TCONS_00004615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004615
Unique NameTCONS_00004615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1161

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004615 ID=TCONS_00004615|Name=TCONS_00004615|organism=Clytia hemisphaerica|type=transcript|length=1161bp
CAAAAATAAGCCACTGTCGGGTCCCTCTTGTCGTATTCTTTTGCCAGTTT
TAGATAAgaatttatttgtttcaaaGTTGGAGGTAGCGCCGCCGCCATAT
TGAATCttcgaaaagtaaaaaaatgcttGCGTAAGCTAATTTACATTAAT
TACGTCATCGGTTCATCGTTGTCACTAACAACAGGCCCAAATTACAGAAA
CAGAAAAACGAAGAAGgaaacaaacaacaacaaatcacTTATGAAAATTT
TAGTGGCCGGGTGGACTGGGAAAATTGTTGGGTCAGTTTTAGACTAGGAG
ACCCTGTAAAGGTAGAAAAGTGTTTTAATTATGGCTGCTGTTTGTCAGCT
TTCAACGGCATGCTCATACGAGAGCAAACCCCTTTTTGCACAGGGCTTTA
CAACCAAATCATGGATGAAAAATGTTGAGgttGTTGGGCCACCCGAAGCT
GGAGCATTCAAAAAACGACCCGCAAAACAAACGCAATTCCGTAGATTCTA
TGATCGCGGTGATCTTCCAATCGCTTTAGAACATGATACCAAGGGCAATA
AAATCGCCTGGAAAGTGGAAATCGAGAAATTAGATTACCATCACTATCTC
CCAATGTTTTTCGAAGGTCTCCGTGAAACTGAACATCCATATGAATTTTT
TGCACGCCAAGGAGTTCATGATATGTTAGAACACGGCGGAAGTAAAATCT
TACCTGTCGTCCCACAACTTATTTTACCAATCCGTGATGCGTTGGATACG
CGCGATTTACAGGTCGTGTGTACCACGTTGAAGGTACTCCAACATTTGGT
CATCTCTGGTGAAATGGTCGGAGAGGCCTTAGTACCTTATTATAGACAGA
TTCTACCagtgttaaatattttcaaaagtaaaaatttgaattctgGTGAC
GGTATTGATTATAGTCAACAACGCCGTGAAAATATTGGTGATTTGATTCA
AGAAACACTTGAAGCTTTTGAAAGACACGGTGGCGAGGACGCTTTTATCA
ATATCAAATACATGATTCCAACTTATGAGTCATGCCTACTGaactaaaat
tttaaagaaagcaAGGTtcctaaattatttttttattatcagaaatttct
aaattatGAAGGGTTCAAGGTTACTTTGAAttgtatattatatttttata
ttctaTTTCAC
Run BLAST on NCBI

protein sequence of TCONS_00004615-protein

>TCONS_00004615-protein ID=TCONS_00004615-protein|Name=TCONS_00004615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MAAVCQLSTACSYESKPLFAQGFTTKSWMKNVEVVGPPEAGAFKKRPAKQ
TQFRRFYDRGDLPIALEHDTKGNKIAWKVEIEKLDYHHYLPMFFEGLRET
EHPYEFFARQGVHDMLEHGGSKILPVVPQLILPIRDALDTRDLQVVCTTL
KVLQHLVISGEMVGEALVPYYRQILPVLNIFKSKNLNSGDGIDYSQQRRE
NIGDLIQETLEAFERHGGEDAFINIKYMIPTYESCLLN
Run BLAST on NCBI

