TCONS_00004587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004587
Unique NameTCONS_00004587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004587 ID=TCONS_00004587|Name=TCONS_00004587|organism=Clytia hemisphaerica|type=transcript|length=1627bp
GCTCAAGTTTGGAAACGAGGCAAGAGAAAATTCAAATctctcattaaaaa
aaatttaaataataaaataaaataaaataaataaatattttttactttat
gAATATCTTCAGGTACTGTCAGGTATCCTAGTTTGAGTGAAGAAAACGAT
TTAGTTTAATTttatactcaaagtttcatgccatccagaatggcaatctt
cagtgaaataaaACCTTATCTTCAGGTATCTTTAATTTTGTGATGTACTA
CTTTGGCCAGAATATCTGAAACTTGGATTATCAACACCAATCTTTGATAG
TAAATGTCCTTTTTCAACAATGAATATATCACCGTGTTTTGGTTTGTAAA
AACAAAGAATACAAACCACAATCAGAGTtgcaaaaacaatcaaacaaacc
aACACAATGAAACCCAAATTTATTTGACAACGTGACCCCAAATAACCGAA
CAAGCAAGTACAAGTGTTCATGGTAGTCCCCTTGTGAACATTACACTGCC
CTGAATTCTCGCATGGTTTATCCGAGTAACATAATTGGATTAAGTGACAT
CTCGTTCCCCCAAACTCGTTCATACAACTACAAACAAATGAATCATTAGA
CAGCAAACATGTTCCATTATTTCCACAAGGACTTTGTAGACATTGATTCT
CATACTGACAAAATCTTCCTTGAAATTCATCAGAACAGGAGCAATTGTAT
GATGTCTCGTTTATGATTTGACATGTTGAATTGTTCTGACAATTATTCAC
AGAACAGGCAGTGCAATTCAGCTTGTTTCTAGTCTGAATGTCCTCATAAA
TATCTTTCACATGTGGCGGTGATCGACAATTACCAAATATATCGAATTTG
TTGTTATCAGAGATAAGAGCTTGTATAACATTGTACAATGTGCAGTCACA
ATGTAATGGGTTTCCTTCAACATCAAGATCATCTGGCGAGGAAAGAAACC
ATTCTTTTCGAAGTGTTGTCAATCTATTATTCAGTAGTTTTACTAATTGC
GAATTGAAAGCATTTGCTGGAAAGTCTGTAAATTGGTTATTTTGCATTTC
CAAACGATTCAAGTGTTGGTTTTTTAGTAGACCCTCGGGAAGTTCACTCA
AGTTATTGTTATTGAACCACAGTCTATCTAACTTCACATGTAATTTAAAG
ACATCCTTTTCAATTTTCTCAATTCCATTCCCATTAAAACTGATCCAAAG
AAGTTCCATAGCATCATCAAGGaccccatttttcaaaagttttatagaAT
TGTTATCTATGAAAACCTTTTGTAATTTTGGTAAGTTGCTAAAAATACCA
GATTCCAGTTCCATAATTATGTTGTTTGAAATGTTTACCTCTTTAACATT
TTGATATCCCATAAAATCATCTTTGGTTATTTCCCTGATTATATTTTCAC
TGATGCATAAGTTAACAATTGATGGAATGTAAACAGATAAGTTTGCTGGA
GGTTTTGTTAGTAAATTTCTTGTAAGGTCAATTTCAGTCAAATttgtaaa
attgacaaaatattCTGATGGGAAATGAGTGATTAAATTGTCTTTCAATA
TCAACCCTTTTGCTGTCCATGGGTTACTAACATTGGCAATGTCTCTTAAT
AATATTGCATCAGTGATATTTTGGGCA
Run BLAST on NCBI

protein sequence of TCONS_00004587-protein

>TCONS_00004587-protein ID=TCONS_00004587-protein|Name=TCONS_00004587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
AQNITDAILLRDIANVSNPWTAKGLILKDNLITHFPSEYFVNFTNLTEID
LTRNLLTKPPANLSVYIPSIVNLCISENIIREITKDDFMGYQNVKEVNIS
NNIIMELESGIFSNLPKLQKVFIDNNSIKLLKNGVLDDAMELLWISFNGN
GIEKIEKDVFKLHVKLDRLWFNNNNLSELPEGLLKNQHLNRLEMQNNQFT
DFPANAFNSQLVKLLNNRLTTLRKEWFLSSPDDLDVEGNPLHCDCTLYNV
IQALISDNNKFDIFGNCRSPPHVKDIYEDIQTRNKLNCTACSVNNCQNNS
TCQIINETSYNCSCSDEFQGRFCQYENQCLQSPCGNNGTCLLSNDSFVCS
CMNEFGGTRCHLIQLCYSDKPCENSGQCNVHKGTTMNTCTCLFGYLGSRC
QINLGFIVLVCLIVFATLIVVCILCFYKPKHGDIFIVEKGHLLSKIGVDN
PSFRYSGQSSTSQN
Run BLAST on NCBI

