAA
GCTGAGGCTCTTGTTAGTGTTCAGAGGGCGAAGCTCCCAAAAGCTCTTTT
CGTGTAAAAATGacagatacacgttttttattagaacacttaaaatttgg
ctgagcctggatgtgcttatttttttagcaattttcagccttaaatgttc
ttaaatgcgttcttaatttttcagactactctaaatcgacaatatcatac
aaaataaagagcatataaaattggcacaatttggacaatatttgactctg
gattttagaaaatccatgcctaagttgggttaaaactgcttgaaaagaag
aaaaattgtagtttcttgtcatttttttccaaactgaggctgggcatgtt
cttacgacgttcttaatttttcgacgtatttcagcctaaatgttcttata
aactgggttctaataaaaaaaaaaaacgtgtatgcggATTGTTTAAAACT
TCCAGCCTGTAGAATCCATCTTTGTTTGATCCTGCCtggctggtacacaa
cgttgtttgacgtttttctattgttcacaacatccatataacgttaaaat
gaacattgaaacaacgctGTATCAGCTAGGTGAGAGAAATCTTAGAAATC
TCAATGTGctttaccgtaagttggtctaatgtcgacatcccttttctaat
tttgacacctttctttagagataggaataatatgaaggtcAGAATCGCTA
ATGGAAACTATCTGTTTTTGCTTAGCGATCATAGAAGGAAAATCCCGACC
TTCaaattattcctatctctaaaaaaCTATGATGAGTTATGAAACAGATA
CAAATTTTGAACTCCTATCAACAGAACAATGGAAGGTTTTTGTCTTCTCG
ACAGTTTAATAGAAAAGTATTATAACAAGGATTATAATAAGAGTTGActa
aattcttattttaaaCTCAGAGTTTCAAGGTGGCTCCCGGGGGTGGGGGA
GgtatttaggcaaaatgggCGTCGGGTATGTAAGGGTCCCCTTTTCACAC
CAtcgaaagtccctcaaaggggtccaaaaattattaaaaagctattgagt
ccctgtaagggttccaaaattacgaaaataaaaGATCTGCTCCCTccaag
ggtcataaattcttgaattttcgactaaaatttgaaagttttgaaggTCA
CATACTTAGTACCCGtcaaaaatagacaaaattttcgaaattcaatctct
ctaagggtcgatttttggacttttgctcggacatacccgtcatctcacAA
ACCTAGTACCTCCCGGTTTGAGTCTCAACGCCAGTGTTCAGTAAAGTAAG
ATATTTCTAGATAAACTATataatttcaacgtaagaaccctgtgatttca
aattacaaattgtcgcatcaaaataaaaaagctttaagttcatttttgtt
gttttgagaaaatctactttaaattatttttccttaaatcctgaaaaacc
attaacatttgaaaaaagttaagtccaaaaaatcgataaaaaatggGGTG
TAAAGCATCGGTATGGTTATAACTCAATTTTCCAGAAAATGGACTTAaag
ctttttattttgatgtaaAGAAATTCTCGACTTGAAATTTAGGCCAAAAG
ATTGGAGGTTTTACTCATGACAATAAAGTGTTTTTACTGCCGCCAAAAAG
GTATTCTCACATTTTTTTAGTTCGTAATTGTTATTAGGCTTTagccagat
ttcaaaagttcttataaaattgttcttgtaaACTTACGAAATTTTACTTC
ACTTTTTTAACAAACCGCAAGTGTTTAGATTGGGAAATaacaatcaaaaa
aatattatttatcaCGTTCCCTGCTGAGCATAAATTTGACAAAAGTGGGG
AAATTTCATAAccattttttcttgaaaatgattAGTATAACCAAGATGTC
ACATCACGTTTTTTCAAAGTTCTTTTAACGTTATTCGAATGTCATTCGGA
AATGAGAAAAGTTCCATTTTTTATCGCGGTTTCAATTCCTATTTTTCTAG
ATAGAAAGACAATTTTTTCTTACTCAAGTCTAAAGTTAGCCTGCGTTTTC
CTTTCGCCATGTGTTATGCTTCCCTAGTGAAGCTTGGACGCCTCATCAAT
CTTTCAACATTTTTACTTTAACAATCCTTTTCATGGGAAATAAAATCATA
GTTTTTCCAGTAGACTCATTGATTCGTATCTTTTTGCTGAGAAAAATATT
AACAATTCCATTTTTCTCAAAGAACCAGAGatcttacaaaaaaattatca
attttaattGGGGGTGACTTTTGAtggggcttttccagaaaaaacgtATA
CTCCCTGTTGAGTAGGGccatccctctgtggctggaaatgctgtaacccc
tcTGTAATACGCTCTTCTCGaaatgcataaatttattgttgtcctcgttt
tcaaacagatttcattactataaaattacatattcacaattaTAATTGTG
TCGTTTaaacctcatgagacattttgaatttcaagtacttttgttttaga