transcript from alignment at sc0000047:72582..77241+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004615 ID=TCONS_00004615|Name=TCONS_00004615|organism=Clytia hemisphaerica|type=transcript|length=4660bp|location=Sequence derived from alignment at sc0000047:72582..77241+ (Clytia hemisphaerica)
CAAAAATAAGCCACTGTCGGGTCCCTCTTGTCGTATTCTTTTGCCAGTTT
TAGATAAgaatttatttgtttcaaaGTTGGAGGTAGCGCCGCCGCCATAT
TGAATCttcgaaaagtaaaaaaatgcttGCGTAAGCTAATTTACATTAAT
TACGTCATCGGTTCATCGTTGTCACTAACAACAGGCCCAAATTACAGAAA
CAGAAAAACGAAGAAGgaaacaaacaacaacaaatcacTTATGAAAATTT
TAGTGGCCGGGTGGACTGGGAAAATTGTTGGGTCAGTTTTAGACTAGGAG
ACCCTGTAAAGGTAGAAAAGTGTTTTAATTATGGCTGCTGTTTGTCAGCT
TTCAACGGCATGCTCATACGAGAGCAAACCCCTTTTTGCACAGGGCTTTA
CAACCAAATCATGGATGAAAAATGTTGAGGTAAGAATAAAGCTACTTACA
CTTATGCATGAACTGGGATCATAATGTAGATATCCTTTCATTCGACAAGT
TATTGGTAGACAAAAACTGTGGAGGTGCGGGGGATCGAACCCCGggcctc
tcgcatgcaaagcgagcgctctaccactgagctacaCCCCCGGCTATTGT
TTTAAGGTACTAAGTAGATAGGAATCCTTAACATACTATTGGCAAATTGA
AGCTACGATAATATTACTATTTGATGCCAATTCTGAAATTATGACCGATT
TTTTGCTTAATTCAGATTTTCTAGACAAGAAAGCCTAATTTTACGTCTCC
GACAAAACGGGGACAGAACACAGGAACACATAAATTAACTACAATTTAAC
AATTTAGTTCAAATTTTCGtatactagggttgcgagctgacggggggtgc
cgcccaACTTTcaaccctcggacccttacctaggctgctggcatccacta
acggattcgtgctccaggcacgacggaagctttttatatctggtacggcg
aatgaggaaatttaagcgattttataccgatttgaccgacgaagaggaaa
acttcgggtatttttgtgaaaatctggtacNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNccgcaaacccagtgcccccccccccgggggtctg
cgattcagactaacccttaccgggactaaaaaggagaaaacaaaggaaaa
ttttgtgaattttacgacccttacaggtacaaatttgaccaaatttcgat
ctttctgggggtaaaaagttgaaatttttcaatttttcctacCCTTACTT
AGtcggactgaaatttgattttctgaatttcccgacccttagcgggactt
tggaaatccaaaaaaggtacccttaggcagtggcggcctggcagggggtg
cagggtgtgcagtgcaccacccagaaagatctgaaaggggcgccaaaaga
gcttttcaagggggcgccaaaatttaattgatgtttaattgggcgACTTG
GCGCCCTTCGACAAGTTTGTAACGCCTTCCATAAgtgcaatgttaatttt
ttcgcctgcggcgcttcgttttattttacgctCTTGCATCCTTATTCTCT
TGACTTTGTTAAAAACTACTCTCAACATTGAATCgcaaaaaagtcaaagc
aaAAGAAGTGTTGTGAATCCACTAGGGGCTAAAGAGGATCCTCAccttca
aaatgagagattgccaaaaaaTCGAAACTTGATAATGCTcactgtggttt
