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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004619 ID=TCONS_00004619|Name=TCONS_00004619|organism=Clytia hemisphaerica|type=transcript|length=496bp
CATATATCTACCTAAAAGTGAGTGTAATCCAAGTATATAAAGAGGAAATA
CATTTTTAAAGGGAAATGTCCTTTTCAGCTAGAATTAGTCCCTAAAATAG
ATTCTTCAAAATCAATGTTGAAATGGAATCAGAAGAGGATATTGATTTCA
ATCAAAATGTTCTTGATCTGTGTGGAAATTGTCATGAAAAATGTGAAATG
AAATGTGGCAATTGTAATGTAACCAGTTATTGTTCAAGATTATGTCAAAA
ACTTGATTGGAAGTATCACCAACGTTTCATGGGATGTACAAGCACCAAAA
AGACTTCAAATGAAGGGGCAGCCTCATCAAGTGAACAATCCAACCAATAC
CCGATTCTTTTAAATGAAAGGAATAAGATTAAATATGGTGAATTGTTGAA
TGCACAGGTTGCACTTACGCATGCTTTTCTTGGAGCAGATTTGGTATACC
AGGCTGATGATGACCACATAGAAATGTTGATGGAGCAACGTCATAA Run BLAST on NCBI protein sequence of TCONS_00004619-protein >TCONS_00004619-protein ID=TCONS_00004619-protein|Name=TCONS_00004619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MESEEDIDFNQNVLDLCGNCHEKCEMKCGNCNVTSYCSRLCQKLDWKYHQ
RFMGCTSTKKTSNEGAASSSEQSNQYPILLNERNKIKYGELLNAQVALTH
AFLGADLVYQADDDHIEMLMEQRH Run BLAST on NCBI transcript from alignment at sc0000047:350598..352990+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004619 ID=TCONS_00004619|Name=TCONS_00004619|organism=Clytia hemisphaerica|type=transcript|length=2393bp|location=Sequence derived from alignment at sc0000047:350598..352990+ (Clytia hemisphaerica)
CATATATCTACCTAAAAGTGAGTGTAATCCAAGTGAGTTATCTTTCTTTT
GAAGTTGTTCATACTTGCTGTTGAGGTCTAATTAATAATTTGACACCTGT
TTGACATACAGTTTTTTATAGAAACTTAGTGCTTAGTGCTTAGTATGTCA
ATCTAGGGATGTAGAcccaactgggcagggtaccagtatggatttcgtgt
aactaacgccgaagttcttcggcgtacaactgaaacgtttttggcgcatt
ggcataagggtacttacaaagattgttttgattttcagttggcgtatagt
aataattccagctcggcgtgaatgactccataatccatcgatttttagct
tccatttggctaaatttgctttcgctcGCTTGCGCTTgtgtcaatttatt
aattatgttggcgcatgcgcctcttttcccatattgcacccttattgaaa
aattgaatgttggtacaaaagaaattttgcttggcgtgaggcttgctgca
cggaaaaatatcttcggcgcaagatttcgtggaatccatactgggAGGGT
ACTCTAGCAACGGGTCAAAACCAGTTTGAATATAAATTTGAAGGGGCCAT
TTTGAGAGGggtgttctttaaaaattttttttcaaaggacGGGCATAAAT
ATTCAAGCAGGTTATTTGAAAGAAgaggaaaaaaagaaatcttagATAGG
TCCAAAATGTTTAAACTCAATACACTTTTGGAACTATTCCTAAAAAAAAG
TGACCTTGTGACGAAATATTTCtttccagacccgatcaatcgaacttgtc
ataccaatcgaacaatcgaactccatcgaaagcttaaagttcgattaaaa
aaattaatcgaacactaagattttttaaaagattgtgagtgttcgattaa
gttcaatCAATGGctttcggttcgatcagttcgataaaccaattttgttc
gacaaatttgtgctgctccgccaccgtatattagcttcttttcaaagcca
atttcagaatgtaaatcgggaaattacctCAGACAACagattacacacat
ttcctgtatccttttagcgccagaggcggtttgttggggcgtagtattcc
gccacttGGCCGCGCACGAAAttgcaacagaggggctacggactttatcc
cggatagacaaatatccgggtacaataaacgtcaagctgttaagtccggg
aactgtcgaaatggcaatcgcgtggccaggacaaagtttttgcaagcgag
ggaagatatgaggatttttaatatcattgaactaatcgaactttttactg
accaaactaatcgaactgctattgcttcaaaaattgtgagtgttcgatta
ggttcgattaatttttttaatcgaactttaatcgttcgatggagtttgat
tagttcgattgttcgattggttcgacgagctcgattgatcgggtctggtt
cTTTCCATCCTCATAAAAACAACAGATACCCCCCTTTCGCCCTGACTTGC
ACTGGTGTTAATTGTAAGCCCCAAGACTTGAAACCACTTTTTTTGTACAG
GTATATAAAGAGGAAATACATTTTTAAAGGGAAATGTCCTTTTCAGCTAG
AATTAGTCCCTAAAATAGATTCTTCAAAATCAATGTTGAAATGGAATCAG
AAGAGGATATTGATTTCAATCAAAATGTTCTTGATCTGTGTGGAAATTGT
CATGAAAAATGTGAAATGAAATGTGGCAATTGTAATGTAACCAGTTATTG