gttaatgttcgccttttgggaatttaaattggtttaaatgtataatttca
tagcaataaaatctgtttgaaaacgaggacaacaataaatttatgcatct
cgagaagagtattctgaattttagtaggatttaaaaagctacccccatgg
aattgcagttatttttgacagatttttgtatctccctatggaattccgcc
acatatcaaaccttaccacCTTGGAATGGAAATGGATCTCCTCAACAAGC
TCAGACTATTTTGATGTGATTATGAGATTCTTAACCTTCCCTAAGCGCTA
CCTCCTTTCTCATCTTATGCGATGGTAACCAATAATACCAAGGGCATTCT
ATACGCTCTATGCTCCTCAGATCACTAATTTCGGCAACTAATTCCCTTCT
TTGTTTTGTATTACAAAATGTAGTATCTTGAATGACTTATCTTAACTCTG
GTATACtataaaggttttatttttacataagtgttcccgtttcatatcag
acacataatTTATATCAGTGTCTGCCTAAtggttatattatgctgattta
agcacaaaaatgtttttcttttcctctttctaaccaatcttgctccacat
ctgtgtcaattcaatgtaaaaaagtttgtgaattaaaattgatgagtaag
caaacgatatcacccttatttaaaaacaaaacctaaaGTAATTATAATAT
TAAGTTTTGATGAAACAAATTTATCAGTTAAGAAAACATTTTCCCTGTAA
GTTTCCTTAAATAcaagtttttctttataagaactatttcaaaagaaaat
tgtcCTTGAAATCGGGTCTGAACGTAAtgataagaacaaattaagagcAA
TTTTGAGCCTAGAATTTCATATATATTCAAGAAAATACGCGCTTTTTCAG
CCTTTGTGTAAAGAAGCGTACCAATATGTAGTTAGTAAatgcccccagcg
gtttgcgtgaatggaCTTTTTCGCTTGCGTCAATGCGTGAGTTGGAAAGC
TTTGCGTggacaaaaattgcgtgaattgcgagaaaatattgcgtgaatgc
gtgaatttgggggAAAAAATGAGTGATCGTATGAATTGAAGGtctgctgg
gggggggggggctcgtaAATGTatcaataacatttttaaagaacatttta
cttgagttttttgaaaaaaatagaaaactgTTGATACTTGCTCAAAATCt
ggtttttacaaaaaagaGGATATATAGGTTGTTGACAACATTGACGTTAT
CTTCCTgatcaaggaaaagaaagaaagagatccttttgtttttgtttccc
TATTTTCGTTGTTTATAAATAATTGTTGTGATCACGAAAGATTTGTTTAG
TTTGTCCTTGCTCGTTCTACatcacaaacaaacaaagattatGTCACCTG
TAGTTTAGTGGCTTAGtttgattttaagatttcgtAGATTGATTTACTTG
GTCATCAAGTTCTCCGAAATTTCCATTTTGTGGTTGTATAATATTCttgg
tttcattttttgttattCAAGATGTCTACTGCGGTatgtttttgtttgct
ttttattttttgctgccTTATATAAGAGGACCCCCAAgaggttttcgtga
tggcgtgataggGCTTTTTTcctagcgtgattacgtgatttggaatttta
tttttcgtgattgcgtgatcaaaGGTCAAAATATGATCgtgatttaaaag
atttttgagccgtgatgcgtgatttggactttttcaaagagaTGCGtgat
tatcaaatttttttgctgatttccgtgatcgtgattgaagtcaaaaaatt
gcgtgatatcgtgatcagagttaccgctgaGGGGAGGGGGCTCATAAAAA
TGTGCTGTTTTAACCTTTGTGTGTGCAGTCTGACCTTTGTCGGCTGTCAT
TTGTCGGCTGTATGTTTCTTGAGGAGCTTATCTTTTGGTATGTTGATTAA
AAATCCAGGTAAATCATAAAGATTGTTTTGGGCTGTACCCGATTAACAag
catttgtaaaattttttagTTGTTTAATTAATCTCTGATTACTCTTTCAT
CGACTGTTTTACTTgctattattatttttcttcgtGCGAAAGTTTTGTCT
GGTGTCCTCGTTAGACTTTTcgttcttaaaaaatatttcacataTCAAAG
CAGCTTTTTTTTCCATAGATACATACAAAAATGTTGAATGAAGAACAGAA
CTTTGAGGCGTTTCAAGTATTTCACTGAACAAAATTAAACTTCCCAGAAC
AGGCTAGTTCAGTAGCGACCCagcaatgtcaattgaatatcGTTCTTTAT
TCTATTGACTATGGAGCCAGTGCTGGCTTTATCTTAGGTTTCCTCCTTTA
ATGCTAATCAATCTAATCGAAATTCTGTGAAAAGTCTTTGAATCCGTGGA
taacatttttgagatttaatcAAATTAGAATCGATCTCAATCGCTAAAAG