ttgtggtcttatgctgactaactttctcctttttagaagatcttttaagc
tgtttgacgtttcttacatcaaaattttttgcctgcggcgccaacATTCC
AAATacccttattcctgccaactttcaaaatttggggcccttttttagcc
atttttctttaatggagagtaaagtaagaccagcggCGCAAAAGTTTTAA
GGTTATCAGGTCATTTTTCTGATgaagttttagaaaacaaaaatatagac
CAAATCGCCTTGCTAGTCGACTCGCTACctttaaaatttccatttcaagt
atcaacagctcatgttttttatttgaagagcTTTCTTTTTGGTGTTAAAT
CGGTATAAGATAAATTGAggcatttttagacattttaaaagttgaaaata
ggaaaaattttccttgttcAGAAAACTATGACATTTAAAAttataacaag
gaaatagatatcaagttatGATTACCACAACCTTCGTAtgaataaaagtt
tttaaactCAAAGATTCTGGGCGCTACTTTCagccagtcactgctcttac
agtttaatatttccacttaataatggagggcgcaagtaaggacaaaagta
ccaggggcgccaatttcatagcttgcaccaccaagaaaattgaGCTAGGC
CGCTACTGTACAccaatttttcgagtgatttgcccctcgacCCTGGACGT
CACAACTCCTCACTATAGGAGGATACAGAttatttctggaagagcccaat
ggaAGCTTCTTGGTTATATTCTaaaaagaattataaatttgTTCTAAAAC
TTACTAATTTCATGCAGGCTTGGATTCGCTACATCTGGTTGATGAACGAA
AAATGATCGAAGTTCGAAGTTCTTCACAAAGACCATCAAGTGATCTGGAA
ACAGATGATTCGATTNTTAGCTTTTATAGTATCTTTGcagtaagggtacg
attttgaaaagcagattttgcgcggcacataccgtcgtttctaAATCGAG
TGCCCTCTTGACATTTTTGAGACCTTTTGAGAGAGTAACctatgaatttg
tacccctttgactTTTGAGTTATGAAAAAAAGGGTAACCTTTATGGCTTG
CACATACCCGTCTGCACTGCCTATATAAAGTCTCCCTCCCCGAGCAaaaa
tttggagtaattttttttattttcaaaattttctttatgCGACGTCGTCA
ATATATTTTCCCGAGTTTTTCTAGAGATCTTAataaaatctccaaaattt
tcacagttccaaaaattttgatttttaggttGTTGGGCCACCCGAAGCTG
GAGCATTCAAAAAACGACCCGCAAAACAAACGCAATTCCGTAGATTCTAT
GATCGCGGTGATCTTCCAATCGCTTTAGAACATGATACCAAGGGCAATAA
AATCGCCTGGAAAGTGGAAATCGAGAAATTAGATTACCATCACTATCTCC
CAATGTTTTTCGAAGGTCTCCGTGAAACTGAACATCCATATGAATTTTTT
GCACGCCAAGGAGTTCATGATATGTTAGAACACGGCGGAAGTAAAATCTT
ACCTGTCGTCCCACAACTTATTTTACCAATCCGTGATGCGTTGGATACGC
GCGATTTACAGGTCGTGTGTACCACGTTGAAGGTACTCCAACATTTGGTC
ATCTCTGGTGAAATGGTCGGAGAGGCCTTAGTACCTTATTATAGACAGAT
TCTACCagtgttaaatattttcaaaagtaaaaatttgaattctgGTGACG
GTATTGATTATAGTCAACAACGCCGTGAAAATATTGGTGATTTGATTCAA
GAAACACTTGAAGCTTTTGAAAGACACGGTGGCGAGGACGCTTTTATCAA
TATCAAATACATGATTCCAACTTATGAGTCATGCCTACTGaactaaaatt
ttaaagaaagcaAGGTtcctaaattatttttttattatcagaaatttcta
aattatGAAGGGTTCAAGGTTACTTTGAAttgtatattatatttttatat
tctaTTTCAC