TTCAAGATTATGTCAAAAACTTGATTGGAAGTATCACCAACGTTTCATGG
GATGTACAAGCACCAAAAAGACTTCAAATGAAGGGGCAGCCTCATCAAGT
GAACAATCCAACCAATACCCGATTCTTTTAAATGAAAGGAATAAGATTAA
ATATGGTGAATTGTTGAATGCACAGGTTGCACTTACGCATGCTTTTCTTG
GAGCAGGTAAATATTCTGTATAACATTCTTCTATCATTGGTAATTAGCGT
AATTTTCTATCATATTAAAGAGCTTTCACAATTCTTTGTGAAGCCAACGC
TTTTTGCTGCTTTGGAAATTGCCAAAATGTTTGGATAGCCCCTCCTGCTC
AAAGAAAGGAAACCTAAGCCTGCGTCTACATATTTGTTCTGGTTTTGGAA
ATTGTCCTTTGTCTTTAACCATTTTTCACTTTGCTGATTTCAGGCCTggg
tttttcaagatttttgtcctctcaaaattttttaccGGAAATACTCTGCA
TACTTTTATTCATTATCTACttcaaaatcattgaaaatcttATAAGAGAC
ATCCAATAACTGGTTTTACATCCTATGCTTTGCAGATTTGGTATACCAGG
CTGATGATGACCACATAGAAATGTTGATGGAGCAACGTCATAA Coding sequence (CDS) from alignment at sc0000047:350598..352990+ >TCONS_00004619 ID=TCONS_00004619|Name=TCONS_00004619|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000047:350598..352990+ (Clytia hemisphaerica)
ATGGAATCAGAAGAGGATATTGATTTCAATCAAAATGTTCTTGATCTGTG
TGGAAATTGTCATGAAAAATGTGAAATGAAATGTGGCAATTGTAATGTAA
CCAGTTATTGTTCAAGATTATGTCAAAAACTTGATTGGAAGTATCACCAA
CGTTTCATGGGATGTACAAGCACCAAAAAGACTTCAAATGAAGGGGCAGC
CTCATCAAGTGAACAATCCAACCAATACCCGATTCTTTTAAATGAAAGGA
ATAAGATTAAATATGGTGAATTGTTGAATGCACAGGTTGCACTTACGCAT
GCTTTTCTTGGAGCAGATTTGGTATACCAGGCTGATGATGACCACATAGA
AATGTTGATGGAGCAACGTCATATGGAATCAGAAGAGGATATTGATTTCA
ATCAAAATGTTCTTGATCTGTGTGGAAATTGTCATGAAAAATGTGAAATG
AAATGTGGCAATTGTAATGTAACCAGTTATTGTTCAAGATTATGTCAAAA
ACTTGATTGGAAGTATCACCAACGTTTCATGGGATGTACAAGCACCAAAA
AGACTTCAAATGAAGGGGCAGCCTCATCAAGTGAACAATCCAACCAATAC
CCGATTCTTTTAAATGAAAGGAATAAGATTAAATATGGTGAATTGTTGAA
TGCACAGGTTGCACTTACGCATGCTTTTCTTGGAGCAGATTTGGTATACC
AGGCTGATGATGACCACATAGAAATGTTGATGGAGCAACGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004619-exon-sc0000047-1491911889:350598..350629 | TCONS_00004619-exon-sc0000047-1491911889:350598..350629 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1510915933:350598..350629 | TCONS_00004619-exon-sc0000047-1510915933:350598..350629 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1575043694:350598..350629 | TCONS_00004619-exon-sc0000047-1575043694:350598..350629 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1491911889:352148..352553 | TCONS_00004619-exon-sc0000047-1491911889:352148..352553 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1510915933:352148..352553 | TCONS_00004619-exon-sc0000047-1510915933:352148..352553 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1575043694:352148..352553 | TCONS_00004619-exon-sc0000047-1575043694:352148..352553 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1491911889:352933..352990 | TCONS_00004619-exon-sc0000047-1491911889:352933..352990 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1510915933:352933..352990 | TCONS_00004619-exon-sc0000047-1510915933:352933..352990 | Clytia hemisphaerica | exon |
| TCONS_00004619-exon-sc0000047-1575043694:352933..352990 | TCONS_00004619-exon-sc0000047-1575043694:352933..352990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000047 | supercontig | sc0000047:350598..352990 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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