TCONS_00004598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004598
Unique NameTCONS_00004598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004598 ID=TCONS_00004598|Name=TCONS_00004598|organism=Clytia hemisphaerica|type=transcript|length=830bp
GAAAATTGTTCCTTCAAAGCATTAACTAAGAAAATAATATGATGCCctaa
aaaaagttatgtttgAAAAATACCAAAGAggttataataaaaaaaactat
tttacgACATTGCGTAATTGCGTTTTCCATGCACGCCCTGCCCGCCCTTT
TTGGGGCGTCGGGCACGGTGTCTTTTGACCTTCATGAAGACAACTACTGC
AATAAAAACAACGAGTACGAAAATGATTATTGCGTCAGTAATGGTAAAGT
TTTTCCACGAAGTTACAAAACGCTCAATATACGGATACGGATAGTTGTGT
GTGTTGTAGTTGTTACCACCGTTGTTAGAATTAGAAGGTTCCTTAAACTC
GCAGAACGTATTTGAATATCCTTCCAGGCATTTACAGAAACGAACTGCAC
TTTGCATGGCGAATCCATCGGTGTCGTTCTTCGTGTTGTAAATCTCCACA
CAAGTTCCTCCATGTTTACATCCTTCATAATTTCTACAAACACCGCATGA
TTGAGTTTCAACACAGTTTAGAAGACAATTCTTTCCCGCACATTTACATC
CATGAGCATGGGACTCACAAATTTTGTGATTTCGCCGACATGCTTCACAA
GAACTCTGATACTGGCAAAATTCTCCACTAAACCCATCTCGACATTTACA
GTATGATCTCTGCTGATCTCCTTCAAAGTGGACACATGTAGCACCGTTTC
TACAATCACCCGTTCTGCACGGATTGTGTTTATTGACTGCAATTTTACAC
TCGCCTCCTGTGAAATCCTTAGGGCAAGTACAATTGTAAGTGATTGTATC
TCCTTTCACCAACTCTAAAcactttccatt
Run BLAST on NCBI

protein sequence of TCONS_00004598-protein

>TCONS_00004598-protein ID=TCONS_00004598-protein|Name=TCONS_00004598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
NGKCLELVKGDTITYNCTCPKDFTGGECKIAVNKHNPCRTGDCRNGATCV
HFEGDQQRSYCKCRDGFSGEFCQYQSSCEACRRNHKICESHAHGCKCAGK
NCLLNCVETQSCGVCRNYEGCKHGGTCVEIYNTKNDTDGFAMQSAVRFCK
CLEGYSNTFCEFKEPSNSNNGGNNYNTHNYPYPYIERFVTSWKNFTITDA
IIIFVLVVFIAVVVFMKVKRHRARRPKKGGQGVHGKRNYAMS
Run BLAST on NCBI

transcript from alignment at sc0000045:634569..635398

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004598 ID=TCONS_00004598|Name=TCONS_00004598|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0000045:634569..635398 (Clytia hemisphaerica)
aatggaaagtgTTTAGAGTTGGTGAAAGGAGATACAATCACTTACAATTG
TACTTGCCCTAAGGATTTCACAGGAGGCGAGTGTAAAATTGCAGTCAATA
AACACAATCCGTGCAGAACGGGTGATTGTAGAAACGGTGCTACATGTGTC
CACTTTGAAGGAGATCAGCAGAGATCATACTGTAAATGTCGAGATGGGTT
TAGTGGAGAATTTTGCCAGTATCAGAGTTCTTGTGAAGCATGTCGGCGAA
ATCACAAAATTTGTGAGTCCCATGCTCATGGATGTAAATGTGCGGGAAAG
AATTGTCTTCTAAACTGTGTTGAAACTCAATCATGCGGTGTTTGTAGAAA
TTATGAAGGATGTAAACATGGAGGAACTTGTGTGGAGATTTACAACACGA
AGAACGACACCGATGGATTCGCCATGCAAAGTGCAGTTCGTTTCTGTAAA
TGCCTGGAAGGATATTCAAATACGTTCTGCGAGTTTAAGGAACCTTCTAA
TTCTAACAACGGTGGTAACAACTACAACACACACAACTATCCGTATCCGT
ATATTGAGCGTTTTGTAACTTCGTGGAAAAACTTTACCATTACTGACGCA
ATAATCATTTTCGTACTCGTTGTTTTTATTGCAGTAGTTGTCTTCATGAA
GGTCAAAAGACACCGTGCCCGACGCCCCAAAAAGGGCGGGCAGGGCGTGC
ATGGAAAACGCAATTACGCAATGTcgtaaaatagttttttttattataac
cTCTTTGGTATTTTTcaaacataactttttttagGGCATCATATTATTTT
CTTAGTTAATGCTTTGAAGGAACAATTTTC

Coding sequence (CDS) from alignment at sc0000045:634569..635398

>TCONS_00004598 ID=TCONS_00004598|Name=TCONS_00004598|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000045:634569..635398 (Clytia hemisphaerica)
aatggaaagtgTTTAGAGTTGGTGAAAGGAGATACAATCACTTACAATTG
TACTTGCCCTAAGGATTTCACAGGAGGCGAGTGTAAAATTGCAGTCAATA
AACACAATCCGTGCAGAACGGGTGATTGTAGAAACGGTGCTACATGTGTC
CACTTTGAAGGAGATCAGCAGAGATCATACTGTAAATGTCGAGATGGGTT
TAGTGGAGAATTTTGCCAGTATCAGAGTTCTTGTGAAGCATGTCGGCGAA
ATCACAAAATTTGTGAGTCCCATGCTCATGGATGTAAATGTGCGGGAAAG
AATTGTCTTCTAAACTGTGTTGAAACTCAATCATGCGGTGTTTGTAGAAA
TTATGAAGGATGTAAACATGGAGGAACTTGTGTGGAGATTTACAACACGA
AGAACGACACCGATGGATTCGCCATGCAAAGTGCAGTTCGTTTCTGTAAA
TGCCTGGAAGGATATTCAAATACGTTCTGCGAGTTTAAGGAACCTTCTAA
TTCTAACAACGGTGGTAACAACTACAACACACACAACTATCCGTATCCGT
ATATTGAGCGTTTTGTAACTTCGTGGAAAAACTTTACCATTACTGACGCA
ATAATCATTTTCGTACTCGTTGTTTTTATTGCAGTAGTTGTCTTCATGAA
GGTCAAAAGACACCGTGCCCGACGCCCCAAAAAGGGCGGGCAGGGCGTGC
ATGGAAAACGCAATTACGCAATGTcgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002592XLOC_002592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004598-exon-sc0000045-1491911889:634569..635398TCONS_00004598-exon-sc0000045-1491911889:634569..635398Clytia hemisphaericaexon
TCONS_00004598-exon-sc0000045-1510915933:634569..635398TCONS_00004598-exon-sc0000045-1510915933:634569..635398Clytia hemisphaericaexon
TCONS_00004598-exon-sc0000045-1575043694:634569..635398TCONS_00004598-exon-sc0000045-1575043694:634569..635398Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004598-proteinTCONS_00004598-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:634569..635398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.05713	0	0.194057	0.253139	2.85059	1.46113	0.954846	1.44402	1.44427	1.90823	6.94564	0.646821	11.3226	5.9977	1.16785	5.22201	0.557535	0.703329	0	0.889701	0.0552365	0.161655	0	0	0.184014	0.164228	0	0	0.0634099	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR013032EGF-like_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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