TCTGTAGATTTTTATCAATAACATCATTTCCATTCTTTTGCTAATGACTG
TTGCAcccgtttttttataagaacatcccaaacttttgaagcctgctgat
tttcttaactttctgagttcaaagcctaaaaattttcttaacatgttcta
gactggcacgccagtcgggctggaacggtatcacgcgggaaaagtgagcg
taggagttaggtaagcgtaggaagaaattttgtcggcggcgagGGNNNNN
NNNNNNNNNNNNNNNNNNNgttaatcagcagcctctcaccaacttttgct
cgctctcctacgcagctcctattctagcaaacgcccgccacctttatgtt
cccgccctctgacatgataaATTAACAGACTAGTATGCTAGtctaaacat
gttcttaatttcacaattttgtgagtattttgtgCAATCTTCTATGAAAT
TGGTTGTTTTAGATTCTGCAAAGAAAAGTTTGTTTTcctatataatttgt
tcttaaaaaaatgtgtacttaTAAAGAGACTGATTGCATTTAAATAATCA
AACAGTACTATTTTAGTCCAGCCTTTGGTGTTCGTGTTCTGTACTTGTGT
ATTAAACTGGGTTAAATCTCAAGAAATTTTCACCTTATTCGGGTAGGAAC
ACTATAGCTGGTACTGACAAGTCTTACAAATAttgatatttgaaattttt
gacctAACACTTTATGAAACCAAAAgtttttagattatttttgaaatgtt
tttaaccaaaaatagTATTTCGTGCATATTACTTTCGGCAAATGCACAAT
TTTACACAGATCTTTCTTTCTGTATCGTTTCAGGGGCCACAAAGAAGAAG
ATCTAGCGTTGGGATAGCTATGGATTCATTGAAAATCGCTGCTAATAAAG
TCAAGAAAAGCCCTAAAGCTTTGAAATGTAAAATTGATAATGCTCTCAAC
AAGGATAGTAAGTgatcctttgtattttttttggtctttttcctgtcaag
aaaaatttcctgaaatttcaaatttgtgttcctcgtgcgttttcgagtta
tgaagaccaCACTGTAAAAATCTTCTTGTTTTATCACCGCTAGTCAGAAG
ATTCTCACTGCTACCGGGTCGTTGAGACAGGGTTGTTAGAGAATCTCCAT
TCGTTGGTTTTCAGTAGCAGACTATATTCAGGTCTGTTTCATTTCTTAGT
ACAGTGGTTGAATAACTATCGGATATCGAACATTGTCGGgtcaaaaatca
taaatttcaagCAAAAGCAACCTTGTCCGGTCATTTTGACCGccccactt
gaaatcgttatcTTCAGCCAAGGTAGAGGTACCTTCGAATTTCTTCTAGC
TGTTCGCAACATTCTTAACAAGTCTCGGTATTATCTTAACCTAATCATCA
TTATTGTTTTTCAGAATTGACAGACAACTGGATTCACAACcgtgaaaatg
ttcaaaatggcGTCGTTTTTAATATGAAGGTATTTATGGAATTCTTtgtt
ttcgatttttctttaATTCTTATATCAGTTACATTATATGAAAAGGAAAT
CTTTGTGAAAGTATCACTATAGTAGTGAAATGTTTTCGGAAAGCAATTGG
AAATCTCTTTTCAATTCTGATTTCATTTCTTTCGAATCTGTTTTTCCTCT
TACTCCGAATGACATATAATAAATTCCAATATGATTTACTCCAAGGTCAT
ATATAATAATTTAAAGCCAGGCCAATGCTATGCTATGCCTAACCTAGCCA
GGTATACATCAATGATTTCCCACTGAACTGTTAGCGCAAGCTAGAATTAg
aactagagtctacttctgactaGAATTTGCTTTCAGATGATTTTTAATTG
AGTCCAGAGATCCACCAATAAgtgccatccagtctatcataAAATCATAA
GTGGCCATCAAGCTAGCTATACCCTAGCCTCATAGGTGAAATAATTTCCA
AAGAAATAGGCATTTTTTCTCCACCCATAGGTGTTGGGCAAAAAAGTGGC
GACAACGGCACAAGGGAAAGGATGTACAGATGACGCAGTCAAAGAAATGG
TCCAACAACATAAAGTGGTAAGAATTGTGTAGCTGTGGTGTTCTTCAGTG
GGCGGTGATGTGATAGGGCGGAGAAGGTTATTTATAATAAGATGGGTGGA
TGTCTAaacttttgacgtcaaaaatgttttgaaacgaATGTTCTGAACAC
AATGAGCGTACAATAGACGATGTGGACAACAGATCCTTTTCATTTACCAC
CTGACTTCTGTCGCCCAGTTTTCTTTGGGTTAtcctttttttataatttt
ttttttagaccCCATATATTATGATATTGCTAAATGTTTTGAAGCTTAGT
CAACAGAGTAAAAAAAGCATATTTTCCACATACCAGACTTACAGTATAAT
TTGGTATCGCGATAATGAAAGAcgataagaaaaaaaacttcatttcctta
aaaggaaaaattaagTTCAGTCACATGTTGTTATTTCAAAGGAAGGAAAA