transcript from alignment at sc0000045:313709..315335

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004587 ID=TCONS_00004587|Name=TCONS_00004587|organism=Clytia hemisphaerica|type=transcript|length=1627bp|location=Sequence derived from alignment at sc0000045:313709..315335 (Clytia hemisphaerica)
TGCCCAAAATATCACTGATGCAATATTATTAAGAGACATTGCCAATGTTA
GTAACCCATGGACAGCAAAAGGGTTGATATTGAAAGACAATTTAATCACT
CATTTCCCATCAGaatattttgtcaattttacaaATTTGACTGAAATTGA
CCTTACAAGAAATTTACTAACAAAACCTCCAGCAAACTTATCTGTTTACA
TTCCATCAATTGTTAACTTATGCATCAGTGAAAATATAATCAGGGAAATA
ACCAAAGATGATTTTATGGGATATCAAAATGTTAAAGAGGTAAACATTTC
AAACAACATAATTATGGAACTGGAATCTGGTATTTTTAGCAACTTACCAA
AATTACAAAAGGTTTTCATAGATAACAATtctataaaacttttgaaaaat
ggggtCCTTGATGATGCTATGGAACTTCTTTGGATCAGTTTTAATGGGAA
TGGAATTGAGAAAATTGAAAAGGATGTCTTTAAATTACATGTGAAGTTAG
ATAGACTGTGGTTCAATAACAATAACTTGAGTGAACTTCCCGAGGGTCTA
CTAAAAAACCAACACTTGAATCGTTTGGAAATGCAAAATAACCAATTTAC
AGACTTTCCAGCAAATGCTTTCAATTCGCAATTAGTAAAACTACTGAATA
ATAGATTGACAACACTTCGAAAAGAATGGTTTCTTTCCTCGCCAGATGAT
CTTGATGTTGAAGGAAACCCATTACATTGTGACTGCACATTGTACAATGT
TATACAAGCTCTTATCTCTGATAACAACAAATTCGATATATTTGGTAATT
GTCGATCACCGCCACATGTGAAAGATATTTATGAGGACATTCAGACTAGA
AACAAGCTGAATTGCACTGCCTGTTCTGTGAATAATTGTCAGAACAATTC
AACATGTCAAATCATAAACGAGACATCATACAATTGCTCCTGTTCTGATG
AATTTCAAGGAAGATTTTGTCAGTATGAGAATCAATGTCTACAAAGTCCT
TGTGGAAATAATGGAACATGTTTGCTGTCTAATGATTCATTTGTTTGTAG
TTGTATGAACGAGTTTGGGGGAACGAGATGTCACTTAATCCAATTATGTT
ACTCGGATAAACCATGCGAGAATTCAGGGCAGTGTAATGTTCACAAGGGG
ACTACCATGAACACTTGTACTTGCTTGTTCGGTTATTTGGGGTCACGTTG
TCAAATAAATTTGGGTTTCATTGTGTtggtttgtttgattgtttttgcaA
CTCTGATTGTGGTTTGTATTCTTTGTTTTTACAAACCAAAACACGGTGAT
ATATTCATTGTTGAAAAAGGACATTTACTATCAAAGATTGGTGTTGATAA
TCCAAGTTTCAGATATTCTGGCCAAAGTAGTACATCACAAAATTAAAGAT
ACCTGAAGATAAGGTtttatttcactgaagattgccattctggatggcat
gaaactttgagtataaAATTAAACTAAATCGTTTTCTTCACTCAAACTAG
GATACCTGACAGTACCTGAAGATATTcataaagtaaaaaatatttattta
ttttattttattttattatttaaattttttttaatgagagATTTGAATTT
TCTCTTGCCTCGTTTCCAAACTTGAGC