Coding sequence (CDS) from alignment at sc0000047:72582..77241+

>TCONS_00004615 ID=TCONS_00004615|Name=TCONS_00004615|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at sc0000047:72582..77241+ (Clytia hemisphaerica)
ATGGCTGCTGTTTGTCAGCTTTCAACGGCATGCTCATACGAGAGCAAACC
CCTTTTTGCACAGGGCTTTACAACCAAATCATGGATGAAAAATGTTGAGg
ttGTTGGGCCACCCGAAGCTGGAGCATTCAAAAAACGACCCGCAAAACAA
ACGCAATTCCGTAGATTCTATGATCGCGGTGATCTTCCAATCGCTTTAGA
ACATGATACCAAGGGCAATAAAATCGCCTGGAAAGTGGAAATCGAGAAAT
TAGATTACCATCACTATCTCCCAATGTTTTTCGAAGGTCTCCGTGAAACT
GAACATCCATATGAATTTTTTGCACGCCAAGGAGTTCATGATATGTTAGA
ACACGGCGGAAGTAAAATCTTACCTGTCGTCCCACAACTTATTTTACCAA
TCCGTGATGCGTTGGATACGCGCGATTTACAGGTCGTGTGTACCACGTTG
AAGGTACTCCAACATTTGGTCATCTCTGGTGAAATGGTCGGAGAGGCCTT
AGTACCTTATTATAGACAGATTCTACCagtgttaaatattttcaaaagta
aaaatttgaattctgGTGACGGTATTGATTATAGTCAACAACGCCGTGAA
AATATTGGTGATTTGATTCAAGAAACACTTGAAGCTTTTGAAAGACACGG
TGGCGAGGACGCTTTTATCAATATCAAATACATGATTCCAACTTATGAGT
CATGCCTACTGaactaaATGGCTGCTGTTTGTCAGCTTTCAACGGCATGC
TCATACGAGAGCAAACCCCTTTTTGCACAGGGCTTTACAACCAAATCATG
GATGAAAAATGTTGAGgttGTTGGGCCACCCGAAGCTGGAGCATTCAAAA
AACGACCCGCAAAACAAACGCAATTCCGTAGATTCTATGATCGCGGTGAT
CTTCCAATCGCTTTAGAACATGATACCAAGGGCAATAAAATCGCCTGGAA
AGTGGAAATCGAGAAATTAGATTACCATCACTATCTCCCAATGTTTTTCG
AAGGTCTCCGTGAAACTGAACATCCATATGAATTTTTTGCACGCCAAGGA
GTTCATGATATGTTAGAACACGGCGGAAGTAAAATCTTACCTGTCGTCCC
ACAACTTATTTTACCAATCCGTGATGCGTTGGATACGCGCGATTTACAGG
TCGTGTGTACCACGTTGAAGGTACTCCAACATTTGGTCATCTCTGGTGAA
ATGGTCGGAGAGGCCTTAGTACCTTATTATAGACAGATTCTACCagtgtt
aaatattttcaaaagtaaaaatttgaattctgGTGACGGTATTGATTATA
GTCAACAACGCCGTGAAAATATTGGTGATTTGATTCAAGAAACACTTGAA
GCTTTTGAAAGACACGGTGGCGAGGACGCTTTTATCAATATCAAATACAT
GATTCCAACTTATGAGTCATGCCTACTGaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002602XLOC_002602Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004615-proteinTCONS_00004615-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004615-exon-sc0000047-1491911889:72582..73010TCONS_00004615-exon-sc0000047-1491911889:72582..73010Clytia hemisphaericaexon
TCONS_00004615-exon-sc0000047-1510915933:72582..73010TCONS_00004615-exon-sc0000047-1510915933:72582..73010Clytia hemisphaericaexon
TCONS_00004615-exon-sc0000047-1575043694:72582..73010TCONS_00004615-exon-sc0000047-1575043694:72582..73010Clytia hemisphaericaexon
TCONS_00004615-exon-sc0000047-1491911889:76510..77241TCONS_00004615-exon-sc0000047-1491911889:76510..77241Clytia hemisphaericaexon
TCONS_00004615-exon-sc0000047-1510915933:76510..77241TCONS_00004615-exon-sc0000047-1510915933:76510..77241Clytia hemisphaericaexon
TCONS_00004615-exon-sc0000047-1575043694:76510..77241TCONS_00004615-exon-sc0000047-1575043694:76510..77241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:72582..77241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.044321	0	0.0527502	0.0960866	0.645076	0.412222	0.767433	0.224273	0.743054	0.948565	0.740752	0.471567	1.8233	0.978092	0.423508	0.35857	0.616346	0.683011	2.29768	1.90446	0.828722	1.1001	0.47002	0.500896	350.828	198.117	0.369585	0.381746	0.0827259	0.126427
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR019399Parkin_co-regulated_protein
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00004615 vs. Swiss-Prot (Human)
Match: PACRG (Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2)

HSP 1 Score: 362.844 bits (930), Expect = 1.418e-123
Identity = 174/260 (66.92%), Postives = 201/260 (77.31%), Query Frame = 1 
Query:  382 LFAQGFTTKSWMKNVEVVGPPEAGAFKKRPAKQTQFRRFYDRGDLPIALEHDTKGNKIAWKVEIEKLDYHHYLPMFFEGLRETEHPYEFFARQGVHDMLEHGGSKILPVVPQLILPIRDALDTRDLQVVCTTLKVLQHLVISGEMVGEALVPYYRQILPVLNIFKSKN---------------------------------------LNSGDGIDYSQQRRENIGDLIQETLEAFERHGGEDAFINIKYMIPTYESCLLN 1044
            L ++GFT K+ MKN  V GPP AGAFK+RP K T FR+FY+RGD PIALEHD+KGNKIAWKVEIEKLDYHHYLP+FF+GL E   PYEFFARQG+HDMLEHGG+KILPV+PQLI+PI++AL+ R+ QV+C TLKVLQHLV+S EMVG+ALVPYYRQILPVLNIFK+ N                                       +NSGDGIDYSQQ+RENIGDLIQETLEAFER+GGE+AFINIKY++PTYESCLLN
Sbjct:   37 LVSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 296
The following BLAST results are available for this feature:
BLAST of TCONS_00004615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PACRG1.418e-12366.92Parkin coregulated gene protein OS=Homo sapiens GN... [more]
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