ACTTAATGAGCATCTAATGACTGATAATTGGGAAAGAGCATTTTCATCCT
GATGCATCATGCGAAGGGAGGGAAATGCGTCATTTAAATATACAGTATCC
TTTTTACATTAATTTCGGTGCCTCATCTCTGTTTTCGTTCCTTCATACAA
CAGCTTGTTAATTAGTCattaaaatgactagtaattaATCAATCCCTCTA
TAAATGGGTTCTCATAACAGATGTTAATTAGTTTTTTATATGTATCGAAC
TTCCTCTTACAAGTATTTGAAGTGCGCAGAAGGAATACCCAAAAAAATCc
gtaaaacaaaaataaaaaaaactgtcaCTTTTATATGAAGGTACAATAGT
CAATTACTGTCCCTGAACCCAGATTCTCTTTTGagatttaaatatttctt
tttttttcttacagAAAGGCAAAACGGAGAAACTATTGAAAGTTTCAATG
AGGGTGGATAGCAAGAAAATGATAATTCGAGATCTTGTTACACACGtatg
tttcttcttttcatttcatttcattaaaatattttgattttttttaaacc
ccCGGTTTGCTTTTACGTATTGTGGTCTGATCTGATAAACATTGTCATAG
TCGTCGTCTCGTCGTGAACCAAAAAATGGTCTTGATTCATCACTGTCAGG
GGAGATAAAATCAGCTAACAGGCTTTTGTTACCACTCTGCACAAATTGAT
GGAAGGTAATTTTAGTCAGGGAAAGTTTTAGTCacattttagtcattttt
cccGATACACAAATTCCTACCGATTGTATTCTTACCACGTCCAGCCCTTT
AATGGGAGTTATTATTGCTTTATTTTAATATGTTATTGTTTTTTGTAGGA
ATTACTCGAAGATGTTCCAGTCAATAGAATCTCCTATTGTACAGCTGATC
CGAATTTCCCAAAAGTCTTTGCGTTGATTGCACGAGAACGAGGTTCCAAA
ACACTTTTCACGCATGCCTTCTTAACGAACAAGAAAGAAATGGTAAGTAA
ATTAGCCGAACTTAAGTTTCATCATCTCTAATTTCAGACAAAGATCTTAT
CACTACTTCCATTAGCTTgcatacagtcaactctctctaattcgaatttc
tattattcgaatctctctctaattcgaactataCTGTTTGTGCCCTCAGT
TAAGAAAtagtataaaatactttttctaattcgaagaaaattcctggtcc
cttgaagatcgaattagaggaGGTAACTGTATTATAGGCTTGTAAACAAA
GCCTCTTGTAGCACTGTTTGTAATATATAACAAACAATAACGGAAAGGGC
AAACATGAACGTATAGATAGGTGCTTCGAGAAAAATGACGACAGTGTTGT
TTCCGAATGCAGTTGGTGAAGACGCGTGTTGGCCTGGGAATCTGAGATGA
CAAATCTAGGTTACAAAAGTAGATCTACTGCTCCATCAATCTAGAGAAAA
CAGTGTCCCCTTGATAGTCATTTCGGTACGATTGCAAAAAAGATTGCATA
TTATCGTGAACATATTTCAACCAACCTTGTAACCTTTGTGTTCAGGCTGA
AGCAATCGCATTAACAGTGGCTCAAGCGTTCACAATGGCTTACGAGGAAT
GGGATGAAAAATCGAAAGAAAGACAACGCGAAGTTGAAGATGAACAAGCA
TCTGATGCGCTAGAATTATATAAAGATCTAGCGTCGGAATCACCGAAACC
CGATTCTAATCCATTCAAGAAGGAAGACCAAGAAGatgatttcaatttca
tttcaagttCACTGGCACCAAGAGTTCAAACCATCGTAAGttgtttttca
actttttttacgCTTCGCTAATTTAATATATCCCTGTCTCTTAGCAGTGA
ATGTTGGAAAACCAATAGGCTATTTCACAATCGAAATGGATTATGGGTAA
TCAgtactgattgcgcctccataacggcttcccgttggctagactcaaaa
aatcttcaaaaattttcaaaactttggaccaataggaaatcgtcattagc
gcgcagtgtTCCTGAtcacccattacgctttgcgcctgtgaaatggccta
tggaATATCTGAAACTcagtttcttttaaattcgagTAGGTAGGAAGACC
AAAATGTCGTTGAATTTCATAGAAATGAGTAGTTCGGCATACTAGACAAC
TAATATAGACGTATTATCGCATATCGATTGTTTTATGATGGATTATAAAC
TTATATACTTATAGACTTCATGATATGAGATATTTCAGAAGAAAACAGAC
TTGACTCGAATTCTGCTTTTTTCCACTAACATTGAGTTCTTTTTCATCAT
TAGGAGATAGTGGAACCATTGGATAACGAAACACATTCAGATGGTGCTTC
ATCGGACGATGATGAATTCTCAAGGTCAGTAACAGCAAAAGAAACCTTCC
TCTTTTCGCACCGGACACATTTGCGCCCGGTCTCAAGAGTTCCCGTAATG
TAACACCGGACAGTTGTTTCTGTCGTAACTTGATAATACTTTTTGGCACA