Coding sequence (CDS) from alignment at sc0000045:313709..315335

>TCONS_00004587 ID=TCONS_00004587|Name=TCONS_00004587|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0000045:313709..315335 (Clytia hemisphaerica)
GCCCAAAATATCACTGATGCAATATTATTAAGAGACATTGCCAATGTTAG
TAACCCATGGACAGCAAAAGGGTTGATATTGAAAGACAATTTAATCACTC
ATTTCCCATCAGaatattttgtcaattttacaaATTTGACTGAAATTGAC
CTTACAAGAAATTTACTAACAAAACCTCCAGCAAACTTATCTGTTTACAT
TCCATCAATTGTTAACTTATGCATCAGTGAAAATATAATCAGGGAAATAA
CCAAAGATGATTTTATGGGATATCAAAATGTTAAAGAGGTAAACATTTCA
AACAACATAATTATGGAACTGGAATCTGGTATTTTTAGCAACTTACCAAA
ATTACAAAAGGTTTTCATAGATAACAATtctataaaacttttgaaaaatg
gggtCCTTGATGATGCTATGGAACTTCTTTGGATCAGTTTTAATGGGAAT
GGAATTGAGAAAATTGAAAAGGATGTCTTTAAATTACATGTGAAGTTAGA
TAGACTGTGGTTCAATAACAATAACTTGAGTGAACTTCCCGAGGGTCTAC
TAAAAAACCAACACTTGAATCGTTTGGAAATGCAAAATAACCAATTTACA
GACTTTCCAGCAAATGCTTTCAATTCGCAATTAGTAAAACTACTGAATAA
TAGATTGACAACACTTCGAAAAGAATGGTTTCTTTCCTCGCCAGATGATC
TTGATGTTGAAGGAAACCCATTACATTGTGACTGCACATTGTACAATGTT
ATACAAGCTCTTATCTCTGATAACAACAAATTCGATATATTTGGTAATTG
TCGATCACCGCCACATGTGAAAGATATTTATGAGGACATTCAGACTAGAA
ACAAGCTGAATTGCACTGCCTGTTCTGTGAATAATTGTCAGAACAATTCA
ACATGTCAAATCATAAACGAGACATCATACAATTGCTCCTGTTCTGATGA
ATTTCAAGGAAGATTTTGTCAGTATGAGAATCAATGTCTACAAAGTCCTT
GTGGAAATAATGGAACATGTTTGCTGTCTAATGATTCATTTGTTTGTAGT
TGTATGAACGAGTTTGGGGGAACGAGATGTCACTTAATCCAATTATGTTA
CTCGGATAAACCATGCGAGAATTCAGGGCAGTGTAATGTTCACAAGGGGA
CTACCATGAACACTTGTACTTGCTTGTTCGGTTATTTGGGGTCACGTTGT
CAAATAAATTTGGGTTTCATTGTGTtggtttgtttgattgtttttgcaAC
TCTGATTGTGGTTTGTATTCTTTGTTTTTACAAACCAAAACACGGTGATA
TATTCATTGTTGAAAAAGGACATTTACTATCAAAGATTGGTGTTGATAAT
CCAAGTTTCAGATATTCTGGCCAAAGTAGTACATCACAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002581XLOC_002581Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004587-proteinTCONS_00004587-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004587-exon-sc0000045-1491911889:313709..315335TCONS_00004587-exon-sc0000045-1491911889:313709..315335Clytia hemisphaericaexon
TCONS_00004587-exon-sc0000045-1510915933:313709..315335TCONS_00004587-exon-sc0000045-1510915933:313709..315335Clytia hemisphaericaexon
TCONS_00004587-exon-sc0000045-1575043694:313709..315335TCONS_00004587-exon-sc0000045-1575043694:313709..315335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:313709..315335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.400313	0.292776	0.708211	0.720589	1.18091	0.693213	0.578999	0.963647	0.126501	0.313384	0	0.0833145	0.0831986	0.190086	0.213104	0.182955	0	0.019251	0.0797891	0.139156	0.145142	0.106193	0.0286869	0.0782418	0.0537248	0.143844	3.94528	2.7826	0.0833093	0.169758
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00004587 vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.051e-21
Identity = 107/410 (26.10%), Postives = 167/410 (40.73%), Query Frame = -2 
Query:  427 LILKDNLITHFPSEYFVNFTNLTEIDLTRNLLTKPPANLSVYIPSIVNLCISENIIR---EITKDDFMGYQNVKEVNISNNIIMELESGIFSNLPKLQK--------VFIDNNSIKLLKNGVLDDAMELLWISFNGNGIEKIEKDVFKLHVKLDRLWFNNNNLSELPEGLLKN-QHLNRLEMQNNQFTDFPANAFNS----QLVKLLNNRLTTLRKEWF--LSSPDDLDVEGNPLHCDCTLYNVIQALISDNNKFDIFGNCRSPPHVKD------IYEDIQTRNKLN------CTACSVNNCQNNSTCQIINETSYNCSCSDEFQGRFCQYE-NQCLQSPCGNNGTCLLSN---DSFVCSCMNEFGGTRCHLIQLCYSDKPCENSGQCNVHKGTTMNTCTCLFGYLGSRC 1554
            L L DN IT      F    +L+ I+L  N     P N + ++  +        I+       K  F+    +++V I +      E       P+  +        V   N  ++ L  G+  D  EL      GN +  + +++  L   L  +  +NN++S L      N  HL+ L +  N+    P +AFN     +++ L  N ++++ +  F  L+S   L +  NPLHCDC+L   +   +    K      C SP  + D           Q +  ++      C AC  + C+NN TC       Y C+C   ++G+ C    N C+Q+PC + GTC LS+   D F CSC   F G RC +      D  CEN+  C    G     C C   Y G  C
Sbjct:  634 LSLYDNRITTITPGAFTTLVSLSTINLLSN-----PFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELY---LEGNHLTAVPRELSALR-HLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSL-RWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCV--DGINNYVCICPPNYTGELC 1031
The following BLAST results are available for this feature:
BLAST of TCONS_00004587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT33.051e-2126.10Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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