GGACAGTCCGGAGCGTCGACAGGGTCATTTGGGTCAAATAAGGATTTTAA
TTACAGAGTGATCGACTTCAATTTAACAGTGAAATACTAATTTATACGTC
CGTAAATTTAAACAGACCTGATATCtacggaaatttcaaaattcattgcc
gtactaGGCTACAAGTTATACGGTAAATAGACTTTGGTACTAAATTGTTG
GAGTGTCTTGAGACTCGAACTAATTTTTGAATCGCTAGTGAACATAGATA
TAACCGTGCCAGAAATTCATTTAGAAGTACAAAGTGCATAGCTGTGACTT
TGAGACGATGGTGTCTTTCCtatacttaaccaattttgtgaaaaagcaAC
TCCAAGAATTGTTCTATTCCATTCGTATATTATAAACTttgtacagtatg
tggcccccaaaacggcgatcaaatttgaaatttctctcaaatctagagga
aaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002609XLOC_002609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004629-exon-sc0000047-1491911889:391726..391820TCONS_00004629-exon-sc0000047-1491911889:391726..391820Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:391726..391820TCONS_00004629-exon-sc0000047-1510915933:391726..391820Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:391726..391820TCONS_00004629-exon-sc0000047-1575043694:391726..391820Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1491911889:403359..403482TCONS_00004629-exon-sc0000047-1491911889:403359..403482Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:403359..403482TCONS_00004629-exon-sc0000047-1510915933:403359..403482Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:403359..403482TCONS_00004629-exon-sc0000047-1575043694:403359..403482Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1491911889:403940..404004TCONS_00004629-exon-sc0000047-1491911889:403940..404004Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:403940..404004TCONS_00004629-exon-sc0000047-1510915933:403940..404004Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:403940..404004TCONS_00004629-exon-sc0000047-1575043694:403940..404004Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1491911889:404506..404592TCONS_00004629-exon-sc0000047-1491911889:404506..404592Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:404506..404592TCONS_00004629-exon-sc0000047-1510915933:404506..404592Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:404506..404592TCONS_00004629-exon-sc0000047-1575043694:404506..404592Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1491911889:405440..405520TCONS_00004629-exon-sc0000047-1491911889:405440..405520Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:405440..405520TCONS_00004629-exon-sc0000047-1510915933:405440..405520Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:405440..405520TCONS_00004629-exon-sc0000047-1575043694:405440..405520Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1491911889:405874..406017TCONS_00004629-exon-sc0000047-1491911889:405874..406017Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:405874..406017TCONS_00004629-exon-sc0000047-1510915933:405874..406017Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:405874..406017TCONS_00004629-exon-sc0000047-1575043694:405874..406017Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1491911889:406571..406810TCONS_00004629-exon-sc0000047-1491911889:406571..406810Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:406571..406810TCONS_00004629-exon-sc0000047-1510915933:406571..406810Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:406571..406810TCONS_00004629-exon-sc0000047-1575043694:406571..406810Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1491911889:407329..407979TCONS_00004629-exon-sc0000047-1491911889:407329..407979Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1510915933:407329..407979TCONS_00004629-exon-sc0000047-1510915933:407329..407979Clytia hemisphaericaexon
TCONS_00004629-exon-sc0000047-1575043694:407329..407979TCONS_00004629-exon-sc0000047-1575043694:407329..407979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:391726..407979 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.649262	4.2097	2.90183	2.01856	2.1518	0.75804	16.1553	4.47424	0	0.650662	0	0	4.8522	0.994563	6.27565	4.66974	0	0	0	0	1.31475	0.955731	1.267e-06	2.70021	1.07779	0.00228993	0	0	0	4.81605e-09
Blast
[Close]
BLAST of TCONS_00004629 vs. Swiss-Prot (Human)
Match: ARH (Low density lipoprotein receptor adapter protein 1 OS=Homo sapiens GN=LDLRAP1 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.335e-36
Identity = 75/200 (37.50%), Postives = 120/200 (60.00%), Query Frame = 3 
Query:  132 MDSLKIAANKVKKSPKALKCKIDNALNKDKLTDNWIHNRENVQNGVVFNMKVLGKKVATTAQGKGCTDDAVKEMVQQHKVKGKTEKLLKVSMRVDSKKMIIRDLVTHELLEDVPVNRISYCTADPNFPKVFALIARERGSKTLFTHAFLTNKKEMAEAIALTVAQAFTMAYEEWDEKSKERQ-REVEDEQASDALELYKD 728
            MD+LK A   + +SP   K          KL +NW   RE +  G++F++K LG  +    +G+  +  A+K +V   K  GK  KL KV+++V  + +I+ D +T++L+E+V + RISYCTAD    KVFA IA+ + +++L  HAFL  K++MA+A+ LTVAQAF +A+E W    +E++ R+   ++  D L   +D
Sbjct:    1 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGK--KLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKEKRDKASQEGGDVLGARQD 198
The following BLAST results are available for this feature:
BLAST of TCONS_00004629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARH1.335e-3637.50Low density lipoprotein receptor adapter protein 1... [more]
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